Regulog ykoK - Clostridiaceae

Properties
Regulator type:	RNA regulatory element
Name:	ykoK
RFAM:	RF00380
Regulation mode:
Biological process:	Magnesium homeostasis
Effector:	Magnesium ion, (Mg2+)
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - ykoK
By effector - Magnesium ion, (Mg2+)
By pathway - Magnesium homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Clostridium kluyveri DSM 555	1	1
Clostridium sp. SS2/1
Clostridium cellulolyticum H10	1	1
Clostridium phytofermentans ISDg
Clostridium tetani E88
Clostridium acetobutylicum ATCC 824	4	2
Clostridium botulinum A str. ATCC 3502	3	2
Clostridium novyi NT
Clostridium perfringens ATCC 13124	1	1
Clostridium difficile 630
Clostridium beijerincki NCIMB 8052	2	1
Clostridium sp. OhILAs
Clostridium sp. L2-50
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787	1	1
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275
Clostridium butyricum 5521	1	1
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																					Function

CRON 1.
CBY_0446	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	* Clostridium butyricum 5521 Site: position = -422 score = 121.67 sequence = AAAATAAATTTGTTA... Gene: CBY_0446: hypothetical protein	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 2.
corA	Clostridium kluyveri DSM 555 Gene: CKL_3798: Magnesium and cobalt transport protein CorA	2 Clostridium sp. SS2/1 Gene: CLOSS21_00070: Magnesium and cobalt transport protein CorA Gene: CLOSS21_00155: Magnesium and cobalt transport protein CorA	* Clostridium cellulolyticum H10 Site: position = -388 score = 154.26 sequence = ACTAAATATTCGTTA... Gene: Ccel_2001: Magnesium and cobalt transport protein CorA	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC0294: Magnesium and cobalt transport protein CorA	Clostridium botulinum A str. ATCC 3502 Gene: CBO0050: Magnesium and cobalt transport protein CorA	Clostridium novyi NT Gene: NT01CX_0767: Magnesium and cobalt transport protein CorA	Clostridium perfringens ATCC 13124 Gene: CPF_2767: Magnesium and cobalt transport protein CorA	Clostridium difficile 630 Gene: CD2122: Magnesium and cobalt transport protein CorA	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0110: Magnesium and cobalt transport protein CorA	Clostridium sp. OhILAs	Clostridium sp. L2-50 Gene: CLOL250_01440: Magnesium and cobalt transport protein CorA	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753 Gene: CLOLEP_02206: Magnesium and cobalt transport protein CorA	Clostridium hiranonis DSM 13275 Gene: CLOHIR_00641: Magnesium and cobalt transport protein CorA	Clostridium butyricum 5521 Gene: CBY_2174: Magnesium and cobalt transport protein CorA	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_06972: Magnesium and cobalt transport protein CorA	Clostridium bartlettii DSM 16795 Gene: CLOBAR_02030: Magnesium and cobalt transport protein CorA	Magnesium and cobalt transport protein CorA

CRON 3.
CBO2870	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	* Clostridium botulinum A str. ATCC 3502 Site: position = -231 score = 92.49 sequence = AAATAAACCTCGGTA... Gene: CBO2870: hypothetical protein	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein
mgtB	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502 Gene: CBO2869: Magnesium-translocating P-type ATPase (EC 3.6.3.2)	Clostridium novyi NT	* Clostridium perfringens ATCC 13124 Site: position = -484 score = 75.01 sequence = ATATTAATCGGTAGG... Gene: CPF_1153: Magnesium-translocating P-type ATPase (EC 3.6.3.2)	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Magnesium-translocating P-type ATPase (EC 3.6.3.2)

CRON 4.
rimM	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	* Clostridium acetobutylicum ATCC 824 Site: position = -450 score = 137.37 sequence = AAAGTTTTAGTTAGG... Gene: CAC0683: 16S rRNA processing protein RimM	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	16S rRNA processing protein RimM
mgtE	* Clostridium kluyveri DSM 555 Site: position = -386 score = 148.74 sequence = ATTTTTGTTATGTTA... Gene: CKL_3588: Magnesium transporter	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC0684: Magnesium transporter	* Clostridium botulinum A str. ATCC 3502 Site: position = -368 score = 149.13 sequence = AATAATGTACGTTAG... Gene: CBO0203: Magnesium transporter	Clostridium novyi NT Gene: NT01CX_1389: Magnesium transporter	Clostridium perfringens ATCC 13124 Gene: CPF_1530: Magnesium transporter	Clostridium difficile 630	2 Clostridium beijerincki NCIMB 8052* Gene: Cbei_0576: Magnesium transporter Site: position = -406 score = 153.89 sequence = AAAAACTTTGTTAGG... Gene: Cbei_3363: Magnesium transporter	Clostridium sp. OhILAs Gene: Clos_2073: Magnesium transporter	Clostridium sp. L2-50	Clostridium scindens ATCC 35704 Gene: CLOSCI_01715: Magnesium transporter	* Clostridium nexile DSM 1787 Site: position = -354 score = 76.83 sequence = ATAAGATTCGGTAGG... Gene: CLONEX_03217: Magnesium transporter	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_4053: Magnesium transporter	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Magnesium transporter
mntH	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	2 Clostridium acetobutylicum ATCC 824* Site: position = -356 score = 156.28 sequence = AATAATGTATTGTTA... Gene: CAC3329: Manganese transport protein MntH Gene: CAC0685: Manganese transport protein MntH	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_3364: Manganese transport protein MntH	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Manganese transport protein MntH