Regulon of AgaR in Clostridium butyricum 5521

Properties
Regulator type:	Transcription factor
TF locus tag:	CBY_3028, CBY_3476
Regulator family:	GntR/Others
Regulation mode:
Biological process:	N-acetylgalactosamine utilization
Effector:
Regulog:	AgaR - Clostridia-1
Statistics of regulated genes:
- Genes	16
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By TF family - GntR/Others
By pathway - N-acetylgalactosamine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -19 Score: 4.7 Sequence: AAATTGGTTAATACCAAAAA Locus tag: CBY_3473 Name: CBY_3473 Funciton: PTS system, N-acetylgalactosamine- and galactosamine-specific IIB component (EC 2.7.1.69) Locus tag: CBY_3474 Name: CBY_3474 Funciton: PTS system, N-acetylgalactosamine- and galactosamine-specific IIC component (EC 2.7.1.69) Locus tag: CBY_3475 Name: CBY_3475 Funciton: PTS system, N-acetylgalactosamine- and galactosamine-specific IID component (EC 2.7.1.69) Locus tag: CBY_3476 Name: agaR Funciton: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family Locus tag: CBY_3477 Name: agaS Funciton: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) Locus tag: CBY_3478 Name: CBY_3478 Funciton: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) Locus tag: CBY_3479 Name: agaY Funciton: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40)
	CBY_3473	CBY_3473	PTS system, N-acetylgalactosamine- and galactosamine-specific IIB component (EC 2.7.1.69)
	CBY_3474	CBY_3474	PTS system, N-acetylgalactosamine- and galactosamine-specific IIC component (EC 2.7.1.69)
	CBY_3475	CBY_3475	PTS system, N-acetylgalactosamine- and galactosamine-specific IID component (EC 2.7.1.69)
	CBY_3476	agaR	Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family
	CBY_3477	agaS	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
	CBY_3478	CBY_3478	PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
	CBY_3479	agaY	Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40)
Position: -285 Score: 4.7 Sequence: TTTTTGGTATTAACCAATTT Locus tag: CBY_3472 Name: agaA Funciton: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
	CBY_3472	agaA	N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
Position: -201 Score: 5.8 Sequence: TATTTGGTAATTACCACTTA Locus tag: CBY_3028 Name: agaR Funciton: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family
	CBY_3028	agaR	Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family
Position: -267 Score: 5.8 Sequence: TAAGTGGTAATTACCAAATA Position: -51 Score: 6 Sequence: TAAGTGGTAATTACCAGTTG Locus tag: CBY_3029 Name: agaA2 Funciton: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) Locus tag: CBY_3030 Name: Cbei_4539 Funciton: Putative transcriptional regulator with PTS regulatory domain Locus tag: CBY_3031 Name: Cbei_4538 Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) Locus tag: CBY_3032 Name: Cbei_4537 Funciton: PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69) Locus tag: CBY_3033 Name: agaK Funciton: Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) Locus tag: CBY_3034 Name: PF05913 Funciton: Bacterial protein of unknown function (DUF871) Locus tag: CBY_3035 Name: Cbei_4535 Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
	CBY_3029	agaA2	N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
	CBY_3030	Cbei_4539	Putative transcriptional regulator with PTS regulatory domain
	CBY_3031	Cbei_4538	PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
	CBY_3032	Cbei_4537	PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
	CBY_3033	agaK	Predicted N-acetylgalactosamine kinase (EC 2.7.1.157)
	CBY_3034	PF05913	Bacterial protein of unknown function (DUF871)
	CBY_3035	Cbei_4535	PTS system, cellobiose-specific IIC component (EC 2.7.1.69)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of AgaR in Clostridium butyricum 5521

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --