Regulon of TPP in Clostridium nexile DSM 1787

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Clostridiaceae
Under regulation:
- Genes	11
- Operons	4

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -323 Score: 70.9 Sequence: TACTCAAGCAGGGGG... Position: -163 Score: 49.7 Sequence: TGTGTTTGCGAGGGA... Locus tag: CLONEX_00625 Name: tenA Funciton: Thiaminase II (EC 3.5.99.2) Locus tag: CLONEX_00626 Name: thiD Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) Locus tag: CLONEX_00627 Name: thiE Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	CLONEX_00625	tenA	Thiaminase II (EC 3.5.99.2)
	CLONEX_00626	thiD	Phosphomethylpyrimidine kinase (EC 2.7.4.7)
	CLONEX_00627	thiE	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Position: -38 Score: 60 Sequence: CAATTTGCTAGGGGA... Locus tag: CLONEX_00550 Name: thiT Funciton: Substrate-specific component ThiT of thiamin ECF transporter
	CLONEX_00550	thiT	Substrate-specific component ThiT of thiamin ECF transporter
Position: -166 Score: 66.3 Sequence: CAAAAACATAGGGGA... Locus tag: CLONEX_00816 Name: thiW Funciton: Substrate-specific component ThiW of predicted thiazole ECF transporter Locus tag: CLONEX_00817 Name: thiM Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50) Locus tag: CLONEX_00818 Name: thiE Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Locus tag: CLONEX_00819 Name: thiD Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) Locus tag: CLONEX_00820 Name: thiC Funciton: Thiamine biosynthesis protein ThiC
	CLONEX_00816	thiW	Substrate-specific component ThiW of predicted thiazole ECF transporter
	CLONEX_00817	thiM	Hydroxyethylthiazole kinase (EC 2.7.1.50)
	CLONEX_00818	thiE	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
	CLONEX_00819	thiD	Phosphomethylpyrimidine kinase (EC 2.7.4.7)
	CLONEX_00820	thiC	Thiamine biosynthesis protein ThiC
Position: -226 Score: 67.1 Sequence: GAAAAGAAATCAGGG... Locus tag: CLONEX_00344 Name: COG0011 Funciton: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family Locus tag: CLONEX_00343 Name: thiX Funciton: Thiamin ABC transporter, transmembrane component
	CLONEX_00344	COG0011	Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family
	CLONEX_00343	thiX	Thiamin ABC transporter, transmembrane component

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD