Regulon of Cobalamin in Clostridium phytofermentans ISDg

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Regulog:	Cobalamin - Clostridiaceae
Under regulation:
- Genes	32
- Operons	4

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -429 Score: 95.9 Sequence: AAAATATAATGTAGA... Locus tag: null Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Locus tag: null Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Locus tag: null Name: cobS Funciton: Cobalamin synthase Locus tag: null Name: cobU2 Funciton: cobalamin biosynthesis protein CobU, putative, truncation Locus tag: null Name: cobC Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) Locus tag: null Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase Locus tag: null Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Locus tag: null Name: cbiP Funciton: Cobyric acid synthase Locus tag: null Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
	null	cobT	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
	null	cobU	Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
	null	cobS	Cobalamin synthase
	null	cobU2	cobalamin biosynthesis protein CobU, putative, truncation
	null	cobC	Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
	null	cbiB	Adenosylcobinamide-phosphate synthase
	null	cobD	L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
	null	cbiP	Cobyric acid synthase
	null	btuR	Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Position: -401 Score: 107.9 Sequence: AATAATTGCGACCAT... Locus tag: null Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF Locus tag: null Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC Locus tag: null Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
	null	btuF	Vitamin B12 ABC transporter, B12-binding component BtuF
	null	btuC	Vitamin B12 ABC transporter, permease component BtuC
	null	btuD	Vitamin B12 ABC transporter, ATPase component BtuD
Position: -371 Score: 50.2 Sequence: GAAGTTGGGTGCAAT... Locus tag: null Name: cbiQ Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter Locus tag: null Name: cbiO Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter Locus tag: null Name: cbiM Funciton: Substrate-specific component CbiM of cobalt ECF transporter Locus tag: null Name: cbiN Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter Locus tag: null Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
	null	cbiQ	Transmembrane component CbiQ of energizing module of cobalt ECF transporter
	null	cbiO	ATPase component CbiO of energizing module of cobalt ECF transporter
	null	cbiM	Substrate-specific component CbiM of cobalt ECF transporter
	null	cbiN	Additional substrate-specific component CbiN of cobalt ECF transporter
	null	cbiK	Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Position: -362 Score: 109.4 Sequence: ACAATTTAGATCTTT... Locus tag: null Name: hemA Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70) Locus tag: null Name: cysG3 Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) Locus tag: null Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61) Locus tag: null Name: cobA-hemD Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) Locus tag: null Name: hemB Funciton: Porphobilinogen synthase (EC 4.2.1.24) Locus tag: null Name: hemL Funciton: Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) Locus tag: null Name: cbiD Funciton: Cobalt-precorrin-6 synthase, anaerobic Locus tag: null Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Locus tag: null Name: cbiF Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) Locus tag: null Name: cbiG Funciton: Cobalamin biosynthesis protein CbiG Locus tag: null Name: cbiH Funciton: Cobalt-precorrin-3b C17-methyltransferase Locus tag: null Name: cbiJ Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54) Locus tag: null Name: cbiA Funciton: Cobyrinic acid A,C-diamide synthase Locus tag: null Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) Locus tag: null Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
	null	hemA	Glutamyl-tRNA reductase (EC 1.2.1.70)
	null	cysG3	Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76)
	null	hemC	Porphobilinogen deaminase (EC 2.5.1.61)
	null	cobA-hemD	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
	null	hemB	Porphobilinogen synthase (EC 4.2.1.24)
	null	hemL	Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8)
	null	cbiD	Cobalt-precorrin-6 synthase, anaerobic
	null	cbiL	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
	null	cbiF	Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
	null	cbiG	Cobalamin biosynthesis protein CbiG
	null	cbiH	Cobalt-precorrin-3b C17-methyltransferase
	null	cbiJ	Cobalt-precorrin-6x reductase (EC 1.3.1.54)
	null	cbiA	Cobyrinic acid A,C-diamide synthase
	null	btuR	Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
	null	cbiC	Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Cobalamin in Clostridium phytofermentans ISDg

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --