Regulon of AgaR in Clostridium beijerincki NCIMB 8052
| Regulator type: | Transcription factor |
| TF locus tag: | Cbei_4563 |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | N-acetylgalactosamine utilization |
| Effector: | |
| Regulog: | AgaR - Clostridia-1 |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - GntR/Others
- By pathway - N-acetylgalactosamine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -156
Score: 5.9 Sequence: CAAGTGGTAATTACCACTAA
Position: -58
Score: 5.1 Sequence: AAACTGATAATGTCCACTTA
Locus tag: Cbei_4564
Name: agaA Funciton: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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agaA
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N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
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Position: -269
Score: 5.1 Sequence: TAAGTGGACATTATCAGTTT
Position: -171
Score: 5.9 Sequence: TTAGTGGTAATTACCACTTG
Locus tag: Cbei_4563
Name: agaR Funciton: Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family
Locus tag: Cbei_4562
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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agaR
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Transcriptional regulator of N-Acetylgalactosamine utilization, GntR family
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nagB
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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Position: -192
Score: 4.8 Sequence: AAACTGGTAGTATCCAGTTA
Locus tag: Cbei_4539
Name: Cbei_4539 Funciton: Putative transcriptional regulator with PTS regulatory domain
Locus tag: Cbei_4538
Name: Cbei_4538 Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: Cbei_4537
Name: Cbei_4537 Funciton: PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
Locus tag: Cbei_4536
Name: agaK Funciton: Predicted N-acetylgalactosamine kinase (EC 2.7.1.157)
Locus tag: Cbei_4535
Name: Cbei_4535 Funciton: PTS system, cellobiose-specific IIC component (EC 2.7.1.69) |
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Cbei_4539
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Putative transcriptional regulator with PTS regulatory domain
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Cbei_4538
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PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
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Cbei_4537
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PTS system, lichenan-, cellobiose-specific IIA component (EC 2.7.1.69); PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
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agaK
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Predicted N-acetylgalactosamine kinase (EC 2.7.1.157)
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Cbei_4535
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PTS system, cellobiose-specific IIC component (EC 2.7.1.69)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |