Regulog glmS - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | glmS |
| RFAM: | RF00234 |
| Regulation mode: | |
| Biological process: | Amino sugar metabolism |
| Effector: | Glucosamine-6-phosphate |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - glmS
- By effector - Glucosamine-6-phosphate
- By pathway - Amino sugar metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 1 | 1 |
| Clostridium sp. SS2/1 | 1 | 1 |
| Clostridium cellulolyticum H10 | 1 | 1 |
| Clostridium phytofermentans ISDg | 1 | 1 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 1 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
| Clostridium novyi NT | 1 | 1 |
| Clostridium perfringens ATCC 13124 | 1 | 1 |
| Clostridium difficile 630 | 1 | 1 |
| Clostridium beijerincki NCIMB 8052 | 1 | 1 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium sp. L2-50 | 1 | 1 |
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | ||
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | 1 | 1 |
| Clostridium butyricum 5521 | 1 | 1 |
| Clostridium bolteae ATCC BAA-613 | 1 | 1 |
| Clostridium bartlettii DSM 16795 | 1 | 1 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| glmS |
*
Clostridium kluyveri DSM 555 Site: position = -372 score = 105.41 sequence = AAGCATAAAAAGCGC... Gene: CKL_0317: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium sp. SS2/1 Site: position = -291 score = 80.25 sequence = ACAGAATTTAAGCGC... Gene: CLOSS21_00892: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium cellulolyticum H10 Site: position = -432 score = 82.77 sequence = GAATTAAAAAGGCGC... Gene: Ccel_1205: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium phytofermentans ISDg Site: position = -209 score = 67.01 sequence = AGATAAAATTAGCGC... Gene: null: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium tetani E88 Site: position = -296 score = 95.68 sequence = AAAATATAATAAAGC... Gene: CTC02543: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium acetobutylicum ATCC 824 Site: position = -249 score = 123.8 sequence = TTATAGTTAAAGCGC... Gene: CAC0158: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -224 score = 58.53 sequence = GAAACTCAGATTAGC... Gene: CBO3410: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium novyi NT Site: position = -221 score = 81.5 sequence = TTTGAGTAAGTTCGC... Gene: NT01CX_1166: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium perfringens ATCC 13124 Site: position = -302 score = 97.87 sequence = ATAATAGATTAAAGC... Gene: CPF_2636: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium difficile 630 Site: position = -232 score = 97.41 sequence = CACCTTTCTAAGCGC... Gene: CD0120: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium beijerincki NCIMB 8052 Site: position = -277 score = 85.48 sequence = GTAAATTCAACTATC... Gene: Cbei_0246: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium sp. OhILAs Site: position = -319 score = 107.29 sequence = AATTTAATGAAAAGC... Gene: Clos_2836: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium sp. L2-50 Site: position = -311 score = 44.6 sequence = TTTAGAAATCTTAGC... Gene: CLOL250_01278: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
|
|
|
*
Clostridium hiranonis DSM 13275 Site: position = -218 score = 97.32 sequence = TTCTGTTTTTAGCGC... Gene: CLOHIR_00014: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium butyricum 5521 Site: position = -431 score = 96.86 sequence = AAATTTTTAAAGCGC... Gene: CBY_2954: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -328 score = 53.26 sequence = ATAGCAAAGCTAAGC... Gene: CLOBOL_03730: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
*
Clostridium bartlettii DSM 16795 Site: position = -205 score = 90.93 sequence = TAGTGTTTATAAAGC... Gene: CLOBAR_00755: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |