Regulog T-box(Thr) - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Thr-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - Thr-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | ||
| Clostridium sp. SS2/1 | 1 | 1 |
| Clostridium cellulolyticum H10 | 2 | 1 |
| Clostridium phytofermentans ISDg | 2 | 2 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 1 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
| Clostridium novyi NT | 1 | 1 |
| Clostridium perfringens ATCC 13124 | 1 | 1 |
| Clostridium difficile 630 | 1 | 1 |
| Clostridium beijerincki NCIMB 8052 | 2 | 2 |
| Clostridium sp. OhILAs | 3 | 2 |
| Clostridium sp. L2-50 | 1 | 1 |
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium leptum DSM 753 | 1 | 1 |
| Clostridium hiranonis DSM 13275 | 1 | 1 |
| Clostridium butyricum 5521 | 2 | 2 |
| Clostridium bolteae ATCC BAA-613 | 1 | 1 |
| Clostridium bartlettii DSM 16795 | 1 | 1 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| thrZ |
Gene: CKL_3196: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium sp. SS2/1 Site: position = -329 score = 102.86 sequence = AGAAAACGTTGATGA... Gene: CLOSS21_01453: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium cellulolyticum H10 Site: position = -251 score = 83.21 sequence = TAAAGGCGTTGACGA... Gene: Ccel_1372: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium phytofermentans ISDg Site: position = -298 score = 93.74 sequence = AAGAAAAGCAATGAC... Gene: null: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium tetani E88 Site: position = -285 score = 112.78 sequence = GTTAAAGGCTAAGAA... Gene: CTC02286: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium acetobutylicum ATCC 824 Site: position = -270 score = 122.13 sequence = AATAAAGGCTTTGAA... Gene: CAC2362: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium botulinum A str. ATCC 3502 Site: position = -271 score = 113.43 sequence = TTTATAAACTATGAA... Gene: CBO3138: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium novyi NT Site: position = -303 score = 95.09 sequence = TAAAGACAATGATAA... Gene: NT01CX_1760: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium difficile 630 Site: position = -301 score = 90.55 sequence = TCATAGTGTTGAAGA... Gene: CD0574: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium beijerincki NCIMB 8052 Site: position = -394 score = 104.29 sequence = TTTTTAGGCAATGAA... Gene: Cbei_3206: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium sp. OhILAs Site: position = -322 score = 99.19 sequence = TACTTTAGCATTGAA... Gene: Clos_1980: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Gene: CLOSCI_01251: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium hiranonis DSM 13275 Site: position = -308 score = 106.75 sequence = TATTAGCGATGAAAA... Gene: CLOHIR_01888: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium butyricum 5521 Site: position = -314 score = 99.12 sequence = TATAGGCAATGAAAG... Gene: CBY_1429: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium bolteae ATCC BAA-613 Site: position = -234 score = 60.9 sequence = AGCAAAGGCATTGAG... Gene: CLOBOL_01887: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Clostridium bartlettii DSM 16795 Site: position = -304 score = 107.55 sequence = TATAATTGCGATGAA... Gene: CLOBAR_01310: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Threonyl-tRNA synthetase (EC 6.1.1.3) |
| thrS |
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Gene: Ccel_1373: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium phytofermentans ISDg Site: position = -309 score = 97.09 sequence = ATAATACGTTGATGA... Gene: null: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium perfringens ATCC 13124 Site: position = -300 score = 99.03 sequence = TTAACACAATGAAGA... Gene: CPF_2631: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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*
Clostridium beijerincki NCIMB 8052 Site: position = -394 score = 56.15 sequence = AATAAACACGTTGAT... Gene: Cbei_0293: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium sp. L2-50 Site: position = -345 score = 87.21 sequence = GAATAACGTGTTGAT... Gene: CLOL250_02259: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium nexile DSM 1787 Site: position = -327 score = 98.7 sequence = AGAAAACACGTTGAT... Gene: CLONEX_02841: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Clostridium leptum DSM 753 Site: position = -241 score = 85.05 sequence = CAAAAACGTTGAGAA... Gene: CLOLEP_03968: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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*
Clostridium butyricum 5521 Site: position = -376 score = 57.05 sequence = AGATAACACGTTGAT... Gene: CBY_3005: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Threonyl-tRNA synthetase (EC 6.1.1.3) |
| CRON 2. | |||||||||||||||||||||
| Clos_0845 |
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Clostridium sp. OhILAs Site: position = -439 score = 96.41 sequence = CAAAGACAGTGATGA... Gene: Clos_0845: Membrane protein |
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Membrane protein |
| ilvA |
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Gene: Clos_0846: Threonine dehydratase (EC 4.3.1.19) |
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Threonine dehydratase (EC 4.3.1.19) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |