Regulons of Clostridium cellulolyticum H10
|
Allows to visualize regulome content in the context of metabolic pathways |
|
| Type |
Regulator |
Effector |
Pathway |
Operons |
Sites |
| RNA |
Cobalamin |
Adenosylcobalamin |
Cobalamin biosynthesis |
5 |
2 |
| RNA |
FMN |
Flavin mononucleotide |
Riboflavin biosynthesis |
2 |
2 |
| RNA |
Glycine |
Glycine |
Glycine metabolism |
4 |
2 |
| RNA |
L10_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
L19_leader |
|
Ribosome biogenesis |
1 |
1 |
| RNA |
L20_leader |
|
Ribosome biogenesis |
3 |
1 |
| RNA |
Lysine |
Lysine |
Lysine biosynthesis |
4 |
1 |
| RNA |
PreQ1 |
Pre-queuosine1 |
Queuosine biosynthesis |
2 |
1 |
| RNA |
Purine |
Adenine; Guanine |
Purine metabolism |
5 |
1 |
| RNA |
PyrR |
PyrR |
Pyrimidine metabolism |
2 |
2 |
| RNA |
SAM |
S-adenosylmethionine |
Methionine biosynthesis |
5 |
1 |
| RNA |
T-box(Ala) |
Ala-tRNA |
Amino acid metabolism |
2 |
2 |
| RNA |
T-box(Asp) |
Asp-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Ile) |
Ile-tRNA |
Amino acid metabolism |
4 |
1 |
| RNA |
T-box(Leu) |
Leu-tRNA |
Amino acid metabolism |
2 |
2 |
| RNA |
T-box(Met) |
Met-tRNA |
Amino acid metabolism |
2 |
1 |
| RNA |
T-box(Phe) |
Phe-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Ser) |
Ser-tRNA |
Amino acid metabolism |
2 |
1 |
| RNA |
T-box(Thr) |
Thr-tRNA |
Amino acid metabolism |
1 |
1 |
| RNA |
T-box(Trp) |
Trp-tRNA |
Amino acid metabolism |
3 |
1 |
| RNA |
T-box(Tyr) |
Tyr-tRNA |
Amino acid metabolism |
3 |
2 |
| RNA |
T-box(Val) |
Val-tRNA |
Amino acid metabolism |
2 |
1 |
| RNA |
THF |
Tetrahydrofolate |
Folate metabolism |
1 |
1 |
| RNA |
TPP |
Thiamine pyrophosphate |
Thiamine biosynthesis |
2 |
3 |
| RNA |
glmS |
Glucosamine-6-phosphate |
Amino sugar metabolism |
1 |
1 |
| RNA |
ydaO-yuaA |
|
Cell wall metabolism; Osmotic stress response |
5 |
4 |
| RNA |
ykkC-yxkD |
|
Multidrug resistance |
2 |
1 |
| RNA |
ykoK |
Magnesium ion, (Mg2+) |
Magnesium homeostasis |
1 |
1 |
| RNA |
yybP-ykoY |
|
|
5 |
2 |
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Regulated Genes
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Regulatory Sites
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