Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Clostridium butyricum 5521

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AgaR N-acetylgalactosamine utilization 8 5
TF ArgR Arginine Arginine biosynthesis 5 6
TF BirA Biotin Biotin biosynthesis 4 3
TF CBY_0654 2 2
TF CcpA HPr, phosphocarrier protein Carbohydrate metabolism 86 73
TF CymR Cysteine metabolism 3 2
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 1 1
TF ExuR Galacturonate Galacturonate utilization 5 5
TF HcpR Nitric oxide Nitrosative stress response 2 1
TF HrcA Heat shock Heat shock response 3 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 1
TF LexA DNA damage SOS response 4 4
TF MalR1 Maltose Maltose utilization; Maltodextrin utilization 1 1
TF MalR2 Maltose Maltose utilization; Maltodextrin utilization 4 3
TF NiaR Niacin NAD biosynthesis 3 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 21 14
TF SdaR D-glycerate Glycerate utilization 2 1
TF XylR Xylose Xylose utilization 3 4
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YtrA Multidrug resistance; Multidrug efflux; Antibiotic resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 9 5
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 10 2
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 7 2
RNA Glycine Glycine Glycine metabolism 4 2
RNA L19_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 4 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 2 1
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 1
RNA Purine Adenine; Guanine Purine metabolism 4 3
RNA PyrR PyrR Pyrimidine metabolism 6 4
RNA SAM S-adenosylmethionine Methionine biosynthesis 9 4
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 2 2
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 6 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 5 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 7 2
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 2 2
RNA T-box(Met) Met-tRNA Amino acid metabolism 2 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 2 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 2 2
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 6 3
RNA T-box(Val) Val-tRNA Amino acid metabolism 3 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 5 3
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ykkC-yxkD Multidrug resistance 2 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 3 1
RNA yybP-ykoY 4 2
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