Regulog Lysine - Clostridiaceae

Properties
Regulator type:	RNA regulatory element
Name:	Lysine
RFAM:	RF00168
Regulation mode:
Biological process:	Lysine biosynthesis
Effector:	Lysine
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - Lysine
By effector - Lysine
By pathway - Lysine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Clostridium kluyveri DSM 555	3	2
Clostridium sp. SS2/1
Clostridium cellulolyticum H10	3	1
Clostridium phytofermentans ISDg	3	2
Clostridium tetani E88	2	2
Clostridium acetobutylicum ATCC 824	1	1
Clostridium botulinum A str. ATCC 3502	4	3
Clostridium novyi NT	3	3
Clostridium perfringens ATCC 13124	3	3
Clostridium difficile 630	8	4
Clostridium beijerincki NCIMB 8052	2	2
Clostridium sp. OhILAs	4	2
Clostridium sp. L2-50	2	1
Clostridium scindens ATCC 35704	1	1
Clostridium nexile DSM 1787	1	1
Clostridium leptum DSM 753	4	1
Clostridium hiranonis DSM 13275	7	3
Clostridium butyricum 5521	1	1
Clostridium bolteae ATCC BAA-613	3	2
Clostridium bartlettii DSM 16795	7	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																					Function

CRON 1.
lysC	* Clostridium kluyveri DSM 555 Site: position = -401 score = 97.22 sequence = CCTAGGGTAGAGGTG... Gene: CKL_0607: Aspartokinase (EC 2.7.2.4)	Clostridium sp. SS2/1 Gene: CLOSS21_02234: Aspartokinase (EC 2.7.2.4)	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg Gene: null: Aspartokinase (EC 2.7.2.4)	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	* Clostridium botulinum A str. ATCC 3502 Site: position = -332 score = 94.98 sequence = CTACTTATGGAGAGG... Gene: CBO3337: Aspartokinase (EC 2.7.2.4)	Clostridium novyi NT	Clostridium perfringens ATCC 13124	* Clostridium difficile 630 Site: position = -251 score = 100.49 sequence = AGCCTAGGGTAGAGG... Gene: CD2054: Aspartokinase (EC 2.7.2.4)	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704 Gene: CLOSCI_03696: Aspartokinase (EC 2.7.2.4)	Clostridium nexile DSM 1787 Gene: CLONEX_02746: Aspartokinase (EC 2.7.2.4)	Clostridium leptum DSM 753 Gene: CLOLEP_02735: Aspartokinase (EC 2.7.2.4)	* Clostridium hiranonis DSM 13275 Site: position = -300 score = 81.7 sequence = ACCAAGGTAGAGGCG... Gene: CLOHIR_01388: Aspartokinase (EC 2.7.2.4)	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_02433: Aspartokinase (EC 2.7.2.4)	* Clostridium bartlettii DSM 16795 Site: position = -243 score = 86.18 sequence = AACCTAGGGTAGAGG... Gene: CLOBAR_01961: Aspartokinase (EC 2.7.2.4)	Aspartokinase (EC 2.7.2.4)
lysA	Clostridium kluyveri DSM 555 Gene: CKL_0608: Diaminopimelate decarboxylase (EC 4.1.1.20)	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2534: Diaminopimelate decarboxylase (EC 4.1.1.20)	Clostridium phytofermentans ISDg	* Clostridium tetani E88 Site: position = -247 score = 93.78 sequence = TACCCAGGGTAGAGG... Gene: CTC02456: Diaminopimelate decarboxylase (EC 4.1.1.20)	* Clostridium acetobutylicum ATCC 824 Site: position = -279 score = 94.26 sequence = CCTTTTGTAGAGGTG... Gene: CAC0608: Diaminopimelate decarboxylase (EC 4.1.1.20)	Clostridium botulinum A str. ATCC 3502 Gene: CBO3336: Diaminopimelate decarboxylase (EC 4.1.1.20)	* Clostridium novyi NT Site: position = -319 score = 100.31 sequence = CCTAAGGTAGAGGTG... Gene: NT01CX_1352: Diaminopimelate decarboxylase (EC 4.1.1.20)	* Clostridium perfringens ATCC 13124 Site: position = -302 score = 97.52 sequence = ACCAAAGTAGAGGTG... Gene: CPF_0576: Diaminopimelate decarboxylase (EC 4.1.1.20)	Clostridium difficile 630 Gene: CD2053: Diaminopimelate decarboxylase (EC 4.1.1.20)	* Clostridium beijerincki NCIMB 8052 Site: position = -487 score = 86.1 sequence = GACCTGGGGTAGAGG... Gene: Cbei_4787: Diaminopimelate decarboxylase (EC 4.1.1.20)	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753 Gene: CLOLEP_02380: Diaminopimelate decarboxylase (EC 4.1.1.20)	Clostridium hiranonis DSM 13275 Gene: CLOHIR_01389: Diaminopimelate decarboxylase (EC 4.1.1.20)	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_01960: Diaminopimelate decarboxylase (EC 4.1.1.20)	Diaminopimelate decarboxylase (EC 4.1.1.20)

CRON 2.
asd	Clostridium kluyveri DSM 555 Gene: CKL_3207: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium sp. SS2/1 Gene: CLOSS21_01903: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium cellulolyticum H10 Gene: Ccel_2591: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium phytofermentans ISDg Gene: null: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium tetani E88 Gene: CTC02293: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	2 Clostridium acetobutylicum ATCC 824 Gene: CAC0022: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Gene: CAC0568: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium botulinum A str. ATCC 3502 Gene: CBO3151: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium novyi NT Gene: NT01CX_1747: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium perfringens ATCC 13124 Gene: CPF_2160: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Clostridium difficile 630 Site: position = -346 score = 99.85 sequence = CCTAGGGTAGAGGTA... Gene: CD3224: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	2 Clostridium beijerincki NCIMB 8052 Gene: Cbei_1797: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) Gene: Cbei_0518: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium sp. OhILAs Gene: Clos_1162: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium sp. L2-50 Gene: CLOL250_02800: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium scindens ATCC 35704 Gene: CLOSCI_01339: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium nexile DSM 1787 Gene: CLONEX_03027: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Clostridium leptum DSM 753 Site: position = -320 score = 104.92 sequence = CCTAAGATAGAGGTG... Gene: CLOLEP_03139: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Clostridium hiranonis DSM 13275 Site: position = -393 score = 88.93 sequence = TAACCTGCGTAGAGG... Gene: CLOHIR_00818: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium butyricum 5521 Gene: CBY_1203: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_02970: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Clostridium bartlettii DSM 16795 Site: position = -341 score = 99.29 sequence = TAACCTAAGTAGAGG... Gene: CLOBAR_00365: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
dapA	Clostridium kluyveri DSM 555 Gene: CKL_3206: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium sp. SS2/1 Gene: CLOSS21_00345: Dihydrodipicolinate synthase (EC 4.2.1.52)	* Clostridium cellulolyticum H10 Site: position = -277 score = 112.12 sequence = TATGTAAGATAGAGG... Gene: Ccel_0526: Dihydrodipicolinate synthase (EC 4.2.1.52)	* Clostridium phytofermentans ISDg Site: position = -298 score = 108.23 sequence = AACAATTGGTAGAGG... Gene: null: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium tetani E88 Gene: CTC02294: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium acetobutylicum ATCC 824 Gene: CAC2378: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium botulinum A str. ATCC 3502 Gene: CBO3152: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium novyi NT Gene: NT01CX_1746: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium perfringens ATCC 13124 Gene: CPF_2161: Dihydrodipicolinate synthase (EC 4.2.1.52)	2 Clostridium difficile 630 Gene: CD3223: Dihydrodipicolinate synthase (EC 4.2.1.52) Gene: CD3225: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium beijerincki NCIMB 8052 Gene: Cbei_1796: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium sp. OhILAs Gene: Clos_1163: Dihydrodipicolinate synthase (EC 4.2.1.52)	* Clostridium sp. L2-50 Site: position = -227 score = 104.67 sequence = AATTCAGTAGAGGCG... Gene: CLOL250_00644: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium scindens ATCC 35704 Gene: CLOSCI_03684: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium nexile DSM 1787 Gene: CLONEX_02736: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium leptum DSM 753 Gene: CLOLEP_03140: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium hiranonis DSM 13275 Gene: CLOHIR_00817: Dihydrodipicolinate synthase (EC 4.2.1.52)	Clostridium butyricum 5521 Gene: CBY_0567: Dihydrodipicolinate synthase (EC 4.2.1.52)	* Clostridium bolteae ATCC BAA-613 Site: position = -328 score = 98.04 sequence = ATCATAGAGTAGAGG... Gene: CLOBOL_04168: Dihydrodipicolinate synthase (EC 4.2.1.52)	2 Clostridium bartlettii DSM 16795 Gene: CLOBAR_02458: Dihydrodipicolinate synthase (EC 4.2.1.52) Gene: CLOBAR_00364: Dihydrodipicolinate synthase (EC 4.2.1.52)	Dihydrodipicolinate synthase (EC 4.2.1.52)
dapB	2 Clostridium kluyveri DSM 555 Gene: CKL_3205: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CKL_2799: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium sp. SS2/1 Gene: CLOSS21_00346: Dihydrodipicolinate reductase (EC 1.3.1.26)	2 Clostridium cellulolyticum H10 Gene: Ccel_0519: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: Ccel_0525: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium phytofermentans ISDg Gene: null: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium tetani E88 Gene: CTC02295: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium acetobutylicum ATCC 824 Gene: CAC2379: Dihydrodipicolinate reductase (EC 1.3.1.26)	2 Clostridium botulinum A str. ATCC 3502 Gene: CBO3153: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CBO0791: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium novyi NT Gene: NT01CX_1745: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium perfringens ATCC 13124 Gene: CPF_2162: Dihydrodipicolinate reductase (EC 1.3.1.26)	2 Clostridium difficile 630 Gene: CD3226: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CD3229: Dihydrodipicolinate reductase (EC 1.3.1.26)	2 Clostridium beijerincki NCIMB 8052 Gene: Cbei_1795: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: Cbei_2934: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium sp. OhILAs Gene: Clos_1164: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium sp. L2-50 Gene: CLOL250_00645: Dihydrodipicolinate reductase (EC 1.3.1.26)	2 Clostridium scindens ATCC 35704 Gene: CLOSCI_03685: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CLOSCI_00327: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium nexile DSM 1787 Gene: CLONEX_02737: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium leptum DSM 753 Gene: CLOLEP_03141: Dihydrodipicolinate reductase (EC 1.3.1.26)	2 Clostridium hiranonis DSM 13275 Gene: CLOHIR_00816: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CLOHIR_00814: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium butyricum 5521 Gene: CBY_0568: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04167: Dihydrodipicolinate reductase (EC 1.3.1.26)	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00363: Dihydrodipicolinate reductase (EC 1.3.1.26)	Dihydrodipicolinate reductase (EC 1.3.1.26)
dapD	Clostridium kluyveri DSM 555 Gene: CKL_3211: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC2381: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Clostridium botulinum A str. ATCC 3502 Gene: CBO3156: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Clostridium novyi NT Gene: NT01CX_1738: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Clostridium perfringens ATCC 13124 Gene: CPF_2165: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Clostridium difficile 630 Gene: CD3227: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	2 Clostridium beijerincki NCIMB 8052 Gene: Cbei_4881: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) Gene: Cbei_1791: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787 Gene: CLONEX_00178: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275 Gene: CLOHIR_00815: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Clostridium butyricum 5521 Gene: CBY_1863: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00362: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
lysC2	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_0524: Aspartokinase II ( EC:2.7.2.4 )	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753 Gene: CLOLEP_03142: Aspartokinase II ( EC:2.7.2.4 )	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Aspartokinase II ( EC:2.7.2.4 )

CRON 3.
Clos_0722	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	* Clostridium sp. OhILAs Site: position = -333 score = 108.64 sequence = GGTGGGGTAGAGGCG... Gene: Clos_0722: Amino acid ABC transporter, amino acid-binding protein	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00196: Amino acid ABC transporter, amino acid-binding protein	Amino acid ABC transporter, amino acid-binding protein
Clos_0723	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs Gene: Clos_0723: Amino acid ABC transporter, permease protein	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00197: Amino acid ABC transporter, permease protein	Amino acid ABC transporter, permease protein
Clos_0724	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs Gene: Clos_0724: Amino acid ABC transporter, ATP-binding protein	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00198: Amino acid ABC transporter, ATP-binding protein	Amino acid ABC transporter, ATP-binding protein

CRON 4.
lysP	* Clostridium kluyveri DSM 555 Site: position = -295 score = 105.95 sequence = TTTAAGATAGAGGTG... Gene: CKL_1545: Lysine-specific permease	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	2 Clostridium acetobutylicum ATCC 824 Gene: CAC3164: Lysine-specific permease Gene: CAC3347: Lysine-specific permease	* Clostridium botulinum A str. ATCC 3502 Site: position = -305 score = 112.44 sequence = ACTGAGGTAGAGGTG... Gene: CBO0250: Lysine-specific permease	* Clostridium novyi NT Site: position = -340 score = 110.52 sequence = TAACTAAGATAGAGG... Gene: NT01CX_2354: Lysine-specific permease	* Clostridium perfringens ATCC 13124 Site: position = -301 score = 117.81 sequence = TAACTGAGATAGAGG... Gene: CPF_1369: Lysine-specific permease	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -327 score = 123.83 sequence = TAACTAAGATAGAGG... Gene: Cbei_0788: Lysine-specific permease	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Lysine-specific permease

CRON 5.
yvsH	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	* Clostridium sp. OhILAs Site: position = -365 score = 106.87 sequence = CGGGTGGGGTAGAGG... Gene: Clos_0865: Amino acid permease	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_00048: Amino acid permease	Amino acid permease

CRON 6.
COG1288	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	* Clostridium difficile 630 Site: position = -309 score = 111.91 sequence = AGATTGAGGTAGAGG... Gene: CD3100: C4-dicarboxylate anaerobic carrier-like	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	C4-dicarboxylate anaerobic carrier-like

CRON 7.
alsT	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	* Clostridium bolteae ATCC BAA-613 Site: position = -338 score = 79.92 sequence = AGGATGCGATAGAGG... Gene: CLOBOL_04690: Na+/alanine symporter family transporter	Clostridium bartlettii DSM 16795	Na+/alanine symporter family transporter

CRON 8.
lysW	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1 Gene: CLOSS21_01929: Predicted lysine transporter, NhaC family	Clostridium cellulolyticum H10	* Clostridium phytofermentans ISDg Site: position = -312 score = 100.12 sequence = ACATTGATAGAGGTG... Gene: null: Predicted lysine transporter, NhaC family	* Clostridium tetani E88 Site: position = -318 score = 106.39 sequence = AGAAAGGTAGAGGCG... Gene: CTC00567: Predicted lysine transporter, NhaC family	Clostridium acetobutylicum ATCC 824	* Clostridium botulinum A str. ATCC 3502 Site: position = -334 score = 123.03 sequence = AAGTAGATAGAGGTG... Gene: CBO0421: Predicted lysine transporter, NhaC family	* Clostridium novyi NT Site: position = -307 score = 116.36 sequence = GTTTAGTGATAGAGG... Gene: NT01CX_0133: Predicted lysine transporter, NhaC family	* Clostridium perfringens ATCC 13124 Site: position = -335 score = 110.57 sequence = AAAAAGAGGTAGAGG... Gene: CPF_2850: Predicted lysine transporter, NhaC family	* Clostridium difficile 630 Site: position = -319 score = 101.75 sequence = AGAAGGGTAGAGGCG... Gene: CD1655: Predicted lysine transporter, NhaC family	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50 Gene: CLOL250_01927: Predicted lysine transporter, NhaC family	* Clostridium scindens ATCC 35704 Site: position = -204 score = 78.15 sequence = TGGACTTGATAGAGG... Gene: CLOSCI_01581: Predicted lysine transporter, NhaC family	* Clostridium nexile DSM 1787 Site: position = -368 score = 108.1 sequence = CTAAAAGGATAGAGG... Gene: CLONEX_03655: Predicted lysine transporter, NhaC family	Clostridium leptum DSM 753 Gene: CLOLEP_01079: Predicted lysine transporter, NhaC family	* Clostridium hiranonis DSM 13275 Site: position = -275 score = 94.34 sequence = TAAATGATAGAGGCG... Gene: CLOHIR_01339: Predicted lysine transporter, NhaC family	* Clostridium butyricum 5521 Site: position = -425 score = 117.54 sequence = CGAAAGAGGTAGAGG... Gene: CBY_2257: Predicted lysine transporter, NhaC family	Clostridium bolteae ATCC BAA-613	* Clostridium bartlettii DSM 16795 Site: position = -263 score = 97.44 sequence = AGTAAGGTAGAGGTG... Gene: CLOBAR_01794: Predicted lysine transporter, NhaC family	Predicted lysine transporter, NhaC family