Regulog T-box(Lys) - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Lys-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - Lys-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | ||
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | ||
| Clostridium phytofermentans ISDg | ||
| Clostridium tetani E88 | ||
| Clostridium acetobutylicum ATCC 824 | ||
| Clostridium botulinum A str. ATCC 3502 | ||
| Clostridium novyi NT | ||
| Clostridium perfringens ATCC 13124 | ||
| Clostridium difficile 630 | ||
| Clostridium beijerincki NCIMB 8052 | 1 | 1 |
| Clostridium sp. OhILAs | ||
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | ||
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | ||
| Clostridium butyricum 5521 | ||
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium bartlettii DSM 16795 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| lysU |
Gene: CKL_0178: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CLOSS21_02719: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: Ccel_0396: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
2
Clostridium phytofermentans ISDg Gene: null: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) Gene: null: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CTC00211: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CAC3197: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CBO3518: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: NT01CX_1046: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CPF_2781: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CD3552: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
*2
Clostridium beijerincki NCIMB 8052 Site: position = -338 score = 48.08 sequence = AATGAAAACCCAGCA... Gene: Cbei_3591: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) Gene: Cbei_0105: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: Clos_0450: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CLOL250_02627: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CLOSCI_00952: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CLONEX_00555: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CLOLEP_01627: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CLOHIR_01626: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CBY_2190: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CLOBOL_04799: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Gene: CLOBAR_00239: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Lysyl-tRNA synthetase (class II) (EC 6.1.1.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |