Regulog L10_leader - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | L10_leader |
| RFAM: | RF00557 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - L10_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 2 | 1 |
| Clostridium sp. SS2/1 | 2 | 1 |
| Clostridium cellulolyticum H10 | 2 | 1 |
| Clostridium phytofermentans ISDg | 2 | 1 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 2 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 2 | 1 |
| Clostridium novyi NT | 2 | 1 |
| Clostridium perfringens ATCC 13124 | 2 | 1 |
| Clostridium difficile 630 | 2 | 1 |
| Clostridium beijerincki NCIMB 8052 | 2 | 1 |
| Clostridium sp. OhILAs | 2 | 1 |
| Clostridium sp. L2-50 | 2 | 1 |
| Clostridium scindens ATCC 35704 | 2 | 1 |
| Clostridium nexile DSM 1787 | 2 | 1 |
| Clostridium leptum DSM 753 | 2 | 1 |
| Clostridium hiranonis DSM 13275 | 2 | 1 |
| Clostridium butyricum 5521 | ||
| Clostridium bolteae ATCC BAA-613 | 2 | 1 |
| Clostridium bartlettii DSM 16795 | 2 | 1 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| rplJ |
*
Clostridium kluyveri DSM 555 Site: position = -128 score = 55.82 sequence = TTGAATAAGTATATT... Gene: CKL_0214: LSU ribosomal protein L10p (P0) |
*
Clostridium sp. SS2/1 Site: position = -175 score = 79.53 sequence = TATGTAAAGTATTAC... Gene: CLOSS21_02766: LSU ribosomal protein L10p (P0) |
*
Clostridium cellulolyticum H10 Site: position = -193 score = 50.98 sequence = GGAAATTGAATATTG... Gene: Ccel_0310: LSU ribosomal protein L10p (P0) |
*
Clostridium phytofermentans ISDg Site: position = -180 score = 84.54 sequence = GCTTAATTCTCACAA... Gene: null: LSU ribosomal protein L10p (P0) |
*
Clostridium tetani E88 Site: position = -172 score = 70.45 sequence = TAGAATTAAAGAAAA... Gene: CTC02610: LSU ribosomal protein L10p (P0) |
*
Clostridium acetobutylicum ATCC 824 Site: position = -168 score = 59.8 sequence = TATTAAATATGTAAA... Gene: CAC3146: LSU ribosomal protein L10p (P0) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -161 score = 59.2 sequence = TGTAAAAATGAATAT... Gene: CBO3490: LSU ribosomal protein L10p (P0) |
*
Clostridium novyi NT Site: position = -149 score = 77.22 sequence = TTAAATAAGATAATA... Gene: NT01CX_1105: LSU ribosomal protein L10p (P0) |
*
Clostridium perfringens ATCC 13124 Site: position = -162 score = 74.52 sequence = AAAAAGTGAATGAAA... Gene: CPF_2724: LSU ribosomal protein L10p (P0) |
*
Clostridium difficile 630 Site: position = -170 score = 73.52 sequence = AAAAAAGAATAGATT... Gene: CD0063: LSU ribosomal protein L10p (P0) |
*
Clostridium beijerincki NCIMB 8052 Site: position = -158 score = 72.37 sequence = AAAAGAAAATATTTT... Gene: Cbei_0142: LSU ribosomal protein L10p (P0) |
*
Clostridium sp. OhILAs Site: position = -183 score = 50.12 sequence = TAAAAATGAATATTT... Gene: Clos_0482: LSU ribosomal protein L10p (P0) |
*
Clostridium sp. L2-50 Site: position = -192 score = 84.99 sequence = TATCCCCCGATGAAC... Gene: CLOL250_01641: LSU ribosomal protein L10p (P0) |
*
Clostridium scindens ATCC 35704 Site: position = -189 score = 73.24 sequence = TAATATTTCACGATG... Gene: CLOSCI_00863: LSU ribosomal protein L10p (P0) |
*
Clostridium nexile DSM 1787 Site: position = -183 score = 81.11 sequence = AACTTATATTAGAAA... Gene: CLONEX_01917: LSU ribosomal protein L10p (P0) |
*
Clostridium leptum DSM 753 Site: position = -129 score = 64.85 sequence = ATATTTGCTGATCTT... Gene: CLOLEP_02935: LSU ribosomal protein L10p (P0) |
*
Clostridium hiranonis DSM 13275 Site: position = -169 score = 80.88 sequence = AAAAAAGAATAGATT... Gene: CLOHIR_01568: LSU ribosomal protein L10p (P0) |
|
*
Clostridium bolteae ATCC BAA-613 Site: position = -334 score = 66.15 sequence = ATACCACAGTATTGA... Gene: CLOBOL_06829: LSU ribosomal protein L10p (P0) |
*
Clostridium bartlettii DSM 16795 Site: position = -161 score = 75.09 sequence = AAAAACGAATAGATT... Gene: CLOBAR_00085: LSU ribosomal protein L10p (P0) |
LSU ribosomal protein L10p (P0) |
| rplL |
Gene: CKL_0215: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CLOSS21_02767: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Ccel_0311: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: null: LSU ribosomal protein L7/L12 (P1/P2) |
|
Gene: CAC3145: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CBO3489: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: NT01CX_1106: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CPF_2723: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CD0064: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Cbei_0143: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Clos_0483: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CLOL250_01642: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CLOSCI_00862: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CLONEX_01916: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CLOLEP_02936: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CLOHIR_01569: LSU ribosomal protein L7/L12 (P1/P2) |
|
Gene: CLOBOL_06828: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CLOBAR_00086: LSU ribosomal protein L7/L12 (P1/P2) |
LSU ribosomal protein L7/L12 (P1/P2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |