Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Clostridium kluyveri DSM 555

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis 3 8
TF BirA Biotin Biotin biosynthesis 4 3
TF Cbei_4343 Multidrug resistance; Multidrug efflux 1 1
TF CcpA HPr, phosphocarrier protein Carbohydrate metabolism 45 16
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 3 1
TF HcpR Nitric oxide Nitrosative stress response 3 3
TF HrcA Heat shock Heat shock response 3 3
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 4 2
TF LexA DNA damage SOS response 3 2
TF NiaR Niacin NAD biosynthesis 3 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF Rex NADH Energy metabolism 8 3
TF YdfD/YisV Metabolite transport 1 1
TF YhcF Multidrug resistance; Multidrug efflux 2 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 7 5
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 9 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 4 2
RNA Glycine Glycine Glycine metabolism 4 5
RNA L10_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 2 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 5 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 1 1
RNA Purine Adenine; Guanine Purine metabolism 5 3
RNA PyrR PyrR Pyrimidine metabolism 5 3
RNA SAM S-adenosylmethionine Methionine biosynthesis 23 18
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 3 2
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 4 2
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 4 2
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 5 5
RNA T-box(Met) Met-tRNA Amino acid metabolism 1 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 5 3
RNA T-box(Val) Val-tRNA Amino acid metabolism 3 1
RNA THF Tetrahydrofolate Folate metabolism 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 7 5
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ydaO-yuaA Cell wall metabolism; Osmotic stress response 4 2
RNA ykkC-yxkD Multidrug resistance 2 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 2 1
RNA yybP-ykoY 3 2
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