Regulog Cobalamin - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 4 | 1 |
| Clostridium sp. SS2/1 | 5 | 1 |
| Clostridium cellulolyticum H10 | 25 | 2 |
| Clostridium phytofermentans ISDg | 32 | 4 |
| Clostridium tetani E88 | 45 | 8 |
| Clostridium acetobutylicum ATCC 824 | 25 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 42 | 1 |
| Clostridium novyi NT | 25 | 3 |
| Clostridium perfringens ATCC 13124 | 24 | 4 |
| Clostridium difficile 630 | 25 | 3 |
| Clostridium beijerincki NCIMB 8052 | 9 | 1 |
| Clostridium sp. OhILAs | 43 | 8 |
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | 12 | 2 |
| Clostridium nexile DSM 1787 | 6 | 1 |
| Clostridium leptum DSM 753 | 6 | 1 |
| Clostridium hiranonis DSM 13275 | 4 | 1 |
| Clostridium butyricum 5521 | 18 | 2 |
| Clostridium bolteae ATCC BAA-613 | 6 | 1 |
| Clostridium bartlettii DSM 16795 | 36 | 4 |
| Genes | Function | ||||||||||||||||||||
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| CRON 1. | |||||||||||||||||||||
| THA_169 |
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Clostridium sp. OhILAs Site: position = -356 score = 106.08 sequence = TAAATAGAATGACCA... Gene: Clos_0622: YidE/YbjL duplication |
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YidE/YbjL duplication |
| sucC |
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Gene: Clos_0623: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
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Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) |
| sucD |
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Gene: Clos_0624: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
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Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
| Clos_0625 |
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Gene: Clos_0625: Phytochrome-like protein; Cph2 |
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Phytochrome-like protein; Cph2 |
| CRON 2. | |||||||||||||||||||||
| dppB |
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Gene: CBY_0574: inner membrane ABC transporter permease protein YddR |
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Clostridium bartlettii DSM 16795 Site: position = -480 score = 108.18 sequence = TGAATTGAATATTGT... Gene: CLOBAR_00841: inner membrane ABC transporter permease protein YddR |
inner membrane ABC transporter permease protein YddR |
| dppC |
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Gene: CBY_0573: inner membrane ABC transporter permease protein YddQ |
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Gene: CLOBAR_00840: inner membrane ABC transporter permease protein YddQ |
inner membrane ABC transporter permease protein YddQ |
| dppA |
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Gene: CBY_0572: putative ABC-type dipeptide/nickel transport system, periplasmic component |
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Gene: CLOBAR_00839: putative ABC-type dipeptide/nickel transport system, periplasmic component |
putative ABC-type dipeptide/nickel transport system, periplasmic component |
| dppD |
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Gene: CBY_0571: oligopeptide transport ATP-binding protein AppD |
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2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_00838: oligopeptide transport ATP-binding protein AppD Gene: CLOBAR_00837: oligopeptide transport ATP-binding protein AppD |
oligopeptide transport ATP-binding protein AppD |
| CRON 3. | |||||||||||||||||||||
| cobW |
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Gene: CBO1492: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
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Clostridium scindens ATCC 35704 Site: position = -248 score = 109.68 sequence = TAATAACAGTAACGT... Gene: CLOSCI_02169: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
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Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
| mtbC |
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Gene: CBO1494: Dimethylamine corrinoid protein 2 |
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Clostridium scindens ATCC 35704 Gene: CLOSCI_02168: Dimethylamine corrinoid protein 2 Gene: CLOSCI_02165: Dimethylamine corrinoid protein 2 |
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Dimethylamine corrinoid protein 2 |
| hemE |
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Clostridium scindens ATCC 35704 Gene: CLOSCI_02167: hypothetical protein Gene: CLOSCI_02162: hypothetical protein |
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hypothetical protein |
| CBO1493 |
Gene: CKL_0711: Methylcobalamin:coenzyme M methyltransferase, methylamine-specific |
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Gene: CBO1493: Methylcobalamin:coenzyme M methyltransferase, methylamine-specific |
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Gene: CLOSCI_02166: Methylcobalamin:coenzyme M methyltransferase, methylamine-specific |
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Methylcobalamin:coenzyme M methyltransferase, methylamine-specific |
| mtbA |
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Gene: CBO1495: Methylcobalamin:coenzyme M methyltransferase, methylamine-specific |
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Gene: CLOSCI_02164: Methylcobalamin:coenzyme M methyltransferase, methylamine-specific |
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Methylcobalamin:coenzyme M methyltransferase, methylamine-specific |
| CBO1491 |
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Gene: Ccel_3201: probable electron transfer protein |
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Gene: CBO1491: probable electron transfer protein |
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Gene: CLOSCI_02163: probable electron transfer protein |
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Clostridium bartlettii DSM 16795 Gene: CLOBAR_01843: probable electron transfer protein Gene: CLOBAR_01844: probable electron transfer protein |
probable electron transfer protein |
| CRON 4. | |||||||||||||||||||||
| CTC00778 |
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Clostridium tetani E88 Site: position = -405 score = 115.73 sequence = TAAATATTTATTTAT... Gene: CTC00778: hypothetical protein |
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hypothetical protein |
| CRON 5. | |||||||||||||||||||||
| dppA |
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Clostridium tetani E88 Site: position = -305 score = 121.66 sequence = ATATTATGAATTTTT... Gene: CTC01400: periplasmic dipeptide transport protein precursor |
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periplasmic dipeptide transport protein precursor |
| dppB |
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Gene: CTC01401: transport system permease, nickel or dipeptide |
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transport system permease, nickel or dipeptide |
| dppC |
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Gene: CTC01402: transport system permease, dipeptide or nickel |
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transport system permease, dipeptide or nickel |
| dppD |
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Gene: CTC01403: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) |
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Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) |
| dppF |
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Gene: CTC01404: peptide transport ATP-binding protein |
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peptide transport ATP-binding protein |
| CTC01405 |
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Gene: CTC01405: Methyltransferase (EC 2.1.1.-) |
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Methyltransferase (EC 2.1.1.-) |
| CRON 6. | |||||||||||||||||||||
| cbiP |
Gene: CKL_0721: Cobyric acid synthase |
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Gene: Ccel_1284: Cobyric acid synthase |
Gene: null: Cobyric acid synthase |
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Clostridium tetani E88 Site: position = -400 score = 126.42 sequence = GAATATGAAAATATT... Gene: CTC00720: Cobyric acid synthase |
Gene: CAC1374: Cobyric acid synthase |
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Clostridium botulinum A str. ATCC 3502 Site: position = -323 score = 122.69 sequence = TTTAATAAAAAGATT... Gene: CBO0914: Cobyric acid synthase |
Gene: NT01CX_2081: Cobyric acid synthase |
Gene: CPF_1300: Cobyric acid synthase |
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Clostridium difficile 630 Site: position = -295 score = 102.08 sequence = GAATATTAGATTAAA... Gene: CD3435: Cobyric acid synthase |
Gene: Cbei_1272: Cobyric acid synthase |
Gene: Clos_0863: Cobyric acid synthase |
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Gene: CLOSCI_03605: Cobyric acid synthase |
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Gene: CLOHIR_00695: Cobyric acid synthase |
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Clostridium butyricum 5521 Gene: CBY_3407: Cobyric acid synthase Gene: CBY_0388: Cobyric acid synthase |
Gene: CLOBOL_01278: Cobyric acid synthase |
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Clostridium bartlettii DSM 16795 Site: position = -274 score = 71.78 sequence = AGGGAAAAAGGTACA... Gene: CLOBAR_01422: Cobyric acid synthase |
Cobyric acid synthase |
| cbiB |
Gene: CKL_2910: Adenosylcobinamide-phosphate synthase |
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Gene: Ccel_1286: Adenosylcobinamide-phosphate synthase |
Gene: null: Adenosylcobinamide-phosphate synthase |
Gene: CTC00721: Adenosylcobinamide-phosphate synthase |
Gene: CAC0582: Adenosylcobinamide-phosphate synthase |
Gene: CBO0915: Adenosylcobinamide-phosphate synthase |
Gene: NT01CX_2082: Adenosylcobinamide-phosphate synthase |
Gene: CPF_1294: Adenosylcobinamide-phosphate synthase |
Gene: CD3433: Adenosylcobinamide-phosphate synthase |
Gene: Cbei_1268: Adenosylcobinamide-phosphate synthase |
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Clostridium sp. OhILAs Site: position = -319 score = 118.45 sequence = ACAAATTAAATAGTT... Gene: Clos_2212: Adenosylcobinamide-phosphate synthase |
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Gene: CLOSCI_03603: Adenosylcobinamide-phosphate synthase |
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Gene: CLOHIR_00697: Adenosylcobinamide-phosphate synthase |
Gene: CBY_3405: Adenosylcobinamide-phosphate synthase |
Gene: CLOBOL_01280: Adenosylcobinamide-phosphate synthase |
Gene: CLOBAR_01420: Adenosylcobinamide-phosphate synthase |
Adenosylcobinamide-phosphate synthase |
| cobD |
Gene: CKL_0714: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
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Gene: Ccel_1287: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
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Clostridium phytofermentans ISDg Gene: null: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Gene: null: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: CTC00722: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: CAC1369: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: CBO0916: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: NT01CX_2083: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: CPF_1295: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: CD3432: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Cbei_1269: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Clos_2211: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
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Gene: CLOSCI_03604: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
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Gene: CLOHIR_00698: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: CBY_3406: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: CLOBOL_01279: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: CLOBAR_01419: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
| cbiM |
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Clostridium kluyveri DSM 555 Site: position = -345 score = 89.08 sequence = AATTTAATAATAAAA... Gene: CKL_3429: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium cellulolyticum H10 Site: position = -380 score = 95.57 sequence = TAATAATTAACGATA... Gene: Ccel_1266: Substrate-specific component CbiM of cobalt ECF transporter |
Gene: null: Substrate-specific component CbiM of cobalt ECF transporter |
Gene: CTC00723: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium acetobutylicum ATCC 824 Site: position = -313 score = 105.44 sequence = TGCTACTAAAATTTG... Gene: CAC1365: Substrate-specific component CbiM of cobalt ECF transporter |
Gene: CBO0917: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium novyi NT Site: position = -349 score = 95.81 sequence = AAAATACATACAAAG... Gene: NT01CX_1329: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium perfringens ATCC 13124 Site: position = -486 score = 93.49 sequence = TTAAATATTTAGAAA... Gene: CPF_0185: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium difficile 630 Site: position = -373 score = 102.77 sequence = AAATATATAATATTA... Gene: CD0324: Substrate-specific component CbiM of cobalt ECF transporter |
Gene: Cbei_3710: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium sp. OhILAs Site: position = -432 score = 121.76 sequence = GTAAATAAGAAGCAT... Gene: Clos_1011: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium scindens ATCC 35704 Site: position = -376 score = 65.35 sequence = ACTTATTGTGGTCAT... Gene: CLOSCI_03609: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium hiranonis DSM 13275 Site: position = -403 score = 101.91 sequence = GAATATAAATAGTTT... Gene: CLOHIR_01689: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium butyricum 5521 Site: position = -417 score = 102.37 sequence = CAAAAATATAATTAT... Gene: CBY_1415: Substrate-specific component CbiM of cobalt ECF transporter |
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Clostridium bartlettii DSM 16795 Site: position = -386 score = 114.73 sequence = AGATGAAATGTATAT... Gene: CLOBAR_01388: Substrate-specific component CbiM of cobalt ECF transporter |
Substrate-specific component CbiM of cobalt ECF transporter |
| cbiN |
Gene: CKL_3428: Additional substrate-specific component CbiN of cobalt ECF transporter |
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Gene: Ccel_1267: Additional substrate-specific component CbiN of cobalt ECF transporter |
Gene: null: Additional substrate-specific component CbiN of cobalt ECF transporter |
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Gene: CAC1366: Additional substrate-specific component CbiN of cobalt ECF transporter |
Gene: CBO0917A: Additional substrate-specific component CbiN of cobalt ECF transporter |
Gene: NT01CX_1330: Additional substrate-specific component CbiN of cobalt ECF transporter |
Gene: CPF_0186: Additional substrate-specific component CbiN of cobalt ECF transporter |
Gene: CD0325: Additional substrate-specific component CbiN of cobalt ECF transporter |
Gene: Cbei_3709: Additional substrate-specific component CbiN of cobalt ECF transporter |
Gene: Clos_1012: Additional substrate-specific component CbiN of cobalt ECF transporter |
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Gene: CLOSCI_03610: Additional substrate-specific component CbiN of cobalt ECF transporter |
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Gene: CLOHIR_01690: Additional substrate-specific component CbiN of cobalt ECF transporter |
Gene: CBY_1414: Additional substrate-specific component CbiN of cobalt ECF transporter |
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Gene: CLOBAR_01387: Additional substrate-specific component CbiN of cobalt ECF transporter |
Additional substrate-specific component CbiN of cobalt ECF transporter |
| cbiQ |
Gene: CKL_3427: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
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Gene: Ccel_1268: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
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Clostridium phytofermentans ISDg Site: position = -371 score = 50.16 sequence = GAAGTTGGGTGCAAT... Gene: null: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Gene: CTC00724: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Gene: CAC1367: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Gene: CBO0918: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Gene: NT01CX_1331: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Gene: CPF_0187: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Gene: CD0326: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Gene: Cbei_3712: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Gene: Clos_1013: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
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Gene: CLOSCI_03611: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
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Gene: CLOHIR_01691: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Gene: CBY_1417: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
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Gene: CLOBAR_01386: Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
Transmembrane component CbiQ of energizing module of cobalt ECF transporter |
| cysG1 |
Gene: CKL_2909: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
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Gene: CTC00726: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
Gene: CAC0096: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
Gene: CBO0919: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
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Gene: CPF_1689: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
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Gene: Cbei_1284: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
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Gene: CBY_3439: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
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Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) |
| hemC |
Gene: CKL_0718: Porphobilinogen deaminase (EC 2.5.1.61) |
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Gene: Ccel_1277: Porphobilinogen deaminase (EC 2.5.1.61) |
2
Clostridium phytofermentans ISDg Gene: null: Porphobilinogen deaminase (EC 2.5.1.61) Gene: null: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: CTC00727: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: CAC0097: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: CBO0920: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: NT01CX_0262: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: CPF_1688: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: CD3421: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: Cbei_1285: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: Clos_1327: Porphobilinogen deaminase (EC 2.5.1.61) |
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Gene: CLOHIR_00710: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: CBY_3440: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: CLOBOL_02876: Porphobilinogen deaminase (EC 2.5.1.61) |
Gene: CLOBAR_01407: Porphobilinogen deaminase (EC 2.5.1.61) |
Porphobilinogen deaminase (EC 2.5.1.61) |
| cobA-hemD |
Gene: CKL_0719: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
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Gene: Ccel_1278: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
2
Clostridium phytofermentans ISDg Gene: null: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) Gene: null: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CTC00728: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CAC0098: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CBO0921: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: NT01CX_0261: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CPF_1687: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CD3420: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: Cbei_1286: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: Clos_1328: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
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Gene: CLOHIR_00711: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CBY_3441: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CLOBOL_02875: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Gene: CLOBAR_01406: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) |
| CBO0922 |
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Gene: CBO0922: hypothetical protein |
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hypothetical protein |
| hemB |
Gene: CKL_0713: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: CLOSS21_01705: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: Ccel_1279: Porphobilinogen synthase (EC 4.2.1.24) |
2
Clostridium phytofermentans ISDg Gene: null: Porphobilinogen synthase (EC 4.2.1.24) Gene: null: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: CTC00729: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: CAC0100: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: CBO0923: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: NT01CX_0260: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: CPF_1686: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: CD3419: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: Cbei_1287: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: Clos_1329: Porphobilinogen synthase (EC 4.2.1.24) |
|
Gene: CLOSCI_03617: Porphobilinogen synthase (EC 4.2.1.24) |
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Gene: CLOHIR_01522: Porphobilinogen synthase (EC 4.2.1.24) |
Gene: CBY_3442: Porphobilinogen synthase (EC 4.2.1.24) |
|
Gene: CLOBAR_01405: Porphobilinogen synthase (EC 4.2.1.24) |
Porphobilinogen synthase (EC 4.2.1.24) |
| cbiA |
Gene: CKL_0722: Cobyrinic acid A,C-diamide synthase |
|
Gene: Ccel_1283: Cobyrinic acid A,C-diamide synthase |
Gene: null: Cobyrinic acid A,C-diamide synthase |
Gene: CTC00731: Cobyrinic acid A,C-diamide synthase |
Gene: CAC1375: Cobyrinic acid A,C-diamide synthase |
Gene: CBO0924: Cobyrinic acid A,C-diamide synthase |
*
Clostridium novyi NT Site: position = -301 score = 119.12 sequence = AAAATTGTATATTAG... Gene: NT01CX_0583: Cobyrinic acid A,C-diamide synthase |
|
Gene: CD3434: Cobyrinic acid A,C-diamide synthase |
Gene: Cbei_2310: Cobyrinic acid A,C-diamide synthase |
*
Clostridium sp. OhILAs Site: position = -309 score = 57.4 sequence = AATTTGGAAGCTGGG... Gene: Clos_0862: Cobyrinic acid A,C-diamide synthase |
|
Gene: CLOSCI_03597: Cobyrinic acid A,C-diamide synthase |
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Gene: CLOHIR_00696: Cobyrinic acid A,C-diamide synthase |
Gene: CBY_3394: Cobyrinic acid A,C-diamide synthase |
Gene: CLOBOL_01285: Cobyrinic acid A,C-diamide synthase |
Gene: CLOBAR_01421: Cobyrinic acid A,C-diamide synthase |
Cobyrinic acid A,C-diamide synthase |
| cbiC |
Gene: CKL_0723: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
|
Gene: Ccel_1285: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: null: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: CTC00732: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: CAC1376: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: CBO0925: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: NT01CX_0582: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: CPF_1435: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: CD3430: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: Cbei_2311: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: Clos_1015: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
|
Gene: CLOSCI_03606: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
|
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Gene: CLOHIR_00700: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: CBY_3395: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: CLOBOL_01277: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Gene: CLOBAR_01417: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
| CBO0926 |
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Gene: CBO0926: CAAX amino terminal protease family |
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CAAX amino terminal protease family |
| wrbA |
2
Clostridium kluyveri DSM 555 Gene: CKL_2875: Iron-sulfur flavoprotein Gene: CKL_3443: Iron-sulfur flavoprotein |
Gene: CLOSS21_01031: Iron-sulfur flavoprotein |
Gene: Ccel_0192: Iron-sulfur flavoprotein |
Gene: null: Iron-sulfur flavoprotein |
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Gene: CBO0927: Iron-sulfur flavoprotein |
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Gene: Cbei_4693: Iron-sulfur flavoprotein |
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Gene: CLOSCI_00616: Iron-sulfur flavoprotein |
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Gene: CBY_0932: Iron-sulfur flavoprotein |
|
Gene: CLOBAR_00639: Iron-sulfur flavoprotein |
Iron-sulfur flavoprotein |
| Cbei_2684 |
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Gene: CBO0928: HD domain protein |
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Gene: Cbei_2684: HD domain protein |
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Gene: CLOBOL_03585: HD domain protein |
|
HD domain protein |
| CBO0929 |
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Gene: CBO0929: hypothetical protein |
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hypothetical protein |
| CBO0930 |
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Gene: CBO0930: Transcriptional regulator, MerR family |
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Transcriptional regulator, MerR family |
| CBO0931 |
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Gene: CBO0931: Acetyltransferase (EC 2.3.1.-) |
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Gene: CBY_0929: Acetyltransferase (EC 2.3.1.-) |
|
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Acetyltransferase (EC 2.3.1.-) |
| CD0837 |
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Gene: CAC3555: Nitroreductase family protein |
Gene: CBO0933: Nitroreductase family protein |
|
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Gene: CD0837: Nitroreductase family protein |
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Gene: CLOSCI_01710: Nitroreductase family protein |
|
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Gene: CLOHIR_01882: Nitroreductase family protein |
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Gene: CLOBOL_04764: Nitroreductase family protein |
|
Nitroreductase family protein |
| CBO0934 |
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Gene: CBO0934: membrane protein |
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membrane protein |
| CBO0935 |
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Gene: CBO0935: Glutamate-rich protein grpB |
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Glutamate-rich protein grpB |
| cbiD |
Gene: CKL_0724: Cobalt-precorrin-6 synthase, anaerobic |
|
Gene: Ccel_1270: Cobalt-precorrin-6 synthase, anaerobic |
Gene: null: Cobalt-precorrin-6 synthase, anaerobic |
Gene: CTC00733: Cobalt-precorrin-6 synthase, anaerobic |
Gene: CAC1377: Cobalt-precorrin-6 synthase, anaerobic |
Gene: CBO0936: Cobalt-precorrin-6 synthase, anaerobic |
Gene: NT01CX_0581: Cobalt-precorrin-6 synthase, anaerobic |
Gene: CPF_1434: Cobalt-precorrin-6 synthase, anaerobic |
Gene: CD3429: Cobalt-precorrin-6 synthase, anaerobic |
Gene: Cbei_2312: Cobalt-precorrin-6 synthase, anaerobic |
Gene: Clos_1016: Cobalt-precorrin-6 synthase, anaerobic |
|
Gene: CLOSCI_03591: Cobalt-precorrin-6 synthase, anaerobic |
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Gene: CLOHIR_00701: Cobalt-precorrin-6 synthase, anaerobic |
Gene: CBY_3397: Cobalt-precorrin-6 synthase, anaerobic |
Gene: CLOBOL_01289: Cobalt-precorrin-6 synthase, anaerobic |
Gene: CLOBAR_01416: Cobalt-precorrin-6 synthase, anaerobic |
Cobalt-precorrin-6 synthase, anaerobic |
| cbiE |
Gene: CKL_0725: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
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Gene: CAC0584: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: CBO0937: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: NT01CX_0580: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: CPF_1433: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: CD3428: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: Cbei_2313: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: Clos_1017: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
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Gene: CLOHIR_00702: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Gene: CBY_3398: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
|
Gene: CLOBAR_01415: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) |
| CBO0938 |
|
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Gene: CBO0938: CAAX amino terminal protease family protein |
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Gene: CLOHIR_02183: CAAX amino terminal protease family protein |
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CAAX amino terminal protease family protein |
| cbiT |
Gene: CKL_0726: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
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Gene: CAC1378: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: CBO0939: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: NT01CX_0579: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: CPF_1432: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: CD3427: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: Cbei_2314: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: Clos_1018: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
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Gene: CLOHIR_00703: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Gene: CBY_3399: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
|
Gene: CLOBAR_01414: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
| CBO0940 |
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Gene: CBO0940: hypothetical protein |
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hypothetical protein |
| CBO0941 |
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Gene: CBO0941: hypothetical protein |
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hypothetical protein |
| CBO0941A |
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Gene: CBO0941A: membrane protein |
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membrane protein |
| CBO0942 |
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Gene: CBO0942: membrane protein |
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membrane protein |
| CBO0943 |
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Gene: CTC01427: hypothetical protein |
|
Gene: CBO0943: hypothetical protein |
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Gene: Clos_1895: hypothetical protein |
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hypothetical protein |
| CBO0944 |
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Gene: CBO0944: Predicted secreted nucleic acid binding protein |
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Predicted secreted nucleic acid binding protein |
| Cbei_3085 |
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Gene: CAC3465: Isochorismatase (EC 3.3.2.1) |
Gene: CBO0945: Isochorismatase (EC 3.3.2.1) |
|
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Gene: CD3632: Isochorismatase (EC 3.3.2.1) |
Gene: Cbei_3085: Isochorismatase (EC 3.3.2.1) |
|
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Gene: CBY_3090: Isochorismatase (EC 3.3.2.1) |
|
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Isochorismatase (EC 3.3.2.1) |
| cbiL |
Gene: CKL_0727: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
|
Gene: Ccel_1271: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: null: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: CTC00735: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: CAC1379: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: CBO0946: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: NT01CX_0578: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: CPF_1431: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
|
Gene: Cbei_2315: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: Clos_1023: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
|
Gene: CLOSCI_03592: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
|
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Gene: CLOHIR_00709: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: CBY_3400: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: CLOBOL_05125: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Gene: CLOBAR_01408: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
| cbiF |
Gene: CKL_0728: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
|
Gene: Ccel_1272: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: null: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: CTC00736: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: CAC1380: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: CBO0947: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: NT01CX_0577: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: CPF_1430: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: CD3426: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: Cbei_2316: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: Clos_1019: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
|
Gene: CLOSCI_03593: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
|
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Gene: CLOHIR_00704: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: CBY_3401: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: CLOBOL_01288: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Gene: CLOBAR_01413: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
| cbiG |
Gene: CKL_0716: Cobalamin biosynthesis protein CbiG |
|
Gene: Ccel_1273: Cobalamin biosynthesis protein CbiG |
Gene: null: Cobalamin biosynthesis protein CbiG |
Gene: CTC00737: Cobalamin biosynthesis protein CbiG |
Gene: CAC1370: Cobalamin biosynthesis protein CbiG |
Gene: CBO0948: Cobalamin biosynthesis protein CbiG |
Gene: NT01CX_0576: Cobalamin biosynthesis protein CbiG |
Gene: CPF_1429: Cobalamin biosynthesis protein CbiG |
Gene: CD3425: Cobalamin biosynthesis protein CbiG |
Gene: Cbei_2317: Cobalamin biosynthesis protein CbiG |
Gene: Clos_1020: Cobalamin biosynthesis protein CbiG |
|
Gene: CLOSCI_03594: Cobalamin biosynthesis protein CbiG |
|
|
Gene: CLOHIR_00705: Cobalamin biosynthesis protein CbiG |
Gene: CBY_3402: Cobalamin biosynthesis protein CbiG |
Gene: CLOBOL_01290: Cobalamin biosynthesis protein CbiG |
Gene: CLOBAR_01412: Cobalamin biosynthesis protein CbiG |
Cobalamin biosynthesis protein CbiG |
| cbiH |
Gene: CKL_0730: Cobalt-precorrin-3b C17-methyltransferase |
|
Gene: Ccel_1275: Cobalt-precorrin-3b C17-methyltransferase |
Gene: null: Cobalt-precorrin-3b C17-methyltransferase |
Gene: CTC00739: Cobalt-precorrin-3b C17-methyltransferase |
Gene: CAC1382: Cobalt-precorrin-3b C17-methyltransferase |
Gene: CBO0949: Cobalt-precorrin-3b C17-methyltransferase |
Gene: NT01CX_0575: Cobalt-precorrin-3b C17-methyltransferase |
Gene: CPF_1428: Cobalt-precorrin-3b C17-methyltransferase |
Gene: CD3424: Cobalt-precorrin-3b C17-methyltransferase |
Gene: Cbei_1257: Cobalt-precorrin-3b C17-methyltransferase |
2
Clostridium sp. OhILAs Gene: Clos_1325: Cobalt-precorrin-3b C17-methyltransferase Gene: Clos_1021: Cobalt-precorrin-3b C17-methyltransferase |
|
Gene: CLOSCI_03595: Cobalt-precorrin-3b C17-methyltransferase |
|
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Gene: CLOHIR_00706: Cobalt-precorrin-3b C17-methyltransferase |
Gene: CBY_3403: Cobalt-precorrin-3b C17-methyltransferase |
|
Gene: CLOBAR_01411: Cobalt-precorrin-3b C17-methyltransferase |
Cobalt-precorrin-3b C17-methyltransferase |
| cbiJ |
Gene: CKL_0729: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
|
Gene: Ccel_1276: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: null: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: CTC00740: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: CAC1381: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: CBO0950: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: NT01CX_0574: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: CPF_1427: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: CD3423: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: Cbei_1258: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
2
Clostridium sp. OhILAs Gene: Clos_1326: Cobalt-precorrin-6x reductase (EC 1.3.1.54) Gene: Clos_1022: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
|
Gene: CLOSCI_03596: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
|
|
Gene: CLOHIR_00707: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: CBY_3404: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: CLOBOL_01287: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Gene: CLOBAR_01410: Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
Cobalt-precorrin-6x reductase (EC 1.3.1.54) |
| cblT |
|
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|
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Gene: CTC00741: Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole |
|
Gene: CBO0951: Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole |
|
*
Clostridium perfringens ATCC 13124 Site: position = -544 score = 89.44 sequence = AAATAAAATAAGAGC... Gene: CPF_1515: Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole |
|
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Gene: Clos_2207: Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole |
|
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Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole |
| cbiK |
Gene: CKL_0720: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
|
|
Gene: null: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
Gene: CTC00743: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
2
Clostridium acetobutylicum ATCC 824 Gene: CAC1373: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) Gene: CAC0583: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
Gene: CBO0952: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
Gene: NT01CX_0573: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
*
Clostridium perfringens ATCC 13124 Site: position = -302 score = 115.43 sequence = ATAATATTTTATATT... Gene: CPF_1436: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -449 score = 79.31 sequence = ATAAGAAATGATTTT... Gene: Cbei_2309: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
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|
|
Gene: CLOHIR_00708: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
*
Clostridium butyricum 5521 Site: position = -357 score = 110.87 sequence = TAATAAATATGATTA... Gene: CBY_3393: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
Gene: CLOBOL_05117: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
Gene: CLOBAR_01409: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
| pduX |
Gene: CKL_0717: Threonine kinase in B12 biosynthesis |
|
|
|
Gene: CTC00786: Threonine kinase in B12 biosynthesis |
Gene: CAC1371: Threonine kinase in B12 biosynthesis |
Gene: CBO0953: Threonine kinase in B12 biosynthesis |
|
|
Gene: CD3431: Threonine kinase in B12 biosynthesis |
|
|
|
|
|
|
Gene: CLOHIR_00699: Threonine kinase in B12 biosynthesis |
|
|
Gene: CLOBAR_01418: Threonine kinase in B12 biosynthesis |
Threonine kinase in B12 biosynthesis |
| btuR |
Gene: CKL_0715: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
|
|
2
Clostridium phytofermentans ISDg Gene: null: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) Gene: null: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
2
Clostridium tetani E88 Gene: CTC00744: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) Gene: CTC00746: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
|
Gene: CBO0954: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: NT01CX_0356: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
|
|
Gene: Cbei_1263: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
|
|
Gene: CLOSCI_02251: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
|
|
|
Gene: CBY_1515: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: CLOBOL_05368: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
|
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
| hemA |
Gene: CKL_0657: Glutamyl-tRNA reductase (EC 1.2.1.70) |
2
Clostridium sp. SS2/1 Gene: CLOSS21_01703: Glutamyl-tRNA reductase (EC 1.2.1.70) Gene: CLOSS21_00303: Glutamyl-tRNA reductase (EC 1.2.1.70) |
Gene: Ccel_1274: Glutamyl-tRNA reductase (EC 1.2.1.70) |
*2
Clostridium phytofermentans ISDg Gene: null: Glutamyl-tRNA reductase (EC 1.2.1.70) Site: position = -362 score = 109.4 sequence = ACAATTTAGATCTTT... Gene: null: Glutamyl-tRNA reductase (EC 1.2.1.70) |
Gene: CTC00725: Glutamyl-tRNA reductase (EC 1.2.1.70) |
Gene: CAC0095: Glutamyl-tRNA reductase (EC 1.2.1.70) |
|
Gene: NT01CX_0264: Glutamyl-tRNA reductase (EC 1.2.1.70) |
Gene: CPF_1690: Glutamyl-tRNA reductase (EC 1.2.1.70) |
Gene: CD2968: Glutamyl-tRNA reductase (EC 1.2.1.70) |
Gene: Cbei_1283: Glutamyl-tRNA reductase (EC 1.2.1.70) |
Gene: Clos_1324: Glutamyl-tRNA reductase (EC 1.2.1.70) |
|
|
|
|
|
Gene: CBY_3438: Glutamyl-tRNA reductase (EC 1.2.1.70) |
|
Gene: CLOBAR_01428: Glutamyl-tRNA reductase (EC 1.2.1.70) |
Glutamyl-tRNA reductase (EC 1.2.1.70) |
| hemL |
Gene: CKL_0658: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: CLOSS21_01704: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: Ccel_1280: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
2
Clostridium phytofermentans ISDg Gene: null: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) Gene: null: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: CTC00730: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: CAC0099: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
|
Gene: NT01CX_0259: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: CPF_1685: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
|
Gene: Cbei_1288: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Gene: Clos_1330: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
|
|
|
|
|
Gene: CBY_3443: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
|
Gene: CLOBAR_01427: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) |
| cbiET |
|
|
Gene: Ccel_1282: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
|
Gene: CTC00734: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
|
|
|
|
|
|
|
|
|
|
|
|
|
Gene: CLOBOL_01286: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
|
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
| cblS |
|
|
|
|
Gene: CTC00742: Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis |
|
Gene: CBO0822: Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis |
|
Gene: CPF_1514: Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis |
|
|
Gene: Clos_2206: Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis |
|
|
|
|
|
|
|
|
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis |
| cbiO |
Gene: CKL_3426: ATPase component CbiO of energizing module of cobalt ECF transporter |
|
Gene: Ccel_1269: ATPase component CbiO of energizing module of cobalt ECF transporter |
Gene: null: ATPase component CbiO of energizing module of cobalt ECF transporter |
|
Gene: CAC1368: ATPase component CbiO of energizing module of cobalt ECF transporter |
|
Gene: NT01CX_1332: ATPase component CbiO of energizing module of cobalt ECF transporter |
Gene: CPF_0188: ATPase component CbiO of energizing module of cobalt ECF transporter |
Gene: CD0327: ATPase component CbiO of energizing module of cobalt ECF transporter |
Gene: Cbei_3711: ATPase component CbiO of energizing module of cobalt ECF transporter |
Gene: Clos_1014: ATPase component CbiO of energizing module of cobalt ECF transporter |
|
Gene: CLOSCI_03612: ATPase component CbiO of energizing module of cobalt ECF transporter |
|
|
Gene: CLOHIR_01692: ATPase component CbiO of energizing module of cobalt ECF transporter |
Gene: CBY_1416: ATPase component CbiO of energizing module of cobalt ECF transporter |
|
Gene: CLOBAR_01385: ATPase component CbiO of energizing module of cobalt ECF transporter |
ATPase component CbiO of energizing module of cobalt ECF transporter |
| cbiX |
|
|
Gene: Ccel_1281: Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) |
| sstT |
|
Gene: CLOSS21_01676: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
|
Gene: CLOSCI_01572: hypothetical protein |
|
|
|
|
|
2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_01404: hypothetical protein Gene: CLOBAR_01403: hypothetical protein |
hypothetical protein |
| cysG3 |
|
Gene: CLOSS21_01706: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
|
2
Clostridium phytofermentans ISDg Gene: null: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) Gene: null: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
|
|
|
Gene: NT01CX_0263: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
|
Gene: CD3418: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
|
|
|
Gene: CLOSCI_03615: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
|
|
Gene: CLOHIR_00112: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
|
Gene: CLOBOL_02877: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
Gene: CLOBAR_01402: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) |
| cobT |
Gene: CKL_2908: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
|
Gene: Ccel_0646: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
*
Clostridium phytofermentans ISDg Site: position = -429 score = 95.93 sequence = AAAATATAATGTAGA... Gene: null: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
*
Clostridium tetani E88 Site: position = -410 score = 111.09 sequence = AATTTAATATTAGAT... Gene: CTC02290: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: CAC1372: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
|
*
Clostridium novyi NT Site: position = -298 score = 106.96 sequence = AATTAAATAAGTCAT... Gene: NT01CX_2077: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: CPF_1289: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: CD3439: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: Cbei_1262: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
|
|
Gene: CLOSCI_03598: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
|
|
Gene: CLOHIR_02222: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: CBY_0383: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: CLOBOL_01284: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Gene: CLOBAR_01426: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
| cobU |
Gene: CKL_0731: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
|
Gene: Ccel_0644: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: null: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: CTC00718: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: CAC1383: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: CBO0911: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: NT01CX_2078: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: CPF_1290: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: CD3438: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Cbei_1264: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: Clos_2210: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
|
Gene: CLOSCI_03599: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
|
|
Gene: CLOHIR_02223: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: CBY_0384: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: CLOBOL_01283: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Gene: CLOBAR_01425: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) |
| cobS |
Gene: CKL_3341: Cobalamin synthase |
|
Gene: Ccel_0645: Cobalamin synthase |
Gene: null: Cobalamin synthase |
Gene: CTC00719: Cobalamin synthase |
Gene: CAC1384: Cobalamin synthase |
Gene: CBO0821: Cobalamin synthase |
Gene: NT01CX_2079: Cobalamin synthase |
Gene: CPF_1291: Cobalamin synthase |
Gene: CD3437: Cobalamin synthase |
Gene: Cbei_1265: Cobalamin synthase |
Gene: Clos_2209: Cobalamin synthase |
|
Gene: CLOSCI_03600: Cobalamin synthase |
|
|
Gene: CLOHIR_02224: Cobalamin synthase |
Gene: CBY_0385: Cobalamin synthase |
Gene: CLOBOL_01282: Cobalamin synthase |
Gene: CLOBAR_01424: Cobalamin synthase |
Cobalamin synthase |
| cobC |
Gene: CKL_0732: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
|
|
Gene: null: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: CTC00717: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: CAC1385: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: CBO0819: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: NT01CX_2080: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: CPF_1293: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: CD3436: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: Cbei_1267: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: Clos_2208: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
|
Gene: CLOSCI_03602: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
|
|
Gene: CLOHIR_02225: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Gene: CBY_0387: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
|
Gene: CLOBAR_01423: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) |
| cbiKL |
|
|
|
|
|
|
|
|
|
Gene: CD3422: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) / Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
|
|
|
|
|
|
|
|
|
|
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) / Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
| CBY_3396 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Gene: CBY_3396: hypothetical protein |
|
|
hypothetical protein |
| Cbei_1273 |
|
|
|
|
|
|
|
|
|
|
Gene: Cbei_1273: hypothetical protein |
|
|
|
|
|
|
Gene: CBY_3408: hypothetical protein |
|
|
hypothetical protein |
| btuF |
|
|
*
Clostridium cellulolyticum H10 Site: position = -322 score = 78.95 sequence = TTTTATATTAATATA... Gene: Ccel_3204: Vitamin B12 ABC transporter, B12-binding component BtuF |
*
Clostridium phytofermentans ISDg Site: position = -401 score = 107.93 sequence = AATAATTGCGACCAT... Gene: null: Vitamin B12 ABC transporter, B12-binding component BtuF |
*2
Clostridium tetani E88 Gene: CTC00785: Vitamin B12 ABC transporter, B12-binding component BtuF Site: position = -301 score = 100.54 sequence = AATGTTTTATGAAAA... Gene: CTC00960: Vitamin B12 ABC transporter, B12-binding component BtuF |
|
2
Clostridium botulinum A str. ATCC 3502 Gene: CBO0301: Vitamin B12 ABC transporter, B12-binding component BtuF Gene: CBO1337: Vitamin B12 ABC transporter, B12-binding component BtuF |
Gene: NT01CX_2084: Vitamin B12 ABC transporter, B12-binding component BtuF |
*2
Clostridium perfringens ATCC 13124 Gene: CPF_1426: Vitamin B12 ABC transporter, B12-binding component BtuF Site: position = -488 score = 84.15 sequence = TTGATTAACTAATAA... Gene: CPF_1296: Vitamin B12 ABC transporter, B12-binding component BtuF |
|
2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_4504: Vitamin B12 ABC transporter, B12-binding component BtuF Gene: Cbei_3702: Vitamin B12 ABC transporter, B12-binding component BtuF |
*
Clostridium sp. OhILAs Site: position = -313 score = 116.3 sequence = ACGAATTCAATATAG... Gene: Clos_0915: Vitamin B12 ABC transporter, B12-binding component BtuF |
|
|
|
|
|
|
|
2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_00815: Vitamin B12 ABC transporter, B12-binding component BtuF Gene: CLOBAR_02761: Vitamin B12 ABC transporter, B12-binding component BtuF |
Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC |
|
|
Gene: Ccel_3203: Vitamin B12 ABC transporter, permease component BtuC |
Gene: null: Vitamin B12 ABC transporter, permease component BtuC |
2
Clostridium tetani E88 Gene: CTC00784: Vitamin B12 ABC transporter, permease component BtuC Gene: CTC00961: Vitamin B12 ABC transporter, permease component BtuC |
|
2
Clostridium botulinum A str. ATCC 3502 Gene: CBO0302: Vitamin B12 ABC transporter, permease component BtuC Gene: CBO1338: Vitamin B12 ABC transporter, permease component BtuC |
Gene: NT01CX_2085: Vitamin B12 ABC transporter, permease component BtuC |
2
Clostridium perfringens ATCC 13124 Gene: CPF_1425: Vitamin B12 ABC transporter, permease component BtuC Gene: CPF_1297: Vitamin B12 ABC transporter, permease component BtuC |
|
2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_4502: Vitamin B12 ABC transporter, permease component BtuC Gene: Cbei_3703: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Clos_0916: Vitamin B12 ABC transporter, permease component BtuC |
|
|
|
|
|
|
|
2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_00814: Vitamin B12 ABC transporter, permease component BtuC Gene: CLOBAR_02760: Vitamin B12 ABC transporter, permease component BtuC |
Vitamin B12 ABC transporter, permease component BtuC |
| btuD |
|
|
Gene: Ccel_3202: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: null: Vitamin B12 ABC transporter, ATPase component BtuD |
2
Clostridium tetani E88 Gene: CTC00783: Vitamin B12 ABC transporter, ATPase component BtuD Gene: CTC00962: Vitamin B12 ABC transporter, ATPase component BtuD |
|
2
Clostridium botulinum A str. ATCC 3502 Gene: CBO0303: Vitamin B12 ABC transporter, ATPase component BtuD Gene: CBO1339: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: NT01CX_2086: Vitamin B12 ABC transporter, ATPase component BtuD |
2
Clostridium perfringens ATCC 13124 Gene: CPF_1424: Vitamin B12 ABC transporter, ATPase component BtuD Gene: CPF_1298: Vitamin B12 ABC transporter, ATPase component BtuD |
|
2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_4503: Vitamin B12 ABC transporter, ATPase component BtuD Gene: Cbei_3704: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Clos_0917: Vitamin B12 ABC transporter, ATPase component BtuD |
|
|
|
|
|
|
|
2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_00813: Vitamin B12 ABC transporter, ATPase component BtuD Gene: CLOBAR_02759: Vitamin B12 ABC transporter, ATPase component BtuD |
Vitamin B12 ABC transporter, ATPase component BtuD |
| cobU2 |
|
|
|
Gene: null: cobalamin biosynthesis protein CobU, putative, truncation |
|
|
|
|
Gene: CPF_1292: cobalamin biosynthesis protein CobU, putative, truncation |
|
Gene: Cbei_1266: cobalamin biosynthesis protein CobU, putative, truncation |
|
|
Gene: CLOSCI_03601: cobalamin biosynthesis protein CobU, putative, truncation |
|
|
|
Gene: CBY_0386: cobalamin biosynthesis protein CobU, putative, truncation |
Gene: CLOBOL_01281: cobalamin biosynthesis protein CobU, putative, truncation |
|
cobalamin biosynthesis protein CobU, putative, truncation |
| Fnod_1372 |
|
|
|
|
|
|
|
|
Gene: CPF_1299: conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71 |
Gene: CD1417: conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71 |
Gene: Cbei_1271: conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71 |
|
|
|
|
|
Gene: CLOHIR_00210: conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71 |
|
|
Gene: CLOBAR_02072: conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71 |
conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71 |
| btuF1 |
|
|
|
|
*
Clostridium tetani E88 Site: position = -324 score = 103.17 sequence = CATTTATAGAATAAA... Gene: CTC01372: Vitamin B12 ABC transporter, B12-binding component BtuF |
*
Clostridium acetobutylicum ATCC 824 Site: position = -338 score = 119.75 sequence = AATAATACCATATTT... Gene: CAC2441: Vitamin B12 ABC transporter, B12-binding component BtuF |
|
|
|
*
Clostridium difficile 630 Site: position = -401 score = 107.07 sequence = TAAATTAAAATAATA... Gene: CD2999: Vitamin B12 ABC transporter, B12-binding component BtuF |
|
*
Clostridium sp. OhILAs Site: position = -340 score = 107.54 sequence = TGAATATCAAAGTAT... Gene: Clos_0948: Vitamin B12 ABC transporter, B12-binding component BtuF |
|
|
|
|
|
|
Gene: CLOBOL_05119: Vitamin B12 ABC transporter, B12-binding component BtuF |
|
Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC1 |
|
|
|
|
Gene: CTC01371: Vitamin B12 ABC transporter, permease component BtuC |
Gene: CAC2442: Vitamin B12 ABC transporter, permease component BtuC |
|
|
|
Gene: CD2998: Vitamin B12 ABC transporter, permease component BtuC |
|
Gene: Clos_0949: Vitamin B12 ABC transporter, permease component BtuC |
|
|
|
|
|
|
Gene: CLOBOL_05120: Vitamin B12 ABC transporter, permease component BtuC |
|
Vitamin B12 ABC transporter, permease component BtuC |
| btuD1 |
|
|
|
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Gene: CTC01370: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: CAC2443: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: CD2997: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: Clos_0950: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: CLOBOL_05121: Vitamin B12 ABC transporter, ATPase component BtuD |
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Vitamin B12 ABC transporter, ATPase component BtuD |
| crdX |
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Gene: CAC2444: Cobalamine-related hypothetical metal-binding protein CrdX |
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Gene: CD0787: Cobalamine-related hypothetical metal-binding protein CrdX |
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Gene: Clos_2205: Cobalamine-related hypothetical metal-binding protein CrdX |
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Gene: CLOHIR_01859: Cobalamine-related hypothetical metal-binding protein CrdX |
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Gene: CLOBAR_01221: Cobalamine-related hypothetical metal-binding protein CrdX |
Cobalamine-related hypothetical metal-binding protein CrdX |
| CTC00745 |
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*
Clostridium tetani E88 Site: position = -277 score = 98.17 sequence = ATAATATGAATAAAA... Gene: CTC00745: ferredoxin-like protein |
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ferredoxin-like protein |
| CRON 7. | |||||||||||||||||||||
| nikA |
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Gene: CBY_0431: nickel ABC transporter, periplasmic nickel-binding protein |
*
Clostridium bolteae ATCC BAA-613 Site: position = -325 score = 104.86 sequence = CGAACATAACCGTAT... Gene: CLOBOL_07302: nickel ABC transporter, periplasmic nickel-binding protein |
Gene: CLOBAR_00449: nickel ABC transporter, periplasmic nickel-binding protein |
nickel ABC transporter, periplasmic nickel-binding protein |
| nikB |
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Gene: CBY_0430: nickel ABC transporter, permease subunit NikB |
Gene: CLOBOL_07303: nickel ABC transporter, permease subunit NikB |
Gene: CLOBAR_00450: nickel ABC transporter, permease subunit NikB |
nickel ABC transporter, permease subunit NikB |
| nikC |
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Gene: CBY_0429: nickel ABC transporter, permease subunit NikC |
Gene: CLOBOL_07304: nickel ABC transporter, permease subunit NikC |
Gene: CLOBAR_00451: nickel ABC transporter, permease subunit NikC |
nickel ABC transporter, permease subunit NikC |
| dppD |
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2
Clostridium butyricum 5521 Gene: CBY_0428: oligopeptide transport ATP-binding protein OppD Gene: CBY_0427: oligopeptide transport ATP-binding protein OppD |
2
Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_07305: oligopeptide transport ATP-binding protein OppD Gene: CLOBOL_07306: oligopeptide transport ATP-binding protein OppD |
2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_00452: oligopeptide transport ATP-binding protein OppD Gene: CLOBAR_00453: oligopeptide transport ATP-binding protein OppD |
oligopeptide transport ATP-binding protein OppD |
| metE |
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Gene: CLOBOL_07307: hypothetical protein |
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hypothetical protein |
| CRON 8. | |||||||||||||||||||||
| dppA |
Gene: CKL_1049: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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*
Clostridium tetani E88 Site: position = -288 score = 100.81 sequence = TTAATATAATAAGAC... Gene: CTC01379: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
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Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) |
| dppB |
Gene: CKL_1050: Putative glutathione transporter, permease component |
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Gene: CTC01378: Putative glutathione transporter, permease component |
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Putative glutathione transporter, permease component |
| dppC |
Gene: CKL_1051: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) |
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Gene: CTC01377: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) |
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Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) |
| dppD |
2
Clostridium kluyveri DSM 555 Gene: CKL_1052: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) Gene: CKL_1053: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) |
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2
Clostridium tetani E88 Gene: CTC01376: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) Gene: CTC01375: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) |
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Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) |
| CRON 9. | |||||||||||||||||||||
| CLOBAR_00570 |
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*
Clostridium bartlettii DSM 16795 Site: position = -320 score = 94.4 sequence = AAAAATAAGTAGTTA... Gene: CLOBAR_00570: hypothetical protein |
hypothetical protein |
| dppB |
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Gene: CLOBAR_00569: hypothetical protein |
hypothetical protein |
| dppC |
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Gene: CLOBAR_00568: hypothetical protein |
hypothetical protein |
| dppA |
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Gene: CLOBAR_00567: hypothetical protein |
hypothetical protein |
| dppD |
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2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_00566: hypothetical protein Gene: CLOBAR_00565: hypothetical protein |
hypothetical protein |
| CRON 10. | |||||||||||||||||||||
| btuF |
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*
Clostridium sp. OhILAs Site: position = -297 score = 48.69 sequence = ATAAAATATTTAAAA... Gene: Clos_2330: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC |
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Gene: Clos_2329: Vitamin B12 ABC transporter, permease component BtuC |
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Vitamin B12 ABC transporter, permease component BtuC |
| cobN |
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Gene: Clos_2328: Cobalt chelatase CobN subunit |
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Cobalt chelatase CobN subunit |
| chlI |
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Gene: Clos_2327: Cobalt chelatase ChiI subunit |
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Cobalt chelatase ChiI subunit |
| chlD |
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Gene: Clos_2326: Cobalt chelatase ChiD subunit |
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Cobalt chelatase ChiD subunit |
| CRON 11. | |||||||||||||||||||||
| btuF |
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Gene: null: Vitamin B12 ABC transporter, B12-binding component BtuF |
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*
Clostridium sp. OhILAs Site: position = -343 score = 125.97 sequence = AAATGAATACATTTT... Gene: Clos_0318: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Gene: CLOLEP_00034: Vitamin B12 ABC transporter, B12-binding component BtuF |
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Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC |
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Gene: null: Vitamin B12 ABC transporter, permease component BtuC |
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Gene: Clos_0319: Vitamin B12 ABC transporter, permease component BtuC |
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Gene: CLOLEP_00035: Vitamin B12 ABC transporter, permease component BtuC |
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Vitamin B12 ABC transporter, permease component BtuC |
| btuD |
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Gene: null: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: Clos_0320: Vitamin B12 ABC transporter, ATPase component BtuD |
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Gene: CLOLEP_00036: Vitamin B12 ABC transporter, ATPase component BtuD |
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Vitamin B12 ABC transporter, ATPase component BtuD |
| Clos_0321 |
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Gene: Clos_0321: ABC transporter ATP-binding protein |
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ABC transporter ATP-binding protein |
| Clos_0322 |
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Gene: Clos_0322: ABC transporter, permease protein |
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ABC transporter, permease protein |
| cbiK |
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Gene: Clos_0323: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) / Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
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Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) / Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
| CRON 12. | |||||||||||||||||||||
| CLONEX_02595 |
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*
Clostridium nexile DSM 1787 Site: position = -393 score = 110.5 sequence = AGAGTGAAAATGTAT... Gene: CLONEX_02595: hypothetical protein |
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hypothetical protein |
| CLONEX_02596 |
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Gene: CLONEX_02596: hypothetical protein |
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hypothetical protein |
| CLOLEP_00713 |
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Clostridium sp. SS2/1 Site: position = -306 score = 91.3 sequence = GAAATGCATAATTTC... Gene: CLOSS21_00425: hypothetical protein |
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Gene: CLOL250_02121: hypothetical protein |
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Gene: CLONEX_02597: hypothetical protein |
Gene: CLOLEP_00713: hypothetical protein |
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hypothetical protein |
| cbrV |
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Gene: CLOSS21_00426: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
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Gene: CTC00751: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
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Gene: CLOL250_02122: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
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Gene: CLONEX_02598: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
Gene: CLOLEP_00714: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
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Gene: CLOBAR_00416: Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter |
| cbrU |
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Gene: CLOSS21_00427: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
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2
Clostridium tetani E88 Gene: CTC00752: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter Gene: CTC00753: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
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Gene: CLOL250_02123: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
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Gene: CLONEX_02599: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
Gene: CLOLEP_00715: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
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Gene: CLOBAR_00417: Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter |
| cbrT |
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Gene: CLOSS21_00428: Substrate-specific component CbrT of predicted cobalamin ECF transporter |
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Gene: CTC00754: Substrate-specific component CbrT of predicted cobalamin ECF transporter |
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Gene: CLONEX_02600: Substrate-specific component CbrT of predicted cobalamin ECF transporter |
Gene: CLOLEP_00716: Substrate-specific component CbrT of predicted cobalamin ECF transporter |
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Substrate-specific component CbrT of predicted cobalamin ECF transporter |
| CLOLEP_00712 |
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*
Clostridium leptum DSM 753 Site: position = -293 score = 99.55 sequence = TCGGTCAATAGTCTT... Gene: CLOLEP_00712: hypothetical protein |
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hypothetical protein |
| btuR |
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Gene: CLOLEP_00717: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
| CLOSS21_00429 |
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Gene: CLOSS21_00429: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |