Regulon of CcpA in Clostridium butyricum 5521
| Regulator type: | Transcription factor |
| TF locus tag: | CBY_2264 |
| Regulator family: | LacI |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbohydrate metabolism |
| Effector: | HPr, phosphocarrier protein |
| Regulog: | CcpA - Clostridia-1 |
| Statistics of regulated genes: | |
| - Genes | 129 |
| - Operons | 54 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - CcpA
- By taxonomy - Clostridia-1
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By pathway - Carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -92
Score: 4.1 Sequence: CTTTAAAAGTTTAAAT
Locus tag: CBY_1585
Name: aroF Funciton: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
Locus tag: CBY_1586
Name: aroB Funciton: 3-dehydroquinate synthase (EC 4.2.3.4)
Locus tag: CBY_1587
Name: aroA Funciton: 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Locus tag: CBY_1588
Name: aroC Funciton: Chorismate synthase (EC 4.2.3.5)
Locus tag: CBY_1589
Name: pheA Funciton: Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) # AroHI/PheAIp/ACT domain
Locus tag: CBY_1590
Name: aroE Funciton: Chorismate mutase I (EC 5.4.99.5) / Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)
Locus tag: CBY_1591
Name: aroK Funciton: Shikimate kinase I (EC 2.7.1.71) |
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aroF
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2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
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aroB
|
3-dehydroquinate synthase (EC 4.2.3.4)
|
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aroA
|
5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
|
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aroC
|
Chorismate synthase (EC 4.2.3.5)
|
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pheA
|
Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) # AroHI/PheAIp/ACT domain
|
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aroE
|
Chorismate mutase I (EC 5.4.99.5) / Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)
|
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aroK
|
Shikimate kinase I (EC 2.7.1.71)
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Position: -43
Score: 4.7 Sequence: ATGTAAACGATTTTAA
Locus tag: CBY_1710
Name: mglB Funciton: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Locus tag: CBY_1711
Name: mglA Funciton: Galactose/methyl galactoside ABC transport system, ATP-binding protein (TC 3.A.1.2.3)
Locus tag: CBY_1712
Name: mglC Funciton: Galactose/methyl galactoside ABC transport system, permease protein (TC 3.A.1.2.3) |
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mglB
|
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
|
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mglA
|
Galactose/methyl galactoside ABC transport system, ATP-binding protein (TC 3.A.1.2.3)
|
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mglC
|
Galactose/methyl galactoside ABC transport system, permease protein (TC 3.A.1.2.3)
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Position: -228
Score: 4.4 Sequence: AATAAAAAGATTAAAA
Locus tag: CBY_0874
Name: null Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Locus tag: CBY_0875
Name: null Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) |
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PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
|
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PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
|
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Position: -104
Score: 4.7 Sequence: ATGAAAATGATTACTT
Locus tag: CBY_0862
Name: CBY_0862 Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
Locus tag: CBY_0863
Name: null Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Locus tag: CBY_0864
Name: null Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: CBY_0865
Name: null Funciton: Putative sugar kinase
Locus tag: CBY_0866
Name: bglA Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86) |
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CBY_0862
|
PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
|
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PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
|
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PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
|
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Putative sugar kinase
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bglA
|
6-phospho-beta-glucosidase (EC 3.2.1.86)
|
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Position: -162
Score: 4.1 Sequence: AAGAAAAAAATAACTT
Position: -66
Score: 4.6 Sequence: TTGAAAATATTTTCAA
Locus tag: CBY_0842
Name: nanE Funciton: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Locus tag: CBY_0841
Name: nanA Funciton: N-acetylneuraminate lyase (EC 4.1.3.3)
Locus tag: CBY_0840
Name: null Funciton: Predicted sialic acid transporter
Locus tag: CBY_0839
Name: null Funciton: Conserved hypothetical protein
Locus tag: CBY_0838
Name: nanK Funciton: N-acetylmannosamine kinase (EC 2.7.1.60)
Locus tag: CBY_0837
Name: siaR Funciton: Transcription regulator of sialic acid utilization, RpiR family |
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nanE
|
N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
|
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nanA
|
N-acetylneuraminate lyase (EC 4.1.3.3)
|
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Predicted sialic acid transporter
|
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Conserved hypothetical protein
|
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nanK
|
N-acetylmannosamine kinase (EC 2.7.1.60)
|
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siaR
|
Transcription regulator of sialic acid utilization, RpiR family
|
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Position: -114
Score: 4.2 Sequence: ATATAAAATTTTTAAA
Position: -48
Score: 4 Sequence: AATAAAAAATTATTAT
Locus tag: CBY_2409
Name: xylS Funciton: Alpha-xylosidase (EC 3.2.1.177) |
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xylS
|
Alpha-xylosidase (EC 3.2.1.177)
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Position: -42
Score: 4.3 Sequence: ATAAAAATAATTAAAT
Locus tag: CBY_1093
Name: bglP Funciton: PTS system, beta-glucoside-specific IIBCA component (EC 2.7.1.69) |
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bglP
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PTS system, beta-glucoside-specific IIBCA component (EC 2.7.1.69)
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Position: -170
Score: 4.2 Sequence: ATGTAAAAAATAATAT
Position: -147
Score: 4.1 Sequence: TTGACAACGTTTTCTA
Locus tag: CBY_4099
Name: licT Funciton: Beta-glucoside bgl operon antiterminator, BglG family
Locus tag: CBY_4098
Name: bglP Funciton: PTS system, beta-glucoside-specific IIBCA component (EC 2.7.1.69)
Locus tag: CBY_4097
Name: bglH2 Funciton: Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86) |
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licT
|
Beta-glucoside bgl operon antiterminator, BglG family
|
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bglP
|
PTS system, beta-glucoside-specific IIBCA component (EC 2.7.1.69)
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bglH2
|
Aryl-phospho-beta-D-glucosidase (EC 3.2.1.86)
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Position: -104
Score: 4.5 Sequence: AAGAAAACATTTACAA
Locus tag: CBY_2074
Name: null Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Locus tag: CBY_2073
Name: null Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) |
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PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
|
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PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
|
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Position: -116
Score: 4.6 Sequence: AAGAAAATGATTTTAT
Locus tag: CBY_0566
Name: sspA Funciton: Small acid-soluble spore protein beta
Locus tag: CBY_0565
Name: null Funciton: Methyltransferase (EC 2.1.1.-)
Locus tag: CBY_0564
Name: hslO Funciton: Chaperonin |
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sspA
|
Small acid-soluble spore protein beta
|
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Methyltransferase (EC 2.1.1.-)
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hslO
|
Chaperonin
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Position: -61
Score: 4.5 Sequence: TTGTAAACGATATTAT
Locus tag: CBY_0508
Name: gldA Funciton: Glycerol dehydrogenase (EC 1.1.1.6)
Locus tag: CBY_0507
Name: dhaK Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
Locus tag: CBY_0506
Name: dhaM Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
Locus tag: CBY_0505
Name: dhaL Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component |
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gldA
|
Glycerol dehydrogenase (EC 1.1.1.6)
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dhaK
|
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
|
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dhaM
|
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
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dhaL
|
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component
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Position: -215
Score: 4.8 Sequence: ATGTAAATGTTTTAAA
Locus tag: CBY_0041
Name: niaX Funciton: Substrate-specific component NiaX of predicted niacin ECF transporter |
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niaX
|
Substrate-specific component NiaX of predicted niacin ECF transporter
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Position: -66
Score: 4.1 Sequence: TTGATAAAAATATAAT
Locus tag: CBY_1562
Name: fucO Funciton: Lactaldehyde reductase (EC 1.1.1.77) |
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fucO
|
Lactaldehyde reductase (EC 1.1.1.77)
|
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Position: -96
Score: 4.2 Sequence: ATGAAATAGTTATATA
Locus tag: CBY_3691
Name: dhaK Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
Locus tag: CBY_3690
Name: dhaM Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
Locus tag: CBY_3689
Name: dhaL Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component |
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dhaK
|
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
|
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dhaM
|
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
|
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dhaL
|
Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component
|
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Position: -90
Score: 4.3 Sequence: ATGTAAATGTTTACCT
Locus tag: CBY_3009
Name: ispF Funciton: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12) |
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ispF
|
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)
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Position: -58
Score: 4.6 Sequence: TTGAAAACAATTTCAA
Locus tag: CBY_1729
Name: agaN Funciton: Alpha-galactosidase (EC 3.2.1.22) |
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agaN
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Alpha-galactosidase (EC 3.2.1.22)
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Position: -164
Score: 4.8 Sequence: ATGAAAACGATTATAA
Position: -32
Score: 4.1 Sequence: TTGTTAACGTTAACTA
Locus tag: CBY_2353
Name: pelX Funciton: Pectate lyase (EC 4.2.2.9) |
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pelX
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Pectate lyase (EC 4.2.2.9)
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Position: -77
Score: 4 Sequence: ATGTAAATGAATTTTA
Locus tag: CBY_1661
Name: manA Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
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manA
|
Mannose-6-phosphate isomerase (EC 5.3.1.8)
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Position: -77
Score: 4.1 Sequence: TTGAAATAAATTTATA
Locus tag: CBY_2354
Name: null Funciton: Uncharacterized ABC transporter, ATP-binding protein
Locus tag: CBY_2355
Name: null Funciton: Uncharacterized ABC transporter, ATP-binding and permease protein |
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Uncharacterized ABC transporter, ATP-binding protein
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Uncharacterized ABC transporter, ATP-binding and permease protein
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Position: -73
Score: 4.7 Sequence: AAGAAAACGTTTAAAA
Locus tag: CBY_1564
Name: fucI Funciton: L-fucose isomerase
Locus tag: CBY_1565
Name: null Funciton: rhamnulokinase
Locus tag: CBY_1566
Name: fucU Funciton: L-fucose mutarotase (EC 5.1.3.n2)
Locus tag: CBY_1567
Name: fucA Funciton: L-fuculose phosphate aldolase (EC 4.1.2.17)
Locus tag: CBY_1568
Name: fucP Funciton: L-fucose:H+ symporter permease |
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fucI
|
L-fucose isomerase
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rhamnulokinase
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fucU
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L-fucose mutarotase (EC 5.1.3.n2)
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fucA
|
L-fuculose phosphate aldolase (EC 4.1.2.17)
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fucP
|
L-fucose:H+ symporter permease
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Position: -157
Score: 4.6 Sequence: AAGAAAACGTTTAATA
Locus tag: CBY_2072
Name: null Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
Locus tag: CBY_2071
Name: Cbei_4468 Funciton: Transcriptional regulator, GntR family
Locus tag: CBY_2069
Name: bglC Funciton: Beta-glucosidase (EC 3.2.1.21) |
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PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
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Cbei_4468
|
Transcriptional regulator, GntR family
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bglC
|
Beta-glucosidase (EC 3.2.1.21)
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Position: -98
Score: 4 Sequence: TTTAAAATGTAAAAAT
Locus tag: CBY_0511
Name: null Funciton: Transcriptional regulator, MarR family
Locus tag: CBY_0510
Name: null Funciton: Predicted transporter protein |
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Transcriptional regulator, MarR family
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Predicted transporter protein
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Position: -232
Score: 4.1 Sequence: TTTTAAATATTTATTT
Position: -64
Score: 4.1 Sequence: ATGAAAACAAATATTT
Locus tag: CBY_3649
Name: null Funciton: Predicted N-acetylglucosaminyltransferase (EC 2.4.1.-) |
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Predicted N-acetylglucosaminyltransferase (EC 2.4.1.-)
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Position: -34
Score: 4.5 Sequence: ATGAAATCGATTTAAA
Locus tag: CBY_0850
Name: bglC Funciton: Aryl-phospho-beta-D-glucosidase (EC3.2.1.86) |
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bglC
|
Aryl-phospho-beta-D-glucosidase (EC3.2.1.86)
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Position: -118
Score: 4.1 Sequence: TTAAAAAGGTTTTCAA
Position: -32
Score: 4.5 Sequence: ATGAAAACTATTACAA
Locus tag: CBY_4133
Name: galM Funciton: Aldose 1-epimerase (EC 5.1.3.3)
Locus tag: CBY_4134
Name: cbgA Funciton: Beta-galactosidase (EC 3.2.1.23) |
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galM
|
Aldose 1-epimerase (EC 5.1.3.3)
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cbgA
|
Beta-galactosidase (EC 3.2.1.23)
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Position: -241
Score: 4.2 Sequence: TTATAAATATTTTAAA
Position: -95
Score: 4.2 Sequence: ATAAAAAAATTAAAAT
Locus tag: CBY_0558
Name: ytxC Funciton: Putative sporulation protein YtxC |
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ytxC
|
Putative sporulation protein YtxC
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Position: -153
Score: 4.6 Sequence: ATGTAAACAATTAAAT
Locus tag: CBY_0846
Name: bglA Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86) |
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bglA
|
6-phospho-beta-glucosidase (EC 3.2.1.86)
|
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Position: -93
Score: 4.6 Sequence: ATGAAAAAGTTAAATA
Locus tag: CBY_2799
Name: null Funciton: Putative peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-) |
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Putative peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-)
|
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Position: -153
Score: 4.6 Sequence: ATGAAAAAAATTAAAA
Locus tag: CBY_2696
Name: null Funciton: Hypothetical membrane protein |
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Hypothetical membrane protein
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Position: 55
Score: 4.3 Sequence: CTGAAAATGTTTTCTT
Locus tag: CBY_1726
Name: galK Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: CBY_1725
Name: galE Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: CBY_1724
Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: CBY_1723
Name: galR Funciton: Transcription regulator of galactose utilization, LacI family |
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galK
|
Galactokinase (EC 2.7.1.6)
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galE
|
UDP-glucose 4-epimerase (EC 5.1.3.2)
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galT
|
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
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galR
|
Transcription regulator of galactose utilization, LacI family
|
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Position: -222
Score: 4.6 Sequence: AAGAAAATGTTTACAA
Locus tag: CBY_3247
Name: ltaE Funciton: Low-specificity L-threonine aldolase (EC 4.1.2.5) |
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ltaE
|
Low-specificity L-threonine aldolase (EC 4.1.2.5)
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Position: -77
Score: 4.5 Sequence: ATGATAATGTTTATAT
Locus tag: CBY_1741
Name: null Funciton: PTS system, cellobiose-specific IIB component |
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PTS system, cellobiose-specific IIB component
|
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Position: -122
Score: 4.1 Sequence: TTTTAAATAATTAAAA
Locus tag: CBY_4067
Name: cggR Funciton: Central glycolytic genes regulator
Locus tag: CBY_4068
Name: gapC Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: CBY_4069
Name: pgk Funciton: Phosphoglycerate kinase (EC 2.7.2.3) |
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cggR
|
Central glycolytic genes regulator
|
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gapC
|
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
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pgk
|
Phosphoglycerate kinase (EC 2.7.2.3)
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Position: -220
Score: 4.6 Sequence: AAGTAAAAGTTTTCAT
Position: -195
Score: 4.6 Sequence: TTGAAAATATTTTTAT
Position: -84
Score: 4.2 Sequence: ATGATAATAATTTATA
Locus tag: CBY_1888
Name: cheY Funciton: Chemotaxis protein cheY
Locus tag: CBY_1887
Name: cheX Funciton: Chemotaxis protein CheX |
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cheY
|
Chemotaxis protein cheY
|
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cheX
|
Chemotaxis protein CheX
|
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Position: -101
Score: 4.6 Sequence: TTGTAAACGTTTATTT
Locus tag: CBY_1978
Name: pflD Funciton: pyruvate formate-lyase
Locus tag: CBY_1977
Name: pflC Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
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pflD
|
pyruvate formate-lyase
|
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pflC
|
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
|
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Position: -226
Score: 4.6 Sequence: TTGTAAAAGTTTACTT
Locus tag: CBY_2940
Name: malH Funciton: Maltose/maltodextrin ABC transporter, periplasmic component
Locus tag: CBY_2941
Name: malF Funciton: Maltose/maltodextrin ABC transporter, permease protein MalF
Locus tag: CBY_2942
Name: malG Funciton: Maltose/maltodextrin ABC transporter, permease protein MalG
Locus tag: CBY_2943
Name: malQ Funciton: 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) |
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malH
|
Maltose/maltodextrin ABC transporter, periplasmic component
|
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malF
|
Maltose/maltodextrin ABC transporter, permease protein MalF
|
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malG
|
Maltose/maltodextrin ABC transporter, permease protein MalG
|
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malQ
|
4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25)
|
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Position: -250
Score: 4.3 Sequence: ATGTAAATGTTTTAAG
Locus tag: CBY_3688
Name: kdpA Funciton: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: CBY_3687
Name: kdpB Funciton: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: CBY_3686
Name: kdpC Funciton: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: CBY_3685
Name: null Funciton: hypothetical protein
Locus tag: CBY_3684
Name: kdpD Funciton: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)
Locus tag: CBY_3683
Name: kdpE Funciton: Transcription regulator of potassium transport, OmpR family |
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kdpA
|
Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)
|
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kdpB
|
Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)
|
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kdpC
|
Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)
|
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|
hypothetical protein
|
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|
kdpD
|
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)
|
||
|
kdpE
|
Transcription regulator of potassium transport, OmpR family
|
||
|
Position: -370
Score: 4.2 Sequence: ATGAAAATAAATTAAA
Locus tag: CBY_1459
Name: ptnA Funciton: PTS system, mannose-specific IIBA component (EC 2.7.1.69)
Locus tag: CBY_1460
Name: manY Funciton: PTS system, mannose-specific IIC component (EC 2.7.1.69)
Locus tag: CBY_1461
Name: ptnD Funciton: PTS system, mannose-specific IID component (EC 2.7.1.69) |
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|
ptnA
|
PTS system, mannose-specific IIBA component (EC 2.7.1.69)
|
||
|
manY
|
PTS system, mannose-specific IIC component (EC 2.7.1.69)
|
||
|
ptnD
|
PTS system, mannose-specific IID component (EC 2.7.1.69)
|
||
|
Position: -147
Score: 4.1 Sequence: TAATAAATGATTAAAT
Position: -99
Score: 4.7 Sequence: ATTAAAACGTTTAAAA
Locus tag: CBY_1554
Name: galU Funciton: UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) |
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|
galU
|
UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)
|
||
|
Position: -223
Score: 4.1 Sequence: TTGAAAAAATTTTAGT
Position: -130
Score: 4.1 Sequence: AAGAAATAAATTTAAT
Locus tag: CBY_3256
Name: glcA Funciton: L-lactate permease |
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|
glcA
|
L-lactate permease
|
||
|
Position: -80
Score: 4.6 Sequence: ATAAAAAAGTTTTAAA
Locus tag: CBY_0413
Name: lrgA Funciton: Antiholin-like protein LrgA
Locus tag: CBY_0412
Name: lrgB Funciton: LrgA-associated membrane protein LrgB
Locus tag: CBY_0411
Name: null Funciton: Hypothetical protein
Locus tag: CBY_0410
Name: null Funciton: Transcriptional regulator, GntR family |
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|
lrgA
|
Antiholin-like protein LrgA
|
||
|
lrgB
|
LrgA-associated membrane protein LrgB
|
||
|
Hypothetical protein
|
|||
|
Transcriptional regulator, GntR family
|
|||
|
Position: -186
Score: 4.4 Sequence: AATTAAATGTTTAAAT
Locus tag: CBY_3642
Name: nifJ2 Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
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|
nifJ2
|
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
|
||
|
Position: -228
Score: 4.1 Sequence: TTTATAAAAATTTAAT
Locus tag: CBY_1889
Name: nifJ2 Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
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|
nifJ2
|
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
|
||
|
Position: -166
Score: 4.3 Sequence: TTGTAAACAATAAAAA
Locus tag: CBY_0233
Name: nifJ2 Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
|||
|
nifJ2
|
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
|
||
|
Position: -77
Score: 4.2 Sequence: ATATTAACGTTTTTAT
Position: -73
Score: 3.9 Sequence: AAGTAAAAAAATTAAT
Locus tag: CBY_2984
Name: lacR Funciton: Lactose phosphotransferase system repressor lacR
Locus tag: CBY_2985
Name: CBY_2985 Funciton: PTS system, putative lactose-specific IIBC component (EC 2.7.1.69)
Locus tag: CBY_2986
Name: CBY_2986 Funciton: PTS system, putative lactose-specific IIB component (EC 2.7.1.69)
Locus tag: CBY_2987
Name: CBY_2987 Funciton: PTS system, putative lactose-specific IIC component (EC 2.7.1.69)
Locus tag: CBY_2988
Name: lacA Funciton: Galactose-6-phosphate isomerase, LacA subunit (EC 5.3.1.26)
Locus tag: CBY_2989
Name: lacB Funciton: Galactose-6-phosphate isomerase, LacB subunit (EC 5.3.1.26)
Locus tag: CBY_2990
Name: agaY Funciton: Tagatose-1,6-bisphosphate aldolase GatY (EC 4.1.2.-) |
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|
lacR
|
Lactose phosphotransferase system repressor lacR
|
||
|
CBY_2985
|
PTS system, putative lactose-specific IIBC component (EC 2.7.1.69)
|
||
|
CBY_2986
|
PTS system, putative lactose-specific IIB component (EC 2.7.1.69)
|
||
|
CBY_2987
|
PTS system, putative lactose-specific IIC component (EC 2.7.1.69)
|
||
|
lacA
|
Galactose-6-phosphate isomerase, LacA subunit (EC 5.3.1.26)
|
||
|
lacB
|
Galactose-6-phosphate isomerase, LacB subunit (EC 5.3.1.26)
|
||
|
agaY
|
Tagatose-1,6-bisphosphate aldolase GatY (EC 4.1.2.-)
|
||
|
Position: -150
Score: 4.2 Sequence: TTGAAAATATTAATTA
Position: -40
Score: 4.1 Sequence: ATTTAAATTATTATAT
Locus tag: CBY_0247
Name: uxaB Funciton: Altronate oxidoreductase (EC 1.1.1.58)
Locus tag: CBY_0246
Name: uxaA Funciton: Altronate hydrolase (EC 4.2.1.7)
Locus tag: CBY_0245
Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) |
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|
uxaB
|
Altronate oxidoreductase (EC 1.1.1.58)
|
||
|
uxaA
|
Altronate hydrolase (EC 4.2.1.7)
|
||
|
kduD
|
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
|
||
|
Position: -95
Score: 4 Sequence: AATAAAAATATATAAT
Locus tag: CBY_2431
Name: xylR Funciton: Transcription repressor of xylose utilization, ROK family |
|||
|
xylR
|
Transcription repressor of xylose utilization, ROK family
|
||
|
Position: -72
Score: 4.1 Sequence: TTTAAAAAGTATTTTT
Position: -42
Score: 4.2 Sequence: TATAAAACTTTTTAAA
Locus tag: CBY_2380
Name: null Funciton: Hypothetical protein
Locus tag: CBY_2379
Name: null Funciton: Predicted xylose isomerase |
|||
|
Hypothetical protein
|
|||
|
Predicted xylose isomerase
|
|||
|
Position: -66
Score: 4 Sequence: TATAAAAAGTTATTTA
Locus tag: CBY_3808
Name: ulaE Funciton: L-ribulose-5-phosphate 3-epimerase (EC 5.1.3.22)
Locus tag: CBY_3807
Name: tkt2 Funciton: Putative transketolase
Locus tag: CBY_3806
Name: tkt3 Funciton: Transketolase
Locus tag: CBY_3805
Name: tal Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: CBY_3804
Name: rpe Funciton: Ribulose-phosphate 3-epimerase (EC 5.1.3.1) |
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|
ulaE
|
L-ribulose-5-phosphate 3-epimerase (EC 5.1.3.22)
|
||
|
tkt2
|
Putative transketolase
|
||
|
tkt3
|
Transketolase
|
||
|
tal
|
Transaldolase (EC 2.2.1.2)
|
||
|
rpe
|
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)
|
||
|
Position: -77
Score: 3.9 Sequence: TTTAAAAAGAATTTTA
Position: -57
Score: 4.5 Sequence: TTAAAAATGTTTTTAT
Position: -34
Score: 4.6 Sequence: TTGTAAATGTTTAATA
Locus tag: CBY_2342
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: CBY_2343
Name: xylR Funciton: Transcription repressor of xylose utilization, ROK family
Locus tag: CBY_2344
Name: tal Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: CBY_2345
Name: tkt Funciton: Transketolase (EC 2.2.1.1) |
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|
xylB
|
Xylulose kinase (EC 2.7.1.17)
|
||
|
xylR
|
Transcription repressor of xylose utilization, ROK family
|
||
|
tal
|
Transaldolase (EC 2.2.1.2)
|
||
|
tkt
|
Transketolase (EC 2.2.1.1)
|
||
|
Position: -76
Score: 4.1 Sequence: ATGAATAAATTTACAA
Position: -59
Score: 3.9 Sequence: ATGATTAAGATTTTAA
Position: -42
Score: 3.9 Sequence: TGGAAAACATTTGAAT
Locus tag: CBY_2438
Name: tkt Funciton: Transketolase (EC 2.2.1.1) |
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|
tkt
|
Transketolase (EC 2.2.1.1)
|
||
|
Position: -115
Score: 4.4 Sequence: AAGAAAATATTTACAA
Position: -41
Score: 4.2 Sequence: TTGTTAACGATAACAA
Locus tag: CBY_3715
Name: pelL2 Funciton: Pectate lyase, secreted, polysaccharide lyase family |
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|
pelL2
|
Pectate lyase, secreted, polysaccharide lyase family
|
||
|
Position: -54
Score: 4.4 Sequence: ATGTAAATAATTACAA
Locus tag: CBY_0242
Name: null Funciton: Conserved hypothetical protein
Locus tag: CBY_0241
Name: null Funciton: Predicted polysaccharide deacetylase |
|||
|
Conserved hypothetical protein
|
|||
|
Predicted polysaccharide deacetylase
|
|||
|
Position: -52
Score: 3.9 Sequence: AAATAAATAATTTTAT
Locus tag: CBY_0240
Name: null Funciton: Permease of the Na:galactoside symporter family
Locus tag: CBY_0239
Name: CBY_0239 Funciton: Glycoside hydrolase |
|||
|
Permease of the Na:galactoside symporter family
|
|||
|
CBY_0239
|
Glycoside hydrolase
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |