Regulon of Cobalamin in Clostridium perfringens ATCC 13124
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Clostridiaceae |
| Under regulation: | |
| - Genes | 24 |
| - Operons | 4 |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -544
Score: 89.4 Sequence: AAATAAAATAAGAGC...
Locus tag: CPF_1515
Name: cblT Funciton: Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole
Locus tag: CPF_1514
Name: cblS Funciton: Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis |
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cblT
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Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole
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cblS
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Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis
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Position: -488
Score: 84.2 Sequence: TTGATTAACTAATAA...
Locus tag: CPF_1296
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: CPF_1297
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: CPF_1298
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD
Locus tag: CPF_1299
Name: Fnod_1372 Funciton: conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71
Locus tag: CPF_1300
Name: cbiP Funciton: Cobyric acid synthase |
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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Fnod_1372
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conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71
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cbiP
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Cobyric acid synthase
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Position: -486
Score: 93.5 Sequence: TTAAATATTTAGAAA...
Locus tag: CPF_0185
Name: cbiM Funciton: Substrate-specific component CbiM of cobalt ECF transporter
Locus tag: CPF_0186
Name: cbiN Funciton: Additional substrate-specific component CbiN of cobalt ECF transporter
Locus tag: CPF_0187
Name: cbiQ Funciton: Transmembrane component CbiQ of energizing module of cobalt ECF transporter
Locus tag: CPF_0188
Name: cbiO Funciton: ATPase component CbiO of energizing module of cobalt ECF transporter |
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cbiM
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Substrate-specific component CbiM of cobalt ECF transporter
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cbiN
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Additional substrate-specific component CbiN of cobalt ECF transporter
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cbiQ
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Transmembrane component CbiQ of energizing module of cobalt ECF transporter
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cbiO
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ATPase component CbiO of energizing module of cobalt ECF transporter
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Position: -302
Score: 115.4 Sequence: ATAATATTTTATATT...
Locus tag: CPF_1436
Name: cbiK Funciton: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
Locus tag: CPF_1435
Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
Locus tag: CPF_1434
Name: cbiD Funciton: Cobalt-precorrin-6 synthase, anaerobic
Locus tag: CPF_1433
Name: cbiE Funciton: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)
Locus tag: CPF_1432
Name: cbiT Funciton: Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
Locus tag: CPF_1431
Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
Locus tag: CPF_1430
Name: cbiF Funciton: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
Locus tag: CPF_1429
Name: cbiG Funciton: Cobalamin biosynthesis protein CbiG
Locus tag: CPF_1428
Name: cbiH Funciton: Cobalt-precorrin-3b C17-methyltransferase
Locus tag: CPF_1427
Name: cbiJ Funciton: Cobalt-precorrin-6x reductase (EC 1.3.1.54)
Locus tag: CPF_1426
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: CPF_1425
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: CPF_1424
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD |
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cbiK
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Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
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cbiC
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Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
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cbiD
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Cobalt-precorrin-6 synthase, anaerobic
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cbiE
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Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-)
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cbiT
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Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
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cbiL
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Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
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cbiF
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Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
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cbiG
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Cobalamin biosynthesis protein CbiG
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cbiH
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Cobalt-precorrin-3b C17-methyltransferase
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cbiJ
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Cobalt-precorrin-6x reductase (EC 1.3.1.54)
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |