Regulon of Cobalamin in Clostridium novyi NT
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Clostridiaceae |
| Under regulation: | |
| - Genes | 25 |
| - Operons | 3 |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -298
Score: 107 Sequence: AATTAAATAAGTCAT...
Locus tag: NT01CX_2077
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: NT01CX_2078
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: NT01CX_2079
Name: cobS Funciton: Cobalamin synthase
Locus tag: NT01CX_2080
Name: cobC Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
Locus tag: NT01CX_2081
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: NT01CX_2082
Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: NT01CX_2083
Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: NT01CX_2084
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: NT01CX_2085
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: NT01CX_2086
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD |
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cobT
|
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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cobU
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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cobS
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Cobalamin synthase
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cobC
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Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
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cbiP
|
Cobyric acid synthase
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cbiB
|
Adenosylcobinamide-phosphate synthase
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cobD
|
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
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btuF
|
Vitamin B12 ABC transporter, B12-binding component BtuF
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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Position: -349
Score: 95.8 Sequence: AAAATACATACAAAG...
Locus tag: NT01CX_1329
Name: cbiM Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: NT01CX_1330
Name: cbiN Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: NT01CX_1331
Name: cbiQ Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: NT01CX_1332
Name: cbiO Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter |
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cbiM
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Substrate-specific component CbiM of cobalt ECF transporter
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cbiN
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Additional substrate-specific component CbiN of cobalt ECF transporter
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cbiQ
|
Transmembrane component CbiQ of energizing module of cobalt ECF transporter
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cbiO
|
ATPase component CbiO of energizing module of cobalt ECF transporter
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Position: -301
Score: 119.1 Sequence: AAAATTGTATATTAG...
Locus tag: NT01CX_0583
Name: cbiA Funciton: Cobyrinic acid A,C-diamide synthase
Locus tag: NT01CX_0582
Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: NT01CX_0581
Name: cbiD Funciton: Cobalt-precorrin-6 synthase, anaerobic
Locus tag: NT01CX_0580
Name: cbiE Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)
Locus tag: NT01CX_0579
Name: cbiT Funciton: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: NT01CX_0578
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: NT01CX_0577
Name: cbiF Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: NT01CX_0576
Name: cbiG Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: NT01CX_0575
Name: cbiH Funciton: Cobalt-precorrin-3b C17-methyltransferase
Locus tag: NT01CX_0574
Name: cbiJ Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54)
Locus tag: NT01CX_0573
Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
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cbiA
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Cobyrinic acid A,C-diamide synthase
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cbiC
|
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
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cbiD
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Cobalt-precorrin-6 synthase, anaerobic
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cbiE
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Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)
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cbiT
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Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
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cbiL
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Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
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cbiF
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Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
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cbiG
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Cobalamin biosynthesis protein CbiG
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cbiH
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Cobalt-precorrin-3b C17-methyltransferase
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cbiJ
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Cobalt-precorrin-6x reductase (EC 1.3.1.54)
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cbiK
|
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |