Regulog ykkC-yxkD - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | ykkC-yxkD |
| RFAM: | RF00442 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - ykkC-yxkD
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 1 | 1 |
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | 1 | 1 |
| Clostridium phytofermentans ISDg | ||
| Clostridium tetani E88 | ||
| Clostridium acetobutylicum ATCC 824 | ||
| Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
| Clostridium novyi NT | ||
| Clostridium perfringens ATCC 13124 | 2 | 1 |
| Clostridium difficile 630 | 2 | 2 |
| Clostridium beijerincki NCIMB 8052 | 3 | 1 |
| Clostridium sp. OhILAs | 3 | 2 |
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | ||
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | ||
| Clostridium butyricum 5521 | 2 | 1 |
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium bartlettii DSM 16795 | 1 | 1 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| CBO2829 |
|
|
|
|
|
|
*
Clostridium botulinum A str. ATCC 3502 Site: position = -185 score = 43.58 sequence = GGGACTAGATAGCTA... Gene: CBO2829: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
|
|
|
hypothetical protein |
| CRON 2. | |||||||||||||||||||||
| gntR |
|
|
|
|
|
|
|
|
|
|
Gene: Cbei_4468: Transcriptional regulator, GntR family |
|
|
|
|
|
|
Gene: CBY_2071: Transcriptional regulator, GntR family |
|
*
Clostridium bartlettii DSM 16795 Site: position = -349 score = 71.28 sequence = TTTTATGGTTTTCTA... Gene: CLOBAR_00647: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| CRON 3. | |||||||||||||||||||||
| pbuO |
Gene: CKL_2693: xanthine/uracil permease family protein |
|
Gene: Ccel_0209: xanthine/uracil permease family protein |
Gene: null: xanthine/uracil permease family protein |
Gene: CTC01973: xanthine/uracil permease family protein |
|
Gene: CBO2901: xanthine/uracil permease family protein |
Gene: NT01CX_2417: xanthine/uracil permease family protein |
|
|
Gene: Cbei_1974: xanthine/uracil permease family protein |
*
Clostridium sp. OhILAs Site: position = -188 score = 69.18 sequence = GAAAGTGTACCTAGG... Gene: Clos_0535: xanthine/uracil permease family protein |
Gene: CLOL250_02773: xanthine/uracil permease family protein |
|
|
Gene: CLOLEP_03737: xanthine/uracil permease family protein |
|
|
Gene: CLOBOL_01359: xanthine/uracil permease family protein |
|
xanthine/uracil permease family protein |
| CRON 4. | |||||||||||||||||||||
| COG3382 |
|
|
|
|
|
Gene: CAP0113: Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta |
|
|
*
Clostridium perfringens ATCC 13124 Site: position = -150 score = 87.48 sequence = ATATAAAGTTTTCTA... Gene: CPF_1040: Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta |
*
Clostridium difficile 630 Site: position = -159 score = 81.89 sequence = TAATTTAGTTTTCTA... Gene: CD2392: Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta |
*
Clostridium beijerincki NCIMB 8052 Site: position = -155 score = 82.03 sequence = TATTTAAGTTTTCTA... Gene: Cbei_3447: Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta |
*
Clostridium sp. OhILAs Site: position = -157 score = 77.33 sequence = TTTAAGTTTTCTAGG... Gene: Clos_1298: Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta |
|
|
|
|
|
|
|
|
Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta |
| COG731 |
|
|
|
|
|
|
|
|
Gene: CPF_1039: Putative Fe-S oxidoreductase |
|
Gene: Cbei_3446: Putative Fe-S oxidoreductase |
Gene: Clos_1299: Putative Fe-S oxidoreductase |
|
|
|
|
|
*
Clostridium butyricum 5521 Site: position = -165 score = 81.14 sequence = AAGATAAGTTTTCTA... Gene: CBY_1736: Putative Fe-S oxidoreductase |
|
|
Putative Fe-S oxidoreductase |
| ykkD |
*
Clostridium kluyveri DSM 555 Site: position = -161 score = 79.4 sequence = ATTTAAAGTTTTATA... Gene: CKL_2463: Quaternary ammonium compound-resistance protein sugE |
|
*
Clostridium cellulolyticum H10 Site: position = -161 score = 81.47 sequence = ATATAGTTTTATAGG... Gene: Ccel_2446: Quaternary ammonium compound-resistance protein sugE |
|
|
|
|
|
|
*
Clostridium difficile 630 Site: position = -175 score = 84.61 sequence = ATAGAGTTTTATAGG... Gene: CD0488: Quaternary ammonium compound-resistance protein sugE |
Gene: Cbei_3445: Quaternary ammonium compound-resistance protein sugE |
|
|
|
|
|
|
Gene: CBY_1735: Quaternary ammonium compound-resistance protein sugE |
|
|
Quaternary ammonium compound-resistance protein sugE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |