Regulog T-box(Tyr) - Clostridiaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Tyr-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - T-box
By effector - Tyr-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Clostridium kluyveri DSM 555
Clostridium sp. SS2/1
Clostridium cellulolyticum H10	2	2
Clostridium phytofermentans ISDg	1	1
Clostridium tetani E88
Clostridium acetobutylicum ATCC 824	1	1
Clostridium botulinum A str. ATCC 3502
Clostridium novyi NT	1	1
Clostridium perfringens ATCC 13124
Clostridium difficile 630	1	1
Clostridium beijerincki NCIMB 8052	1	1
Clostridium sp. OhILAs	1	1
Clostridium sp. L2-50
Clostridium scindens ATCC 35704	1	1
Clostridium nexile DSM 1787	1	1
Clostridium leptum DSM 753	1	1
Clostridium hiranonis DSM 13275	1	1
Clostridium butyricum 5521
Clostridium bolteae ATCC BAA-613	2	2
Clostridium bartlettii DSM 16795	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																					Function

CRON 1.
aroA	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	2 Clostridium cellulolyticum H10* Site: position = -351 score = 103.57 sequence = TAAATGTGATGAATG... Gene: Ccel_2071: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta Gene: Ccel_2880: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta	Clostridium phytofermentans ISDg Gene: null: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753 Gene: CLOLEP_01489: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_01959: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta	Clostridium bartlettii DSM 16795	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta

CRON 2.
tyrS	Clostridium kluyveri DSM 555 Gene: CKL_0758: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Clostridium sp. SS2/1 Gene: CLOSS21_02624: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Clostridium cellulolyticum H10 Site: position = -275 score = 88.6 sequence = TCAAACAGCTATGAT... Gene: Ccel_2081: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Clostridium phytofermentans ISDg Gene: null: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Clostridium tetani E88 Gene: CTC02446: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Clostridium acetobutylicum ATCC 824 Gene: CAC0637: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Clostridium botulinum A str. ATCC 3502 Gene: CBO3323: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Clostridium novyi NT Site: position = -279 score = 116.18 sequence = GAAAGATTTTGATGG... Gene: NT01CX_1364: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Clostridium perfringens ATCC 13124 Gene: CPF_0633: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4615: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Clostridium sp. OhILAs Site: position = -249 score = 113.98 sequence = GCTAAAAACTTTGAA... Gene: Clos_0921: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Clostridium sp. L2-50 Gene: CLOL250_02962: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Clostridium scindens ATCC 35704 Site: position = -386 score = 89.62 sequence = AAAAGGCTATGAAAA... Gene: CLOSCI_01439: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Clostridium nexile DSM 1787 Site: position = -352 score = 107.5 sequence = AAACGGCGAAGAAAA... Gene: CLONEX_01102: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Clostridium leptum DSM 753 Site: position = -296 score = 129.51 sequence = CATATCGGCTGTGAA... Gene: CLOLEP_03157: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_1558: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	2 Clostridium bolteae ATCC BAA-613* Site: position = -284 score = 117.78 sequence = AAAGAATGCCATGAA... Gene: CLOBOL_06297: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 Site: position = -448 score = 70.16 sequence = TGAATTGGCTATGAC... Gene: CLOBOL_03268: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Clostridium bartlettii DSM 16795 Site: position = -291 score = 122.99 sequence = AAAAAGCTAAGATAA... Gene: CLOBAR_01791: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1

CRON 3.
tyrZ	Clostridium kluyveri DSM 555 Gene: CKL_3527: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	* Clostridium phytofermentans ISDg Site: position = -425 score = 108.01 sequence = CATAGGCTATGATAA... Gene: null: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2	Clostridium tetani E88	* Clostridium acetobutylicum ATCC 824 Site: position = -324 score = 105.89 sequence = TAAATGCATTGAAGA... Gene: CAC0780: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2	Clostridium botulinum A str. ATCC 3502 Gene: CBO1204: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2	Clostridium novyi NT	Clostridium perfringens ATCC 13124	* Clostridium difficile 630 Site: position = -324 score = 115.29 sequence = TAAATGCTATGAAGA... Gene: CD1521: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2	* Clostridium beijerincki NCIMB 8052 Site: position = -353 score = 99.96 sequence = TAAAAGCAATGAAAA... Gene: Cbei_2416: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	* Clostridium hiranonis DSM 13275 Site: position = -206 score = 107.7 sequence = CAAAGGCTGAGAAGA... Gene: CLOHIR_01268: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2	Clostridium butyricum 5521 Gene: CBY_2699: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2	Clostridium bolteae ATCC BAA-613	* Clostridium bartlettii DSM 16795 Site: position = -78 score = 21.57 sequence = ATTAAGGTGGTAACG... Gene: CLOBAR_01591: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2	Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2