Regulon of AgaR in Clostridium beijerincki NCIMB 8052

Properties
Regulator type:	Transcription factor
TF locus tag:	Cbei_4563
Regulator family:	GntR/Others
Regulation mode:
Biological process:	N-acetylgalactosamine utilization
Effector:
Regulog:	AgaR - Clostridia-1
Statistics of regulated genes:
- Genes	8
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By TF family - GntR/Others
By pathway - N-acetylgalactosamine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -156 Score: 5.9 Sequence: CAAGTGGTAATTACCACTAA Position: -58 Score: 5.1 Sequence: AAACTGATAATGTCCACTTA Locus tag: Cbei_4564 Name: agaA Funciton: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
	Cbei_4564	agaA	N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
Position: -269 Score: 5.1 Sequence: TAAGTGGACATTATCAGTTT Position: -171 Score: 5.9 Sequence: TTAGTGGTAATTACCACTTG Locus tag: Cbei_4563 Name: agaR Funciton: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family Locus tag: Cbei_4562 Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
	Cbei_4563	agaR	Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family
	Cbei_4562	nagB	Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Position: -192 Score: 4.8 Sequence: AAACTGGTAGTATCCAGTTA Locus tag: Cbei_4539 Name: Cbei_4539 Funciton: Putative transcriptional regulator with PTS regulatory domain Locus tag: Cbei_4538 Name: Cbei_4538 Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) Locus tag: Cbei_4537 Name: Cbei_4537 Funciton: PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69) Locus tag: Cbei_4536 Name: agaK Funciton: Predicted N-acetylgalactosamine kinase (EC 2.7.1.157) Locus tag: Cbei_4535 Name: Cbei_4535 Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
	Cbei_4539	Cbei_4539	Putative transcriptional regulator with PTS regulatory domain
	Cbei_4538	Cbei_4538	PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
	Cbei_4537	Cbei_4537	PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
	Cbei_4536	agaK	Predicted N-acetylgalactosamine kinase (EC 2.7.1.157)
	Cbei_4535	Cbei_4535	PTS system, cellobiose-specific IIC component (EC 2.7.1.69)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD