Regulog TPP - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 11 | 5 |
| Clostridium sp. SS2/1 | 2 | 2 |
| Clostridium cellulolyticum H10 | 5 | 2 |
| Clostridium phytofermentans ISDg | 1 | 1 |
| Clostridium tetani E88 | 10 | 3 |
| Clostridium acetobutylicum ATCC 824 | 14 | 5 |
| Clostridium botulinum A str. ATCC 3502 | 9 | 4 |
| Clostridium novyi NT | 5 | 3 |
| Clostridium perfringens ATCC 13124 | 12 | 5 |
| Clostridium difficile 630 | 12 | 3 |
| Clostridium beijerincki NCIMB 8052 | 12 | 4 |
| Clostridium sp. OhILAs | 6 | 3 |
| Clostridium sp. L2-50 | 1 | 1 |
| Clostridium scindens ATCC 35704 | 7 | 3 |
| Clostridium nexile DSM 1787 | 11 | 4 |
| Clostridium leptum DSM 753 | 5 | 2 |
| Clostridium hiranonis DSM 13275 | 9 | 2 |
| Clostridium butyricum 5521 | 9 | 3 |
| Clostridium bolteae ATCC BAA-613 | 8 | 3 |
| Clostridium bartlettii DSM 16795 | 6 | 2 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| thiW |
|
Gene: CLOSS21_01030: Substrate-specific component ThiW of predicted thiazole ECF transporter |
|
|
*
Clostridium tetani E88 Site: position = -203 score = 70.66 sequence = AATAAAGTTTCAGGG... Gene: CTC01754: Substrate-specific component ThiW of predicted thiazole ECF transporter |
|
*
Clostridium botulinum A str. ATCC 3502 Site: position = -410 score = 54.67 sequence = AATTTTTCAAAAGGG... Gene: CBO2254: Substrate-specific component ThiW of predicted thiazole ECF transporter |
|
|
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -301 score = 68.15 sequence = ATTGAATAACTAGGG... Gene: Cbei_4491: Substrate-specific component ThiW of predicted thiazole ECF transporter |
Gene: Clos_0767: Substrate-specific component ThiW of predicted thiazole ECF transporter |
|
|
*
Clostridium nexile DSM 1787 Site: position = -166 score = 66.31 sequence = CAAAAACATAGGGGA... Gene: CLONEX_00816: Substrate-specific component ThiW of predicted thiazole ECF transporter |
|
|
*
Clostridium butyricum 5521 Site: position = -200 score = 67.64 sequence = TAGATAACTAGGGGA... Gene: CBY_1699: Substrate-specific component ThiW of predicted thiazole ECF transporter |
*
Clostridium bolteae ATCC BAA-613 Site: position = -118 score = 60.62 sequence = CTAAATGACAACAGG... Gene: CLOBOL_04495: Substrate-specific component ThiW of predicted thiazole ECF transporter |
|
Substrate-specific component ThiW of predicted thiazole ECF transporter |
| thiD |
*
Clostridium kluyveri DSM 555 Site: position = -169 score = 80.45 sequence = AATAGTTTTGTGGGG... Gene: CKL_2919: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Clostridium sp. SS2/1 Site: position = -271 score = 56.02 sequence = TAAAAACAGGGAGCT... Gene: CLOSS21_01710: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Clostridium cellulolyticum H10 Site: position = -409 score = 59.42 sequence = GTACTAGTTGCGGGG... Site: position = -216 score = 58.84 sequence = TAAAAATTTGTGGGG... Gene: Ccel_1992: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
|
Gene: CTC01753: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: CAC3095: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*2
Clostridium botulinum A str. ATCC 3502 Gene: CBO0771: Phosphomethylpyrimidine kinase (EC 2.7.4.7) Site: position = -409 score = 71.26 sequence = CCTTATGTTGTGGGG... Gene: CBO0451: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Clostridium novyi NT Site: position = -275 score = 77.16 sequence = TTAAGTTGCAGGGGT... Gene: NT01CX_0246: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Clostridium perfringens ATCC 13124 Site: position = -184 score = 74.0 sequence = AAAAAATAGCTAGGG... Gene: CPF_1545: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Clostridium difficile 630 Site: position = -191 score = 66.85 sequence = AAAATAGCTAGGGGA... Gene: CD1599: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Cbei_4490: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Clostridium sp. OhILAs Site: position = -426 score = 68.36 sequence = AATGGAACACTGGGA... Gene: Clos_2695: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: CLOL250_00263: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: CLOSCI_03985: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
2
Clostridium nexile DSM 1787 Gene: CLONEX_00819: Phosphomethylpyrimidine kinase (EC 2.7.4.7) Gene: CLONEX_00626: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
|
Gene: CLOHIR_00636: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: CBY_1700: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -253 score = 51.79 sequence = TTGTAAATAAACGGG... Gene: CLOBOL_02869: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Clostridium bartlettii DSM 16795 Site: position = -297 score = 64.4 sequence = ATTAAAGTGCTAGGG... Gene: CLOBAR_02041: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| thiM |
Gene: CKL_2918: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: CLOSS21_01933: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: Ccel_1990: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
|
Gene: CTC01752: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
*
Clostridium acetobutylicum ATCC 824 Site: position = -196 score = 53.4 sequence = TAATATTTTTCAGGG... Gene: CAC3096: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
2
Clostridium botulinum A str. ATCC 3502 Gene: CBO2253: Hydroxyethylthiazole kinase (EC 2.7.1.50) Gene: CBO0450: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: NT01CX_0247: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: CPF_1544: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: CD1600: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: Cbei_4488: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: Clos_2694: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: CLOL250_00266: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: CLOSCI_03982: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: CLONEX_00817: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
|
*
Clostridium hiranonis DSM 13275 Site: position = -175 score = 55.95 sequence = AAAATCAAGCAGGGG... Gene: CLOHIR_00634: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: CBY_1702: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: CLOBOL_04494: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_02040: Hydroxyethylthiazole kinase (EC 2.7.1.50) Gene: CLOBAR_00057: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| thiE |
2
Clostridium kluyveri DSM 555 Gene: CKL_1635: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CKL_2917: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium sp. SS2/1 Gene: CLOSS21_01932: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CLOSS21_00147: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Ccel_1989: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
2
Clostridium tetani E88 Gene: CTC01746: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CTC01751: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium acetobutylicum ATCC 824 Gene: CAC0495: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CAC2920: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: CBO0449: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium novyi NT Gene: NT01CX_0248: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: NT01CX_1504: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium perfringens ATCC 13124 Gene: CPF_1852: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CPF_1543: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium difficile 630 Gene: CD1706: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CD1601: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_0648: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: Cbei_4487: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Clos_2693: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium sp. L2-50 Gene: CLOL250_00265: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CLOL250_02990: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_03983: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CLOSCI_02954: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium nexile DSM 1787 Gene: CLONEX_00818: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CLONEX_00627: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
2
Clostridium hiranonis DSM 13275 Gene: CLOHIR_00430: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CLOHIR_00635: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Clostridium butyricum 5521 Gene: CBY_3722: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CBY_1703: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: CLOBOL_04493: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
3
Clostridium bartlettii DSM 16795 Gene: CLOBAR_02037: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CLOBAR_00058: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: CLOBAR_01602: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiF |
Gene: CKL_1638: Sulfur carrier protein adenylyltransferase ThiF |
|
|
|
Gene: CTC01750: Sulfur carrier protein adenylyltransferase ThiF |
Gene: CAC2923: Sulfur carrier protein adenylyltransferase ThiF |
|
Gene: NT01CX_1503: Sulfur carrier protein adenylyltransferase ThiF |
Gene: CPF_1855: Sulfur carrier protein adenylyltransferase ThiF |
Gene: CD1703: Sulfur carrier protein adenylyltransferase ThiF |
*
Clostridium beijerincki NCIMB 8052 Site: position = -294 score = 76.65 sequence = TAAAAGGCTAGGGGT... Gene: Cbei_0647: Sulfur carrier protein adenylyltransferase ThiF |
|
Gene: CLOL250_02987: Sulfur carrier protein adenylyltransferase ThiF |
Gene: CLOSCI_02951: Sulfur carrier protein adenylyltransferase ThiF |
|
|
Gene: CLOHIR_00427: Sulfur carrier protein adenylyltransferase ThiF |
Gene: CBY_3726: Sulfur carrier protein adenylyltransferase ThiF |
|
Gene: CLOBAR_01599: Sulfur carrier protein adenylyltransferase ThiF |
Sulfur carrier protein adenylyltransferase ThiF |
| thiG |
Gene: CKL_1637: Thiazole biosynthesis protein ThiG |
2
Clostridium sp. SS2/1 Gene: CLOSS21_02633: Thiazole biosynthesis protein ThiG Gene: CLOSS21_00758: Thiazole biosynthesis protein ThiG |
|
|
Gene: CTC01749: Thiazole biosynthesis protein ThiG |
Gene: CAC2922: Thiazole biosynthesis protein ThiG |
|
Gene: NT01CX_1437: Thiazole biosynthesis protein ThiG |
Gene: CPF_1854: Thiazole biosynthesis protein ThiG |
Gene: CD1704: Thiazole biosynthesis protein ThiG |
Gene: Cbei_1519: Thiazole biosynthesis protein ThiG |
|
Gene: CLOL250_02988: Thiazole biosynthesis protein ThiG |
Gene: CLOSCI_02952: Thiazole biosynthesis protein ThiG |
|
|
Gene: CLOHIR_00428: Thiazole biosynthesis protein ThiG |
Gene: CBY_3724: Thiazole biosynthesis protein ThiG |
|
Gene: CLOBAR_01600: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| thiH |
Gene: CKL_1636: Thiazole biosynthesis protein ThiH |
Gene: CLOSS21_00757: Thiazole biosynthesis protein ThiH |
|
|
Gene: CTC01748: Thiazole biosynthesis protein ThiH |
Gene: CAC2921: Thiazole biosynthesis protein ThiH |
|
Gene: NT01CX_1438: Thiazole biosynthesis protein ThiH |
Gene: CPF_1853: Thiazole biosynthesis protein ThiH |
Gene: CD1705: Thiazole biosynthesis protein ThiH |
Gene: Cbei_1520: Thiazole biosynthesis protein ThiH |
|
Gene: CLOL250_02989: Thiazole biosynthesis protein ThiH |
Gene: CLOSCI_02953: Thiazole biosynthesis protein ThiH |
|
|
Gene: CLOHIR_00429: Thiazole biosynthesis protein ThiH |
Gene: CBY_3723: Thiazole biosynthesis protein ThiH |
|
Gene: CLOBAR_01601: Thiazole biosynthesis protein ThiH |
Thiazole biosynthesis protein ThiH |
| thiC |
*
Clostridium kluyveri DSM 555 Site: position = -241 score = 55.89 sequence = ATATTATGTGCAGGG... Gene: CKL_1776: Thiamine biosynthesis protein ThiC |
*
Clostridium sp. SS2/1 Site: position = -246 score = 59.87 sequence = GTAACTGAAATGGGA... Gene: CLOSS21_02770: Thiamine biosynthesis protein ThiC |
Gene: Ccel_1991: Thiamine biosynthesis protein ThiC |
|
*
Clostridium tetani E88 Site: position = -204 score = 73.8 sequence = AATAAATTTAGGGGA... Gene: CTC00828: Thiamine biosynthesis protein ThiC |
*
Clostridium acetobutylicum ATCC 824 Site: position = -242 score = 55.94 sequence = ATATTTTAGCTAGGG... Gene: CAC3014: Thiamine biosynthesis protein ThiC |
Gene: CBO2911: Thiamine biosynthesis protein ThiC |
*
Clostridium novyi NT Site: position = -202 score = 62.89 sequence = ATCGTTTGCGGGGGA... Gene: NT01CX_0092: Thiamine biosynthesis protein ThiC |
*
Clostridium perfringens ATCC 13124 Site: position = -253 score = 78.81 sequence = GTAAGTGCTAGGGGT... Gene: CPF_0670: Thiamine biosynthesis protein ThiC |
*
Clostridium difficile 630 Site: position = -252 score = 70.78 sequence = ATTAGAGCTAGGGGC... Gene: CD1702: Thiamine biosynthesis protein ThiC |
Gene: Cbei_4489: Thiamine biosynthesis protein ThiC |
*
Clostridium sp. OhILAs Site: position = -258 score = 71.75 sequence = TAAGTTAGAAGGGGA... Gene: Clos_0766: Thiamine biosynthesis protein ThiC |
*
Clostridium sp. L2-50 Site: position = -199 score = 58.48 sequence = TTATATATTCAGGGA... Gene: CLOL250_01568: Thiamine biosynthesis protein ThiC |
*
Clostridium scindens ATCC 35704 Site: position = -234 score = 57.85 sequence = AGGAACAACAGGGGT... Gene: CLOSCI_03456: Thiamine biosynthesis protein ThiC |
Gene: CLONEX_00820: Thiamine biosynthesis protein ThiC |
|
*
Clostridium hiranonis DSM 13275 Site: position = -275 score = 57.48 sequence = ATCGATGCTAGGGGC... Gene: CLOHIR_00425: Thiamine biosynthesis protein ThiC |
Gene: CBY_1701: Thiamine biosynthesis protein ThiC |
|
*
Clostridium bartlettii DSM 16795 Site: position = -291 score = 48.61 sequence = GAAATATATACAGGG... Gene: CLOBAR_02453: Thiamine biosynthesis protein ThiC |
Thiamine biosynthesis protein ThiC |
| thiS |
*
Clostridium kluyveri DSM 555 Site: position = -318 score = 66.59 sequence = TAATATCTTTAAGGG... Gene: CKL_1639: thiamine biosynthesis protein ThiS |
Gene: CLOSS21_00759: thiamine biosynthesis protein ThiS |
|
|
|
*
Clostridium acetobutylicum ATCC 824 Site: position = -212 score = 73.82 sequence = AATATAGTTAACGGG... Gene: CAC2924: thiamine biosynthesis protein ThiS |
|
Gene: NT01CX_1502: thiamine biosynthesis protein ThiS |
*
Clostridium perfringens ATCC 13124 Site: position = -232 score = 70.24 sequence = AAGATATTGCTAGGG... Gene: CPF_1856: thiamine biosynthesis protein ThiS |
Gene: CD1702A: thiamine biosynthesis protein ThiS |
Gene: Cbei_1518: thiamine biosynthesis protein ThiS |
|
Gene: CLOL250_02986: thiamine biosynthesis protein ThiS |
*
Clostridium scindens ATCC 35704 Site: position = -319 score = 58.83 sequence = AAATTGAACAGGGGA... Gene: CLOSCI_02950: thiamine biosynthesis protein ThiS |
|
|
Gene: CLOHIR_00426: thiamine biosynthesis protein ThiS |
Gene: CBY_3727: thiamine biosynthesis protein ThiS |
|
Gene: CLOBAR_01598: thiamine biosynthesis protein ThiS |
thiamine biosynthesis protein ThiS |
| COG0084 |
Gene: CKL_2678: TatD-related deoxyribonuclease, COG0084 |
|
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*
Clostridium acetobutylicum ATCC 824 Site: position = -156 score = 72.29 sequence = TTTAGTGCTAGGGGT... Gene: CAC1397: TatD-related deoxyribonuclease, COG0084 |
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TatD-related deoxyribonuclease, COG0084 |
| COG0011 |
Gene: CKL_0450: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
|
|
Gene: null: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
|
Gene: CAC1398: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
Gene: CBO2910: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
|
Gene: CPF_1754: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
|
|
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*
Clostridium nexile DSM 1787 Site: position = -226 score = 67.07 sequence = GAAAAGAAATCAGGG... Gene: CLONEX_00344: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
*
Clostridium leptum DSM 753 Site: position = -199 score = 59.95 sequence = ATAGAATACCGGGGT... Gene: CLOLEP_00999: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
Gene: CLOHIR_00449: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
|
*
Clostridium bolteae ATCC BAA-613 Site: position = -189 score = 61.04 sequence = ACAATGAAAAGGGGT... Gene: CLOBOL_05155: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
Gene: CLOBAR_00056: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family |
| thiX |
|
|
|
Gene: null: Thiamin ABC transporter, transmembrane component |
|
Gene: CAC1399: Thiamin ABC transporter, transmembrane component |
|
|
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*
Clostridium difficile 630 Site: position = -496 score = 52.74 sequence = ATAATATATTTCGGG... Gene: CD1980: Thiamin ABC transporter, transmembrane component |
Gene: Cbei_2090: Thiamin ABC transporter, transmembrane component |
|
|
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Gene: CLONEX_00343: Thiamin ABC transporter, transmembrane component |
Gene: CLOLEP_01000: Thiamin ABC transporter, transmembrane component |
Gene: CLOHIR_00450: Thiamin ABC transporter, transmembrane component |
Gene: CBY_0915: Thiamin ABC transporter, transmembrane component |
Gene: CLOBOL_05156: Thiamin ABC transporter, transmembrane component |
|
Thiamin ABC transporter, transmembrane component |
| thiY |
|
|
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Gene: null: Thiamin ABC transporter, substrate-binding component |
|
Gene: CAC1400: Thiamin ABC transporter, substrate-binding component |
|
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Gene: CD1979: Thiamin ABC transporter, substrate-binding component |
Gene: Cbei_2091: Thiamin ABC transporter, substrate-binding component |
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Gene: CLONEX_00340: Thiamin ABC transporter, substrate-binding component |
Gene: CLOLEP_01001: Thiamin ABC transporter, substrate-binding component |
Gene: CLOHIR_00451: Thiamin ABC transporter, substrate-binding component |
|
Gene: CLOBOL_05157: Thiamin ABC transporter, substrate-binding component |
|
Thiamin ABC transporter, substrate-binding component |
| thiZ |
|
|
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Gene: null: Thiamin ABC transporter, ATPase component |
|
Gene: CAC1401: Thiamin ABC transporter, ATPase component |
|
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Gene: CD1978: Thiamin ABC transporter, ATPase component |
Gene: Cbei_2089: Thiamin ABC transporter, ATPase component |
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Gene: CLONEX_00339: Thiamin ABC transporter, ATPase component |
Gene: CLOLEP_01002: Thiamin ABC transporter, ATPase component |
Gene: CLOHIR_00452: Thiamin ABC transporter, ATPase component |
Gene: CBY_0916: Thiamin ABC transporter, ATPase component |
Gene: CLOBOL_05158: Thiamin ABC transporter, ATPase component |
|
Thiamin ABC transporter, ATPase component |
| tenA |
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*
Clostridium perfringens ATCC 13124 Site: position = -321 score = 70.98 sequence = ACTTTATAGCTAGGG... Gene: CPF_2870: Thiaminase II (EC 3.5.99.2) |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -189 score = 72.39 sequence = ACGAGCACTAGGGGA... Gene: Cbei_2088: Thiaminase II (EC 3.5.99.2) |
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*
Clostridium nexile DSM 1787 Site: position = -163 score = 49.66 sequence = TGTGTTTGCGAGGGA... Site: position = -323 score = 70.88 sequence = TACTCAAGCAGGGGG... Gene: CLONEX_00625: Thiaminase II (EC 3.5.99.2) |
|
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*
Clostridium butyricum 5521 Site: position = -248 score = 76.09 sequence = CAAAAATAACTAGGG... Gene: CBY_0917: Thiaminase II (EC 3.5.99.2) |
|
Gene: CLOBAR_02039: Thiaminase II (EC 3.5.99.2) |
Thiaminase II (EC 3.5.99.2) |
| thiT |
*
Clostridium kluyveri DSM 555 Site: position = -164 score = 76.2 sequence = CTTAATGCTAGGGGT... Gene: CKL_2038: Substrate-specific component ThiT of thiamin ECF transporter |
|
*
Clostridium cellulolyticum H10 Site: position = -198 score = 64.37 sequence = ATATTGAAAGGGGAG... Gene: Ccel_2120: Substrate-specific component ThiT of thiamin ECF transporter |
*
Clostridium phytofermentans ISDg Site: position = -145 score = 71.84 sequence = ATTGTATTGCTGGGG... Gene: null: Substrate-specific component ThiT of thiamin ECF transporter |
*
Clostridium tetani E88 Site: position = -193 score = 65.14 sequence = AATGTAGTGCTAGGG... Gene: CTC00254: Substrate-specific component ThiT of thiamin ECF transporter |
*
Clostridium acetobutylicum ATCC 824 Site: position = -201 score = 72.79 sequence = ATATGTGCTAGGGGT... Gene: CAC2928: Substrate-specific component ThiT of thiamin ECF transporter |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -160 score = 78.18 sequence = TTAAGTGCTAGGGGT... Gene: CBO0556: Substrate-specific component ThiT of thiamin ECF transporter |
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Clostridium novyi NT Site: position = -317 score = 70.37 sequence = TTTTTAACTAGGGGT... Gene: NT01CX_1441: Substrate-specific component ThiT of thiamin ECF transporter |
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Clostridium perfringens ATCC 13124 Gene: CPF_2869: Substrate-specific component ThiT of thiamin ECF transporter Site: position = -194 score = 77.04 sequence = TCATGTGCTAGGGGT... Gene: CPF_1622: Substrate-specific component ThiT of thiamin ECF transporter |
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Clostridium beijerincki NCIMB 8052 Site: position = -157 score = 71.95 sequence = TATAATGTGCTAGGG... Gene: Cbei_0066: Substrate-specific component ThiT of thiamin ECF transporter |
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Clostridium sp. OhILAs Site: position = -182 score = 61.7 sequence = TATTTATCGCTAGGG... Gene: Clos_0240: Substrate-specific component ThiT of thiamin ECF transporter |
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Clostridium scindens ATCC 35704 Site: position = -188 score = 57.06 sequence = ATAAGACCCATATGG... Gene: CLOSCI_02958: Substrate-specific component ThiT of thiamin ECF transporter |
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Clostridium nexile DSM 1787 Site: position = -38 score = 59.97 sequence = CAATTTGCTAGGGGA... Gene: CLONEX_00550: Substrate-specific component ThiT of thiamin ECF transporter |
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Clostridium butyricum 5521 Site: position = -186 score = 70.17 sequence = AAGTGTGCTAGGGGT... Gene: CBY_0451: Substrate-specific component ThiT of thiamin ECF transporter |
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Gene: CLOBAR_02038: Substrate-specific component ThiT of thiamin ECF transporter |
Substrate-specific component ThiT of thiamin ECF transporter |
| purF2 |
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Clostridium botulinum A str. ATCC 3502 Site: position = -191 score = 75.69 sequence = TATGTAAATGCAGGG... Gene: CBO2913: Amidophosphoribosyltransferase (EC 2.4.2.14) |
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Amidophosphoribosyltransferase (EC 2.4.2.14) |
| CRON 2. | |||||||||||||||||||||
| ykoF |
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Clostridium leptum DSM 753 Site: position = -291 score = 63.34 sequence = TAGAATTCTAGGGGG... Gene: CLOLEP_00018: Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
| CRON 3. | |||||||||||||||||||||
| CKL_2891 |
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Clostridium kluyveri DSM 555 Site: position = -191 score = 66.14 sequence = ATAACGGACAGGGGA... Gene: CKL_2891: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |