Regulog AgaR - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | N-acetylgalactosamine utilization |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - GntR/Others
- By pathway - N-acetylgalactosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | ||
| Clostridium beijerincki NCIMB 8052 | 8 | 3 |
| Clostridium botulinum A str. ATCC 3502 | ||
| Clostridium butyricum 5521 | 16 | 4 |
| Clostridium kluyveri DSM 555 | ||
| Clostridium novyi NT | 12 | 5 |
| Clostridium perfringens ATCC 13124 | 3 | 2 |
| Clostridium tetani E88 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| agaA2 |
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*
Clostridium butyricum 5521 Site: position = -51 score = 5.95037 sequence = TAAGTGGTAATTACCAGTTG Site: position = -267 score = 5.76517 sequence = TAAGTGGTAATTACCAAATA Gene: CBY_3029: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| Cbei_4539 |
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Clostridium beijerincki NCIMB 8052 Site: position = -192 score = 4.81845 sequence = AAACTGGTAGTATCCAGTTA Gene: Cbei_4539: Putative transcriptional regulator with PTS regulatory domain |
Gene: CBO3358: Putative transcriptional regulator with PTS regulatory domain |
Gene: CBY_3030: Putative transcriptional regulator with PTS regulatory domain |
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Putative transcriptional regulator with PTS regulatory domain |
| Cbei_4538 |
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Gene: Cbei_4538: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) |
Gene: CBO3357: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) |
Gene: CBY_3031: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) |
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PTS system, cellobiose-specific IIB component (EC 2.7.1.69) |
| Cbei_4537 |
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Gene: Cbei_4537: PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
Gene: CBO3356: PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
Gene: CBY_3032: PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
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PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
| agaK |
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Gene: Cbei_4536: Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) |
Gene: CBO3355: Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) |
Gene: CBY_3033: Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) |
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Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) |
| PF05913 |
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Gene: CBO3354: Bacterial protein of unknown function (DUF871) |
Gene: CBY_3034: Bacterial protein of unknown function (DUF871) |
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Bacterial protein of unknown function (DUF871) |
| Cbei_4535 |
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Gene: Cbei_4535: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
Gene: CBO3359: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
Gene: CBY_3035: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
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PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
| CRON 2. | |||||||||
| NT01CX_0299 |
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*
Clostridium novyi NT Site: position = -235 score = 5.27539 sequence = GAACTGGTAATGACAACATT Site: position = -317 score = 5.78865 sequence = AATGTGGTAATAACAACATT Gene: NT01CX_0299: Predicted N-acetylgalactosamine permease |
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Predicted N-acetylgalactosamine permease |
| NT01CX_0298 |
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Gene: NT01CX_0298: conserved hypothetical protein |
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conserved hypothetical protein |
| NT01CX_0297 |
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Gene: NT01CX_0297: N-acetylgalactosamine 6-sulfate sulfatase |
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N-acetylgalactosamine 6-sulfate sulfatase |
| agaK2 |
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Gene: CBY_3471: Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) |
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Gene: NT01CX_0296: Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) |
*
Clostridium perfringens ATCC 13124 Site: position = -40 score = 5.78808 sequence = CAAGTGGTAATTACAACTAT Gene: CPF_2149: Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) |
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Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) |
| CRON 3. | |||||||||
| Cbei_1383 |
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Gene: Cbei_1383: Predicted N-acetylgalactosamine permease |
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Clostridium novyi NT Site: position = -76 score = 4.10729 sequence = CAACTTGTACGAACAAGTTG Gene: NT01CX_0301: Predicted N-acetylgalactosamine permease |
Gene: CPF_0087: Predicted N-acetylgalactosamine permease |
Gene: CTC00514: Predicted N-acetylgalactosamine permease |
Predicted N-acetylgalactosamine permease |
| NT01CX_0300 |
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Gene: NT01CX_0300: N-acetylglucosamine-6-sulfatase |
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N-acetylglucosamine-6-sulfatase |
| CRON 4. | |||||||||
| CBY_3473 |
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*
Clostridium butyricum 5521 Site: position = -19 score = 4.65378 sequence = AAATTGGTTAATACCAAAAA Gene: CBY_3473: PTS system, N-acetylgalactosamine- and galactosamine-specific IIB component (EC 2.7.1.69) |
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PTS system, N-acetylgalactosamine- and galactosamine-specific IIB component (EC 2.7.1.69) |
| CBY_3474 |
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Gene: CBY_3474: PTS system, N-acetylgalactosamine- and galactosamine-specific IIC component (EC 2.7.1.69) |
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PTS system, N-acetylgalactosamine- and galactosamine-specific IIC component (EC 2.7.1.69) |
| CBY_3475 |
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Gene: CBY_3475: PTS system, N-acetylgalactosamine- and galactosamine-specific IID component (EC 2.7.1.69) |
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PTS system, N-acetylgalactosamine- and galactosamine-specific IID component (EC 2.7.1.69) |
| agaR |
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*
Clostridium beijerincki NCIMB 8052 Site: position = -171 score = 5.94456 sequence = TTAGTGGTAATTACCACTTG Site: position = -269 score = 5.14402 sequence = TAAGTGGACATTATCAGTTT Gene: Cbei_4563: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family |
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*2
Clostridium butyricum 5521 Site: position = -201 score = 5.76517 sequence = TATTTGGTAATTACCACTTA Gene: CBY_3028: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family Gene: CBY_3476: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family |
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*2
Clostridium novyi NT Site: position = -41 score = 4.8302 sequence = TAAGTGGTATGTACAACATG Gene: NT01CX_0293: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family Site: position = -350 score = 4.10729 sequence = CAACTTGTTCGTACAAGTTG Gene: NT01CX_0302: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family |
Gene: CPF_2963: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family |
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Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family |
| agaS |
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Gene: Cbei_2904: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Gene: CBY_3477: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Clostridium novyi NT Site: position = -53 score = 5.07942 sequence = TAACTGGTAATGACAACACA Gene: NT01CX_0292: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Clostridium perfringens ATCC 13124 Site: position = -38 score = 5.46221 sequence = CAACTGGTAATGACAACATT Site: position = -83 score = 4.96257 sequence = TAACTTGTAATAACATCATT Gene: CPF_2961: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
| CBY_3478 |
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Gene: CBY_3478: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
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PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
| agaY |
Gene: CAC2952: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
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Gene: CBO1993: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
2
Clostridium butyricum 5521 Gene: CBY_3479: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) Gene: CBY_2990: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
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Gene: NT01CX_0290: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
Gene: CPF_2962: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
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Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
| agaA |
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*
Clostridium beijerincki NCIMB 8052 Site: position = -58 score = 5.14402 sequence = AAACTGATAATGTCCACTTA Site: position = -156 score = 5.94456 sequence = CAAGTGGTAATTACCACTAA Gene: Cbei_4564: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Clostridium butyricum 5521 Site: position = -285 score = 4.65378 sequence = TTTTTGGTATTAACCAATTT Gene: CBY_3472: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: NT01CX_0291: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: CPF_2434: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| agaZ |
Gene: CAC2951: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56) |
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Gene: CBO1992: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56) |
Gene: CBY_2991: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56) |
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Gene: NT01CX_0289: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56) |
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Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase (EC 2.7.1.56) |
| nagB |
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Gene: Cbei_4562: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Gene: CBY_0397: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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Gene: CPF_2744: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Gene: CTC02631: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |