Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CcpA in Clostridium kluyveri DSM 555

Properties
Regulator type: Transcription factor
TF locus tag: CKL_3751
Regulator family: LacI
Regulation mode: repressor (activator)
Biological process: Carbohydrate metabolism
Effector: HPr, phosphocarrier protein
Regulog: CcpA - Clostridia-1
Statistics of regulated genes:
- Genes 30
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 436 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -30
Score: 4.2
Sequence: AAGAAAAAGTTTTATG
Locus tag: CKL_2702
Name: clpB
Funciton: ATP-dependent chaperone ClpB
CKL_2702
clpB
ATP-dependent chaperone ClpB
Position: -205
Score: 4.2
Sequence: TTATAAAAATTTTAAA
Position: -177
Score: 4.2
Sequence: ATGAAAAAATATAAAA
Position: -142
Score: 4.2
Sequence: TAAAAAATGTTATAAT
Locus tag: CKL_0783
Name: CKL_0783
Funciton: Hypothetical protein
Locus tag: CKL_0784
Name: aroF
Funciton: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
Locus tag: CKL_0785
Name: tyrA
Funciton: Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)
Locus tag: CKL_0786
Name: aroB
Funciton: 3-dehydroquinate synthase (EC 4.2.3.4)
Locus tag: CKL_0787
Name: aroA
Funciton: 5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Locus tag: CKL_0788
Name: aroC
Funciton: Chorismate synthase (EC 4.2.3.5)
Locus tag: CKL_0789
Name: pheA
Funciton: Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) # AroHI/PheAIp/ACT domain
Locus tag: CKL_0790
Name: aroE
Funciton: Chorismate mutase I (EC 5.4.99.5) / Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)
Locus tag: CKL_0791
Name: aroK
Funciton: Shikimate kinase I (EC 2.7.1.71)
CKL_0783
CKL_0783
Hypothetical protein
CKL_0784
aroF
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54)
CKL_0785
tyrA
Prephenate and/or arogenate dehydrogenase (unknown specificity) (EC 1.3.1.12)(EC 1.3.1.43)
CKL_0786
aroB
3-dehydroquinate synthase (EC 4.2.3.4)
CKL_0787
aroA
5-enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
CKL_0788
aroC
Chorismate synthase (EC 4.2.3.5)
CKL_0789
pheA
Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) # AroHI/PheAIp/ACT domain
CKL_0790
aroE
Chorismate mutase I (EC 5.4.99.5) / Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25)
CKL_0791
aroK
Shikimate kinase I (EC 2.7.1.71)
Position: -77
Score: 4.1
Sequence: TTTAAAATTATTATAT
Locus tag: CKL_2172
Name: null
Funciton: Uncharacterized ABC transporter, ATP-binding protein
Locus tag: CKL_2171
Name: null
Funciton: Uncharacterized ABC transporter, ATP-binding and permease protein
CKL_2172
Uncharacterized ABC transporter, ATP-binding protein
CKL_2171
Uncharacterized ABC transporter, ATP-binding and permease protein
Position: -127
Score: 4.1
Sequence: ATAAAAAAAATAAAAT
Position: -107
Score: 4.3
Sequence: TTGAAATAATTTTAAT
Locus tag: CKL_0447
Name: pykA
Funciton: Pyruvate carboxyl transferase (EC 6.4.1.1)
CKL_0447
pykA
Pyruvate carboxyl transferase (EC 6.4.1.1)
Position: -195
Score: 4.1
Sequence: ATTATAATTTTTTAAT
Locus tag: CKL_3197
Name: ytxC
Funciton: Putative sporulation protein YtxC
CKL_3197
ytxC
Putative sporulation protein YtxC
Position: -174
Score: 4.6
Sequence: TTAAAAAAGTTTTAAT
Locus tag: CKL_0782
Name: yrvJ
Funciton: N-acetylmuramoyl-L-alanine amidase
CKL_0782
yrvJ
N-acetylmuramoyl-L-alanine amidase
Position: -55
Score: 4.4
Sequence: ATGTAAAAATTTATTT
Locus tag: CKL_2743
Name: livH
Funciton: High-affinity branched-chain amino acid transport system permease protein (TC 3.A.1.4.1)
Locus tag: CKL_2742
Name: livM
Funciton: Branched-chain amino acid transport system permease protein (TC 3.A.1.4.1)
Locus tag: CKL_2741
Name: livG
Funciton: Branched-chain amino acid transport ATP-binding protein (TC 3.A.1.4.1)
Locus tag: CKL_2740
Name: livF
Funciton: Branched-chain amino acid transport ATP-binding protein (TC 3.A.1.4.1)
Locus tag: CKL_2739
Name: livK
Funciton: Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)
CKL_2743
livH
High-affinity branched-chain amino acid transport system permease protein (TC 3.A.1.4.1)
CKL_2742
livM
Branched-chain amino acid transport system permease protein (TC 3.A.1.4.1)
CKL_2741
livG
Branched-chain amino acid transport ATP-binding protein (TC 3.A.1.4.1)
CKL_2740
livF
Branched-chain amino acid transport ATP-binding protein (TC 3.A.1.4.1)
CKL_2739
livK
Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)
Position: -327
Score: 4
Sequence: TAGAAAATATTTCAAA
Locus tag: CKL_1471
Name: kdpA
Funciton: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Locus tag: CKL_1472
Name: kdpB
Funciton: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)
CKL_1471
kdpA
Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)
CKL_1472
kdpB
Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)
Position: -154
Score: 4.2
Sequence: ATTTAAATAATTTATT
Locus tag: CKL_2732
Name: pbp
Funciton: Penicillin-binding protein
CKL_2732
pbp
Penicillin-binding protein
Position: -133
Score: 4.5
Sequence: TTAAAAAAGTTTAAAA
Locus tag: CKL_2838
Name: null
Funciton: Metal-dependent hydrolase of the beta-lactamase superfamily II
CKL_2838
Metal-dependent hydrolase of the beta-lactamase superfamily II
Position: -113
Score: 4
Sequence: TTTTAAAAAATATATT
Locus tag: CKL_1551
Name: serB
Funciton: Phosphoserine phosphatase (EC 3.1.3.3)
Locus tag: CKL_1552
Name: null
Funciton: Hypothetical protein
CKL_1551
serB
Phosphoserine phosphatase (EC 3.1.3.3)
CKL_1552
Hypothetical protein
Position: -217
Score: 4.3
Sequence: AAGTAAATGATATCAT
Locus tag: CKL_2031
Name: lrgA
Funciton: Antiholin-like protein LrgA
Locus tag: CKL_2030
Name: lrgB
Funciton: LrgA-associated membrane protein LrgB
CKL_2031
lrgA
Antiholin-like protein LrgA
CKL_2030
lrgB
LrgA-associated membrane protein LrgB
Position: -32
Score: 4
Sequence: AAGATAAAATTTATAA
Locus tag: CKL_1779
Name: null
Funciton: Predicted glycogen synthase (EC 2.4.1.11)
Locus tag: CKL_1778
Name: mpg
Funciton: Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13 ) / Phosphomannomutase (EC 5.4.2.8)
CKL_1779
Predicted glycogen synthase (EC 2.4.1.11)
CKL_1778
mpg
Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13 ) / Phosphomannomutase (EC 5.4.2.8)
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