Regulog ykoK - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | ykoK |
| RFAM: | RF00380 |
| Regulation mode: | |
| Biological process: | Magnesium homeostasis |
| Effector: | Magnesium ion, (Mg2+) |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - ykoK
- By effector - Magnesium ion, (Mg2+)
- By pathway - Magnesium homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 1 | 1 |
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | 1 | 1 |
| Clostridium phytofermentans ISDg | ||
| Clostridium tetani E88 | ||
| Clostridium acetobutylicum ATCC 824 | 4 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 3 | 2 |
| Clostridium novyi NT | ||
| Clostridium perfringens ATCC 13124 | 1 | 1 |
| Clostridium difficile 630 | ||
| Clostridium beijerincki NCIMB 8052 | 2 | 1 |
| Clostridium sp. OhILAs | ||
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | ||
| Clostridium butyricum 5521 | 1 | 1 |
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium bartlettii DSM 16795 |
| Genes | Function | ||||||||||||||||||||
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| CRON 1. | |||||||||||||||||||||
| CBY_0446 |
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Clostridium butyricum 5521 Site: position = -422 score = 121.67 sequence = AAAATAAATTTGTTA... Gene: CBY_0446: hypothetical protein |
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hypothetical protein |
| CRON 2. | |||||||||||||||||||||
| corA |
Gene: CKL_3798: Magnesium and cobalt transport protein CorA |
2
Clostridium sp. SS2/1 Gene: CLOSS21_00070: Magnesium and cobalt transport protein CorA Gene: CLOSS21_00155: Magnesium and cobalt transport protein CorA |
*
Clostridium cellulolyticum H10 Site: position = -388 score = 154.26 sequence = ACTAAATATTCGTTA... Gene: Ccel_2001: Magnesium and cobalt transport protein CorA |
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Gene: CAC0294: Magnesium and cobalt transport protein CorA |
Gene: CBO0050: Magnesium and cobalt transport protein CorA |
Gene: NT01CX_0767: Magnesium and cobalt transport protein CorA |
Gene: CPF_2767: Magnesium and cobalt transport protein CorA |
Gene: CD2122: Magnesium and cobalt transport protein CorA |
Gene: Cbei_0110: Magnesium and cobalt transport protein CorA |
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Gene: CLOL250_01440: Magnesium and cobalt transport protein CorA |
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Gene: CLOLEP_02206: Magnesium and cobalt transport protein CorA |
Gene: CLOHIR_00641: Magnesium and cobalt transport protein CorA |
Gene: CBY_2174: Magnesium and cobalt transport protein CorA |
Gene: CLOBOL_06972: Magnesium and cobalt transport protein CorA |
Gene: CLOBAR_02030: Magnesium and cobalt transport protein CorA |
Magnesium and cobalt transport protein CorA |
| CRON 3. | |||||||||||||||||||||
| CBO2870 |
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Clostridium botulinum A str. ATCC 3502 Site: position = -231 score = 92.49 sequence = AAATAAACCTCGGTA... Gene: CBO2870: hypothetical protein |
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hypothetical protein |
| mgtB |
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Gene: CBO2869: Magnesium-translocating P-type ATPase (EC 3.6.3.2) |
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Clostridium perfringens ATCC 13124 Site: position = -484 score = 75.01 sequence = ATATTAATCGGTAGG... Gene: CPF_1153: Magnesium-translocating P-type ATPase (EC 3.6.3.2) |
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Magnesium-translocating P-type ATPase (EC 3.6.3.2) |
| CRON 4. | |||||||||||||||||||||
| rimM |
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Clostridium acetobutylicum ATCC 824 Site: position = -450 score = 137.37 sequence = AAAGTTTTAGTTAGG... Gene: CAC0683: 16S rRNA processing protein RimM |
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16S rRNA processing protein RimM |
| mgtE |
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Clostridium kluyveri DSM 555 Site: position = -386 score = 148.74 sequence = ATTTTTGTTATGTTA... Gene: CKL_3588: Magnesium transporter |
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Gene: CAC0684: Magnesium transporter |
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Clostridium botulinum A str. ATCC 3502 Site: position = -368 score = 149.13 sequence = AATAATGTACGTTAG... Gene: CBO0203: Magnesium transporter |
Gene: NT01CX_1389: Magnesium transporter |
Gene: CPF_1530: Magnesium transporter |
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*2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_0576: Magnesium transporter Site: position = -406 score = 153.89 sequence = AAAAACTTTGTTAGG... Gene: Cbei_3363: Magnesium transporter |
Gene: Clos_2073: Magnesium transporter |
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Gene: CLOSCI_01715: Magnesium transporter |
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Clostridium nexile DSM 1787 Site: position = -354 score = 76.83 sequence = ATAAGATTCGGTAGG... Gene: CLONEX_03217: Magnesium transporter |
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Gene: CBY_4053: Magnesium transporter |
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Magnesium transporter |
| mntH |
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*2
Clostridium acetobutylicum ATCC 824 Site: position = -356 score = 156.28 sequence = AATAATGTATTGTTA... Gene: CAC3329: Manganese transport protein MntH Gene: CAC0685: Manganese transport protein MntH |
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Gene: Cbei_3364: Manganese transport protein MntH |
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Manganese transport protein MntH |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |