Regulon of ExuR in Clostridium butyricum 5521
| Regulator type: | Transcription factor |
| TF locus tag: | CBY_3741 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Galacturonate utilization |
| Effector: | Galacturonate |
| Regulog: | ExuR - Clostridia-1 |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - LacI
- By effector - Galacturonate
- By pathway - Galacturonate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -197
Score: 4.5 Sequence: TTTGGAAAACGTGTTCAATT
Position: -96
Score: 5 Sequence: AAATGTGCACGTGTGCAAAA
Locus tag: CBY_0243
Name: rhiN Funciton: Rhamnogalacturonides degradation protein RhiN
Locus tag: CBY_0242
Name: PF02589 Funciton: Domain of unknown function DUF162
Locus tag: CBY_0241
Name: PF01522 Funciton: Polysaccharide deacetylase
Locus tag: CBY_0240
Name: rhiT Funciton: Putative rhamnogalacturonide transporter
Locus tag: CBY_0239
Name: pgl Funciton: Polygalacturonase (EC 3.2.1.15) |
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rhiN
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Rhamnogalacturonides degradation protein RhiN
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PF02589
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Domain of unknown function DUF162
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PF01522
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Polysaccharide deacetylase
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rhiT
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Putative rhamnogalacturonide transporter
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pgl
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Polygalacturonase (EC 3.2.1.15)
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Position: -43
Score: 6 Sequence: AATTGTTAACGATAACAATA
Locus tag: CBY_3715
Name: null Funciton: Pectate lyase, secreted, polysaccharide lyase family |
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Pectate lyase, secreted, polysaccharide lyase family
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Position: -122
Score: 5.3 Sequence: AATTGTTAACGTTAAACTTA
Position: -34
Score: 5.9 Sequence: AATTGTTAACGTTAACTATA
Locus tag: CBY_2353
Name: pelX Funciton: Exopolygalacturonate lyase |
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pelX
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Exopolygalacturonate lyase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |