Regulon of SAM in Clostridium kluyveri DSM 555
| Regulator type: | RNA regulatory element |
| Name: | SAM |
| RFAM: | RF00162 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Regulog: | SAM - Clostridiaceae |
| Under regulation: | |
| - Genes | 42 |
| - Operons | 18 |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - SAM
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -268
Score: 97 Sequence: CTTCTTATCCAGAGA...
Locus tag: CKL_0975
Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
|||
|
metY
|
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
|
||
|
Position: -175
Score: 99 Sequence: GCTCTTATCAAGAGA...
Locus tag: CKL_3674
Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6) |
|||
|
metK
|
S-adenosylmethionine synthetase (EC 2.5.1.6)
|
||
|
Position: -256
Score: 96.3 Sequence: TTTCTTATCAAGAGA...
Locus tag: CKL_1633
Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6) |
|||
|
metK
|
S-adenosylmethionine synthetase (EC 2.5.1.6)
|
||
|
Position: -307
Score: 85.8 Sequence: ACTTATTAAGAGAGG...
Locus tag: CKL_0822
Name: metN3 Funciton: Methionine ABC transporter ATP-binding protein
Locus tag: CKL_0823
Name: metP3 Funciton: Methionine ABC transporter permease protein
Locus tag: CKL_0824
Name: metQ3 Funciton: Methionine ABC transporter substrate-binding protein |
|||
|
metN3
|
Methionine ABC transporter ATP-binding protein
|
||
|
metP3
|
Methionine ABC transporter permease protein
|
||
|
metQ3
|
Methionine ABC transporter substrate-binding protein
|
||
|
Position: -330
Score: 71.5 Sequence: ATTCTTATCAAGAGA...
Locus tag: CKL_2782
Name: null Funciton: hypothetical protein
Locus tag: CKL_2781
Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: CKL_2780
Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
|||
|
hypothetical protein
|
|||
|
nifD
|
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
|
||
|
nifD
|
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
|
||
|
Position: -276
Score: 95.2 Sequence: TCTTATCAAGAGAGG...
Locus tag: CKL_1036
Name: nifB Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: CKL_1037
Name: tauC Funciton: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
Locus tag: CKL_1038
Name: tauA Funciton: Alkanesulfonates-binding protein
Locus tag: CKL_1039
Name: tauB Funciton: Taurine transport ATP-binding protein TauB
Locus tag: CKL_1040
Name: tauC1 Funciton: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
Locus tag: CKL_1041
Name: tauC Funciton: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
Locus tag: CKL_1042
Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: CKL_1043
Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: CKL_1044
Name: nifK Funciton: Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1) |
|||
|
nifB
|
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
|
||
|
tauC
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
|
||
|
tauA
|
Alkanesulfonates-binding protein
|
||
|
tauB
|
Taurine transport ATP-binding protein TauB
|
||
|
tauC1
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
|
||
|
tauC
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
|
||
|
nifD
|
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
|
||
|
nifD
|
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
|
||
|
nifK
|
Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1)
|
||
|
Position: -310
Score: 97.6 Sequence: TCTTATCAAGAGAGG...
Locus tag: CKL_1033
Name: nifH Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: CKL_1034
Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: CKL_1035
Name: nifK Funciton: Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1) |
|||
|
nifH
|
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
|
||
|
nifD
|
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
|
||
|
nifK
|
Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1)
|
||
|
Position: -244
Score: 100.2 Sequence: CTTCTTATCCAGAGT...
Locus tag: CKL_1307
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -388
Score: 101.2 Sequence: CTTCTTATCAAGAGA...
Locus tag: CKL_1803
Name: sbpA Funciton: Sulfate-binding protein Sbp
Locus tag: CKL_1802
Name: cysT Funciton: Sulfate transport system permease protein CysT
Locus tag: CKL_1801
Name: cysW Funciton: Sulfate transport system permease protein CysW
Locus tag: CKL_1800
Name: cysA Funciton: Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25)
Locus tag: CKL_1799
Name: cysC Funciton: Adenylylsulfate kinase (EC 2.7.1.25)
Locus tag: CKL_1798
Name: aprA Funciton: Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)
Locus tag: CKL_1797
Name: CKL_1797 Funciton: Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)
Locus tag: CKL_1796
Name: cysH Funciton: Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Locus tag: CKL_1795
Name: cysN Funciton: Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) |
|||
|
sbpA
|
Sulfate-binding protein Sbp
|
||
|
cysT
|
Sulfate transport system permease protein CysT
|
||
|
cysW
|
Sulfate transport system permease protein CysW
|
||
|
cysA
|
Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25)
|
||
|
cysC
|
Adenylylsulfate kinase (EC 2.7.1.25)
|
||
|
aprA
|
Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)
|
||
|
CKL_1797
|
Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)
|
||
|
cysH
|
Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
|
||
|
cysN
|
Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25)
|
||
|
Position: -415
Score: 91 Sequence: TCTTATCAAGAGCGG...
Locus tag: CKL_0525
Name: nifB Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN / Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: CKL_0526
Name: cysK Funciton: Cysteine synthase (EC 2.5.1.47) |
|||
|
nifB
|
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN / Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
|
||
|
cysK
|
Cysteine synthase (EC 2.5.1.47)
|
||
|
Position: -223
Score: 93.3 Sequence: GTTCTTATCAAGAGA...
Locus tag: CKL_3054
Name: CD2172 Funciton: Amino acid ABC transporter, ATP-binding protein |
|||
|
CD2172
|
Amino acid ABC transporter, ATP-binding protein
|
||
|
Position: -186
Score: 95.3 Sequence: GCTCTTATCACGAGA...
Locus tag: CKL_1794
Name: tlpB Funciton: Methyl-accepting chemotaxis protein tlpB |
|||
|
tlpB
|
Methyl-accepting chemotaxis protein tlpB
|
||
|
Position: -185
Score: 89.3 Sequence: CCTTATCAAGAGAAA...
Locus tag: CKL_0827
Name: null Funciton: hypothetical protein |
|||
|
hypothetical protein
|
|||
|
Position: -249
Score: 92.4 Sequence: TCTTATCAAGAGCGG...
Locus tag: CKL_1631
Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46) |
|||
|
metA
|
Homoserine O-succinyltransferase (EC 2.3.1.46)
|
||
|
Position: -306
Score: 92.5 Sequence: TTTCTTATCAAGAGT...
Locus tag: CKL_2180
Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
|||
|
metY
|
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
|
||
|
Position: -207
Score: 88.6 Sequence: ATTCTTATTTTGAGA...
Locus tag: CKL_3334
Name: COG2606 Funciton: YbaK family protein |
|||
|
COG2606
|
YbaK family protein
|
||
|
Position: -184
Score: 85.3 Sequence: ACTTATCAAGAGAGG...
Locus tag: CKL_0665
Name: metN Funciton: Methionine ABC transporter ATP-binding protein
Locus tag: CKL_0666
Name: metP Funciton: Methionine ABC transporter permease protein |
|||
|
metN
|
Methionine ABC transporter ATP-binding protein
|
||
|
metP
|
Methionine ABC transporter permease protein
|
||
|
Position: -184
Score: 85.9 Sequence: AGCTTTATCAAGAGC...
Locus tag: CKL_2913
Name: metQ Funciton: Methionine ABC transporter substrate-binding protein |
|||
|
metQ
|
Methionine ABC transporter substrate-binding protein
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |