Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Cobalamin in Clostridium sp. OhILAs

Properties
Regulator type: RNA regulatory element
Name: Cobalamin
RFAM: RF00174
Regulation mode:
Biological process: Cobalamin biosynthesis
Effector: Adenosylcobalamin
Regulog: Cobalamin - Clostridiaceae
Under regulation:
- Genes 43
- Operons 8
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -432
Score: 121.8
Sequence: GTAAATAAGAAGCAT...
Locus tag: Clos_1011
Name: cbiM
Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: Clos_1012
Name: cbiN
Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: Clos_1013
Name: cbiQ
Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: Clos_1014
Name: cbiO
Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
Locus tag: Clos_1015
Name: cbiC
Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: Clos_1016
Name: cbiD
Funciton: Cobalt-precorrin-6 synthase, anaerobic
Locus tag: Clos_1017
Name: cbiE
Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)
Locus tag: Clos_1018
Name: cbiT
Funciton: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: Clos_1019
Name: cbiF
Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: Clos_1020
Name: cbiG
Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: Clos_1021
Name: cbiH
Funciton: Cobalt-precorrin-3b C17-methyltransferase
Locus tag: Clos_1022
Name: cbiJ
Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54)
Locus tag: Clos_1023
Name: cbiL
Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Clos_1011
cbiM
Substrate-specific component CbiM of cobalt ECF transporter
Clos_1012
cbiN
Additional substrate-specific component CbiN of cobalt ECF transporter
Clos_1013
cbiQ
Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Clos_1014
cbiO
ATPase component CbiO of energizing module of cobalt ECF transporter
Clos_1015
cbiC
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Clos_1016
cbiD
Cobalt-precorrin-6 synthase, anaerobic
Clos_1017
cbiE
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)
Clos_1018
cbiT
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Clos_1019
cbiF
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Clos_1020
cbiG
Cobalamin biosynthesis protein CbiG
Clos_1021
cbiH
Cobalt-precorrin-3b C17-methyltransferase
Clos_1022
cbiJ
Cobalt-precorrin-6x reductase (EC 1.3.1.54)
Clos_1023
cbiL
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Position: -340
Score: 107.5
Sequence: TGAATATCAAAGTAT...
Locus tag: Clos_0948
Name: btuF1
Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Clos_0949
Name: btuC1
Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Clos_0950
Name: btuD1
Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Clos_0948
btuF1
Vitamin B12 ABC transporter, B12-binding component BtuF
Clos_0949
btuC1
Vitamin B12 ABC transporter, permease component BtuC
Clos_0950
btuD1
Vitamin B12 ABC transporter, ATPase component BtuD
Position: -313
Score: 116.3
Sequence: ACGAATTCAATATAG...
Locus tag: Clos_0915
Name: btuF
Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Clos_0916
Name: btuC
Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Clos_0917
Name: btuD
Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Clos_0915
btuF
Vitamin B12 ABC transporter, B12-binding component BtuF
Clos_0916
btuC
Vitamin B12 ABC transporter, permease component BtuC
Clos_0917
btuD
Vitamin B12 ABC transporter, ATPase component BtuD
Position: -309
Score: 57.4
Sequence: AATTTGGAAGCTGGG...
Locus tag: Clos_0862
Name: cbiA
Funciton: Cobyrinic acid A,C-diamide synthase
Locus tag: Clos_0863
Name: cbiP
Funciton: Cobyric acid synthase
Clos_0862
cbiA
Cobyrinic acid A,C-diamide synthase
Clos_0863
cbiP
Cobyric acid synthase
Position: -319
Score: 118.4
Sequence: ACAAATTAAATAGTT...
Locus tag: Clos_2212
Name: cbiB
Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: Clos_2211
Name: cobD
Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: Clos_2210
Name: cobU
Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: Clos_2209
Name: cobS
Funciton: Cobalamin synthase
Locus tag: Clos_2208
Name: cobC
Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
Locus tag: Clos_2207
Name: cblT
Funciton: Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole
Locus tag: Clos_2206
Name: cblS
Funciton: Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis
Clos_2212
cbiB
Adenosylcobinamide-phosphate synthase
Clos_2211
cobD
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Clos_2210
cobU
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Clos_2209
cobS
Cobalamin synthase
Clos_2208
cobC
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
Clos_2207
cblT
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole
Clos_2206
cblS
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis
Position: -297
Score: 48.7
Sequence: ATAAAATATTTAAAA...
Locus tag: Clos_2330
Name: btuF
Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Clos_2329
Name: btuC
Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Clos_2328
Name: cobN
Funciton: Cobalt chelatase CobN subunit
Locus tag: Clos_2327
Name: chlI
Funciton: Cobalt chelatase ChiI subunit
Locus tag: Clos_2326
Name: chlD
Funciton: Cobalt chelatase ChiD subunit
Clos_2330
btuF
Vitamin B12 ABC transporter, B12-binding component BtuF
Clos_2329
btuC
Vitamin B12 ABC transporter, permease component BtuC
Clos_2328
cobN
Cobalt chelatase CobN subunit
Clos_2327
chlI
Cobalt chelatase ChiI subunit
Clos_2326
chlD
Cobalt chelatase ChiD subunit
Position: -356
Score: 106.1
Sequence: TAAATAGAATGACCA...
Locus tag: Clos_0622
Name: THA_169
Funciton: YidE/YbjL duplication
Locus tag: Clos_0623
Name: sucC
Funciton: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Locus tag: Clos_0624
Name: sucD
Funciton: Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Locus tag: Clos_0625
Name: null
Funciton: Phytochrome-like protein; Cph2
Clos_0622
THA_169
YidE/YbjL duplication
Clos_0623
sucC
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Clos_0624
sucD
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
Clos_0625
Phytochrome-like protein; Cph2
Position: -343
Score: 126
Sequence: AAATGAATACATTTT...
Locus tag: Clos_0318
Name: btuF
Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: Clos_0319
Name: btuC
Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: Clos_0320
Name: btuD
Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: Clos_0321
Name: null
Funciton: ABC transporter ATP-binding protein
Locus tag: Clos_0322
Name: null
Funciton: ABC transporter, permease protein
Locus tag: Clos_0323
Name: cbiK
Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) / Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Clos_0318
btuF
Vitamin B12 ABC transporter, B12-binding component BtuF
Clos_0319
btuC
Vitamin B12 ABC transporter, permease component BtuC
Clos_0320
btuD
Vitamin B12 ABC transporter, ATPase component BtuD
Clos_0321
ABC transporter ATP-binding protein
Clos_0322
ABC transporter, permease protein
Clos_0323
cbiK
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) / Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
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