Regulog T-box(Thr) - Clostridiaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Thr-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - T-box
By effector - Thr-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Clostridium kluyveri DSM 555
Clostridium sp. SS2/1	1	1
Clostridium cellulolyticum H10	2	1
Clostridium phytofermentans ISDg	2	2
Clostridium tetani E88	1	1
Clostridium acetobutylicum ATCC 824	1	1
Clostridium botulinum A str. ATCC 3502	1	1
Clostridium novyi NT	1	1
Clostridium perfringens ATCC 13124	1	1
Clostridium difficile 630	1	1
Clostridium beijerincki NCIMB 8052	2	2
Clostridium sp. OhILAs	3	2
Clostridium sp. L2-50	1	1
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787	1	1
Clostridium leptum DSM 753	1	1
Clostridium hiranonis DSM 13275	1	1
Clostridium butyricum 5521	2	2
Clostridium bolteae ATCC BAA-613	1	1
Clostridium bartlettii DSM 16795	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																					Function

CRON 1.
thrZ	Clostridium kluyveri DSM 555 Gene: CKL_3196: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium sp. SS2/1 Site: position = -329 score = 102.86 sequence = AGAAAACGTTGATGA... Gene: CLOSS21_01453: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium cellulolyticum H10 Site: position = -251 score = 83.21 sequence = TAAAGGCGTTGACGA... Gene: Ccel_1372: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium phytofermentans ISDg Site: position = -298 score = 93.74 sequence = AAGAAAAGCAATGAC... Gene: null: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium tetani E88 Site: position = -285 score = 112.78 sequence = GTTAAAGGCTAAGAA... Gene: CTC02286: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium acetobutylicum ATCC 824 Site: position = -270 score = 122.13 sequence = AATAAAGGCTTTGAA... Gene: CAC2362: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium botulinum A str. ATCC 3502 Site: position = -271 score = 113.43 sequence = TTTATAAACTATGAA... Gene: CBO3138: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium novyi NT Site: position = -303 score = 95.09 sequence = TAAAGACAATGATAA... Gene: NT01CX_1760: Threonyl-tRNA synthetase (EC 6.1.1.3)	Clostridium perfringens ATCC 13124	* Clostridium difficile 630 Site: position = -301 score = 90.55 sequence = TCATAGTGTTGAAGA... Gene: CD0574: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium beijerincki NCIMB 8052 Site: position = -394 score = 104.29 sequence = TTTTTAGGCAATGAA... Gene: Cbei_3206: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium sp. OhILAs Site: position = -322 score = 99.19 sequence = TACTTTAGCATTGAA... Gene: Clos_1980: Threonyl-tRNA synthetase (EC 6.1.1.3)	Clostridium sp. L2-50	Clostridium scindens ATCC 35704 Gene: CLOSCI_01251: Threonyl-tRNA synthetase (EC 6.1.1.3)	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	* Clostridium hiranonis DSM 13275 Site: position = -308 score = 106.75 sequence = TATTAGCGATGAAAA... Gene: CLOHIR_01888: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium butyricum 5521 Site: position = -314 score = 99.12 sequence = TATAGGCAATGAAAG... Gene: CBY_1429: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium bolteae ATCC BAA-613 Site: position = -234 score = 60.9 sequence = AGCAAAGGCATTGAG... Gene: CLOBOL_01887: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium bartlettii DSM 16795 Site: position = -304 score = 107.55 sequence = TATAATTGCGATGAA... Gene: CLOBAR_01310: Threonyl-tRNA synthetase (EC 6.1.1.3)	Threonyl-tRNA synthetase (EC 6.1.1.3)
thrS	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_1373: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium phytofermentans ISDg Site: position = -309 score = 97.09 sequence = ATAATACGTTGATGA... Gene: null: Threonyl-tRNA synthetase (EC 6.1.1.3)	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	* Clostridium perfringens ATCC 13124 Site: position = -300 score = 99.03 sequence = TTAACACAATGAAGA... Gene: CPF_2631: Threonyl-tRNA synthetase (EC 6.1.1.3)	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -394 score = 56.15 sequence = AATAAACACGTTGAT... Gene: Cbei_0293: Threonyl-tRNA synthetase (EC 6.1.1.3)	Clostridium sp. OhILAs	* Clostridium sp. L2-50 Site: position = -345 score = 87.21 sequence = GAATAACGTGTTGAT... Gene: CLOL250_02259: Threonyl-tRNA synthetase (EC 6.1.1.3)	Clostridium scindens ATCC 35704	* Clostridium nexile DSM 1787 Site: position = -327 score = 98.7 sequence = AGAAAACACGTTGAT... Gene: CLONEX_02841: Threonyl-tRNA synthetase (EC 6.1.1.3)	* Clostridium leptum DSM 753 Site: position = -241 score = 85.05 sequence = CAAAAACGTTGAGAA... Gene: CLOLEP_03968: Threonyl-tRNA synthetase (EC 6.1.1.3)	Clostridium hiranonis DSM 13275	* Clostridium butyricum 5521 Site: position = -376 score = 57.05 sequence = AGATAACACGTTGAT... Gene: CBY_3005: Threonyl-tRNA synthetase (EC 6.1.1.3)	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Threonyl-tRNA synthetase (EC 6.1.1.3)

CRON 2.
Clos_0845	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	* Clostridium sp. OhILAs Site: position = -439 score = 96.41 sequence = CAAAGACAGTGATGA... Gene: Clos_0845: Membrane protein	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Membrane protein
ilvA	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs Gene: Clos_0846: Threonine dehydratase (EC 4.3.1.19)	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Threonine dehydratase (EC 4.3.1.19)