Regulon of Cobalamin in Clostridium perfringens ATCC 13124

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Regulog:	Cobalamin - Clostridiaceae
Under regulation:
- Genes	24
- Operons	4

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -544 Score: 89.4 Sequence: AAATAAAATAAGAGC... Locus tag: CPF_1515 Name: cblT Funciton: Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole Locus tag: CPF_1514 Name: cblS Funciton: Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis
	CPF_1515	cblT	Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole
	CPF_1514	cblS	Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis
Position: -488 Score: 84.2 Sequence: TTGATTAACTAATAA... Locus tag: CPF_1296 Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF Locus tag: CPF_1297 Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC Locus tag: CPF_1298 Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD Locus tag: CPF_1299 Name: Fnod_1372 Funciton: conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71 Locus tag: CPF_1300 Name: cbiP Funciton: Cobyric acid synthase
	CPF_1296	btuF	Vitamin B12 ABC transporter, B12-binding component BtuF
	CPF_1297	btuC	Vitamin B12 ABC transporter, permease component BtuC
	CPF_1298	btuD	Vitamin B12 ABC transporter, ATPase component BtuD
	CPF_1299	Fnod_1372	conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71
	CPF_1300	cbiP	Cobyric acid synthase
Position: -486 Score: 93.5 Sequence: TTAAATATTTAGAAA... Locus tag: CPF_0185 Name: cbiM Funciton: Substrate-specific component CbiM of cobalt ECF transporter Locus tag: CPF_0186 Name: cbiN Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter Locus tag: CPF_0187 Name: cbiQ Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter Locus tag: CPF_0188 Name: cbiO Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter
	CPF_0185	cbiM	Substrate-specific component CbiM of cobalt ECF transporter
	CPF_0186	cbiN	Additional substrate-specific component CbiN of cobalt ECF transporter
	CPF_0187	cbiQ	Transmembrane component CbiQ of energizing module of cobalt ECF transporter
	CPF_0188	cbiO	ATPase component CbiO of energizing module of cobalt ECF transporter
Position: -302 Score: 115.4 Sequence: ATAATATTTTATATT... Locus tag: CPF_1436 Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) Locus tag: CPF_1435 Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Locus tag: CPF_1434 Name: cbiD Funciton: Cobalt-precorrin-6 synthase, anaerobic Locus tag: CPF_1433 Name: cbiE Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) Locus tag: CPF_1432 Name: cbiT Funciton: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) Locus tag: CPF_1431 Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Locus tag: CPF_1430 Name: cbiF Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) Locus tag: CPF_1429 Name: cbiG Funciton: Cobalamin biosynthesis protein CbiG Locus tag: CPF_1428 Name: cbiH Funciton: Cobalt-precorrin-3b C17-methyltransferase Locus tag: CPF_1427 Name: cbiJ Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54) Locus tag: CPF_1426 Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF Locus tag: CPF_1425 Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC Locus tag: CPF_1424 Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
	CPF_1436	cbiK	Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
	CPF_1435	cbiC	Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
	CPF_1434	cbiD	Cobalt-precorrin-6 synthase, anaerobic
	CPF_1433	cbiE	Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)
	CPF_1432	cbiT	Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
	CPF_1431	cbiL	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
	CPF_1430	cbiF	Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
	CPF_1429	cbiG	Cobalamin biosynthesis protein CbiG
	CPF_1428	cbiH	Cobalt-precorrin-3b C17-methyltransferase
	CPF_1427	cbiJ	Cobalt-precorrin-6x reductase (EC 1.3.1.54)
	CPF_1426	btuF	Vitamin B12 ABC transporter, B12-binding component BtuF
	CPF_1425	btuC	Vitamin B12 ABC transporter, permease component BtuC
	CPF_1424	btuD	Vitamin B12 ABC transporter, ATPase component BtuD

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Cobalamin in Clostridium perfringens ATCC 13124

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --