Regulon of SAM in Clostridium kluyveri DSM 555

Properties
Regulator type:	RNA regulatory element
Name:	SAM
RFAM:	RF00162
Regulation mode:
Biological process:	Methionine biosynthesis
Effector:	S-adenosylmethionine
Regulog:	SAM - Clostridiaceae
Under regulation:
- Genes	42
- Operons	18

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - SAM
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -268 Score: 97 Sequence: CTTCTTATCCAGAGA... Locus tag: CKL_0975 Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
	CKL_0975	metY	O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Position: -175 Score: 99 Sequence: GCTCTTATCAAGAGA... Locus tag: CKL_3674 Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
	CKL_3674	metK	S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -256 Score: 96.3 Sequence: TTTCTTATCAAGAGA... Locus tag: CKL_1633 Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
	CKL_1633	metK	S-adenosylmethionine synthetase (EC 2.5.1.6)
Position: -307 Score: 85.8 Sequence: ACTTATTAAGAGAGG... Locus tag: CKL_0822 Name: metN3 Funciton: Methionine ABC transporter ATP-binding protein Locus tag: CKL_0823 Name: metP3 Funciton: Methionine ABC transporter permease protein Locus tag: CKL_0824 Name: metQ3 Funciton: Methionine ABC transporter substrate-binding protein
	CKL_0822	metN3	Methionine ABC transporter ATP-binding protein
	CKL_0823	metP3	Methionine ABC transporter permease protein
	CKL_0824	metQ3	Methionine ABC transporter substrate-binding protein
Position: -330 Score: 71.5 Sequence: ATTCTTATCAAGAGA... Locus tag: CKL_2782 Name: null Funciton: hypothetical protein Locus tag: CKL_2781 Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) Locus tag: CKL_2780 Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
	CKL_2782		hypothetical protein
	CKL_2781	nifD	Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
	CKL_2780	nifD	Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Position: -276 Score: 95.2 Sequence: TCTTATCAAGAGAGG... Locus tag: CKL_1036 Name: nifB Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB Locus tag: CKL_1037 Name: tauC Funciton: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Locus tag: CKL_1038 Name: tauA Funciton: Alkanesulfonates-binding protein Locus tag: CKL_1039 Name: tauB Funciton: Taurine transport ATP-binding protein TauB Locus tag: CKL_1040 Name: tauC1 Funciton: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Locus tag: CKL_1041 Name: tauC Funciton: ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Locus tag: CKL_1042 Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) Locus tag: CKL_1043 Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) Locus tag: CKL_1044 Name: nifK Funciton: Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1)
	CKL_1036	nifB	Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
	CKL_1037	tauC	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
	CKL_1038	tauA	Alkanesulfonates-binding protein
	CKL_1039	tauB	Taurine transport ATP-binding protein TauB
	CKL_1040	tauC1	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
	CKL_1041	tauC	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component
	CKL_1042	nifD	Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
	CKL_1043	nifD	Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
	CKL_1044	nifK	Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1)
Position: -310 Score: 97.6 Sequence: TCTTATCAAGAGAGG... Locus tag: CKL_1033 Name: nifH Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH Locus tag: CKL_1034 Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) Locus tag: CKL_1035 Name: nifK Funciton: Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1)
	CKL_1033	nifH	Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
	CKL_1034	nifD	Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
	CKL_1035	nifK	Nitrogenase molybdenum-iron protein beta chain (EC 1.18.6.1)
Position: -244 Score: 100.2 Sequence: CTTCTTATCCAGAGT... Locus tag: CKL_1307 Name: null Funciton: hypothetical protein
	CKL_1307		hypothetical protein
Position: -388 Score: 101.2 Sequence: CTTCTTATCAAGAGA... Locus tag: CKL_1803 Name: sbpA Funciton: Sulfate-binding protein Sbp Locus tag: CKL_1802 Name: cysT Funciton: Sulfate transport system permease protein CysT Locus tag: CKL_1801 Name: cysW Funciton: Sulfate transport system permease protein CysW Locus tag: CKL_1800 Name: cysA Funciton: Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) Locus tag: CKL_1799 Name: cysC Funciton: Adenylylsulfate kinase (EC 2.7.1.25) Locus tag: CKL_1798 Name: aprA Funciton: Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2) Locus tag: CKL_1797 Name: CKL_1797 Funciton: Adenylylsulfate reductase beta-subunit (EC 1.8.99.2) Locus tag: CKL_1796 Name: cysH Funciton: Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) Locus tag: CKL_1795 Name: cysN Funciton: Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25)
	CKL_1803	sbpA	Sulfate-binding protein Sbp
	CKL_1802	cysT	Sulfate transport system permease protein CysT
	CKL_1801	cysW	Sulfate transport system permease protein CysW
	CKL_1800	cysA	Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25)
	CKL_1799	cysC	Adenylylsulfate kinase (EC 2.7.1.25)
	CKL_1798	aprA	Adenylylsulfate reductase alpha-subunit (EC 1.8.99.2)
	CKL_1797	CKL_1797	Adenylylsulfate reductase beta-subunit (EC 1.8.99.2)
	CKL_1796	cysH	Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
	CKL_1795	cysN	Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25)
Position: -415 Score: 91 Sequence: TCTTATCAAGAGCGG... Locus tag: CKL_0525 Name: nifB Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN / Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB Locus tag: CKL_0526 Name: cysK Funciton: Cysteine synthase (EC 2.5.1.47)
	CKL_0525	nifB	Nitrogenase FeMo-cofactor scaffold and assembly protein NifN / Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
	CKL_0526	cysK	Cysteine synthase (EC 2.5.1.47)
Position: -223 Score: 93.3 Sequence: GTTCTTATCAAGAGA... Locus tag: CKL_3054 Name: CD2172 Funciton: Amino acid ABC transporter, ATP-binding protein
	CKL_3054	CD2172	Amino acid ABC transporter, ATP-binding protein
Position: -186 Score: 95.3 Sequence: GCTCTTATCACGAGA... Locus tag: CKL_1794 Name: tlpB Funciton: Methyl-accepting chemotaxis protein tlpB
	CKL_1794	tlpB	Methyl-accepting chemotaxis protein tlpB
Position: -185 Score: 89.3 Sequence: CCTTATCAAGAGAAA... Locus tag: CKL_0827 Name: null Funciton: hypothetical protein
	CKL_0827		hypothetical protein
Position: -249 Score: 92.4 Sequence: TCTTATCAAGAGCGG... Locus tag: CKL_1631 Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
	CKL_1631	metA	Homoserine O-succinyltransferase (EC 2.3.1.46)
Position: -306 Score: 92.5 Sequence: TTTCTTATCAAGAGT... Locus tag: CKL_2180 Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
	CKL_2180	metY	O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
Position: -207 Score: 88.6 Sequence: ATTCTTATTTTGAGA... Locus tag: CKL_3334 Name: COG2606 Funciton: YbaK family protein
	CKL_3334	COG2606	YbaK family protein
Position: -184 Score: 85.3 Sequence: ACTTATCAAGAGAGG... Locus tag: CKL_0665 Name: metN Funciton: Methionine ABC transporter ATP-binding protein Locus tag: CKL_0666 Name: metP Funciton: Methionine ABC transporter permease protein
	CKL_0665	metN	Methionine ABC transporter ATP-binding protein
	CKL_0666	metP	Methionine ABC transporter permease protein
Position: -184 Score: 85.9 Sequence: AGCTTTATCAAGAGC... Locus tag: CKL_2913 Name: metQ Funciton: Methionine ABC transporter substrate-binding protein
	CKL_2913	metQ	Methionine ABC transporter substrate-binding protein

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of SAM in Clostridium kluyveri DSM 555

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --