# RNA - THF
>CKL_1477(folT) Score=62.6 Pos=-256 [Clostridium kluyveri DSM 555]
GCAGAGTAAATATTATGCGTAAAGTGTTAGAGAATGGGAGGTTGTCTCTAAACGAAAAGCTTAAATACTTGTTATATAAGATTTAAAGCTTACGATATAATATTGCTTCCGCTGTTAT
>CKL_3856(folT) Score=82.4 Pos=-262 [Clostridium kluyveri DSM 555]
GCAGAGTAGAACGTTGTGCGTAAATCATTGATTTGCAGTGCCTTCTGAACGGGGAGTTGTCAGAGGGACGAAAAGCCTTTTAGGGCTTACGGTACAAGGTTCGCATCCCGCTGCTGC
# TF - ArgR: CKL_1234
>CKL_1553(argC) Score=4.7 Pos=-257 [Clostridium kluyveri DSM 555]
TTGTACATTTATAAAA
>CKL_1553(argC) Score=4.6 Pos=-224 [Clostridium kluyveri DSM 555]
TTGTATATTTATAATG
>CKL_1553(argC) Score=4.8 Pos=-123 [Clostridium kluyveri DSM 555]
ATTAATTTTTATAAAA
>CKL_1553(argC) Score=4.8 Pos=-102 [Clostridium kluyveri DSM 555]
TTGCATATTTATTTAT
>CKL_2377(artP2) Score=4.9 Pos=-222 [Clostridium kluyveri DSM 555]
ATGTATATGTATAAAT
>CKL_2377(artP2) Score=4.6 Pos=-122 [Clostridium kluyveri DSM 555]
ATGTATAATTATAAGG
>CKL_0978(artP2) Score=4.8 Pos=-88 [Clostridium kluyveri DSM 555]
TTGCATAATTATAATA
>CKL_0978(artP2) Score=5.1 Pos=-68 [Clostridium kluyveri DSM 555]
ATGTATAATTATTTAT
# TF - LexA: CKL_1579
>CKL_1445(recA) Score=5.3 Pos=-36 [Clostridium kluyveri DSM 555]
TAGAACATATGTTCTT
>CKL_1579(lexA) Score=4.8 Pos=-72 [Clostridium kluyveri DSM 555]
TAGAACATAAGTTTGC
# TF - HrcA: CKL_0900
>CKL_0900(hrcA) Score=7.6 Pos=-42 [Clostridium kluyveri DSM 555]
TTAGCACTCAATGCTAGCGAGTGCTAA
>CKL_0463(groES) Score=7.9 Pos=-84 [Clostridium kluyveri DSM 555]
TTAGCACTCATAATTAATGAGTGCTAA
>CKL_2212(htpG) Score=7.1 Pos=-202 [Clostridium kluyveri DSM 555]
TTAGCACTCAAGTATTATAAGTGCTAA
# RNA - Cobalamin
>CKL_3429(cbiM) Score=89.1 Pos=-345 [Clostridium kluyveri DSM 555]
AATTTAATAATAAAATATAGGTTTAATCAATTAATTGATTAATTAAAAGGGAATCAGGTGAAATTCCTGGACTATCCCGTAGCTGTATTAGATGAATTTAAATACATTAGAAACCACTTGGAAACAGGGAAGGGGTATTTAAGTGATGATTCTTGAGTCAGAAGACCTGCCTATATTTTTGACTATGGT
# RNA - FMN
>CKL_2169(ribD) Score=103.1 Pos=-394 [Clostridium kluyveri DSM 555]
AATATGCTTTCGGGGCAGGGTGAAATTCCCGATCGGCGGTATAGTCCGCGAGCTGATTATCAGCAGGAACTGGTTGGATTCCAGTACCGACAGTAAAGTCTGGATGGAGAAAGTGGAA
>CKL_3611(ribU) Score=122.8 Pos=-359 [Clostridium kluyveri DSM 555]
ATATAATCTTCAGGGCGGGGTGAAATTCCCCACCGGCGGTATAGCCCGCGAGCTGCGTGTTCAGCATGATTCAGTGAAATTCTGAAGCCGACAGTAAAGTCTGGATGGGAGAAGATAGAA
# RNA - GEMM_RNA_motif
>CKL_3514 Score=70.9 Pos=-242 [Clostridium kluyveri DSM 555]
ATATTGATAATAGCACACTTATTGAAAAATAAGGTCGCAAAGCTATGGGTCTAAAGAAAAGTTATTTTTCTATGATTGCCAGGTTGCCAAA
>CKL_2324(fabH) Score=69.9 Pos=-207 [Clostridium kluyveri DSM 555]
ATTGATAATAGCACACTTATCGAAAGGTAGGGTCGCAAAGCTATGGGTCTTAAGAAAATTATTTTTCTATGATTGCCAGGTTGCCAAAGT
# RNA - Glycine
>CKL_1774(gcvT) Score=34.1 Pos=-128 [Clostridium kluyveri DSM 555]
TTGACGAAACTCTGGAAAGTAGCAATACACCGAAGAAGCTAAAATCTTTCAGGTATAAAAGACAGAGCGCATAAA
>CKL_0776(gcvR) Score=61.4 Pos=-229 [Clostridium kluyveri DSM 555]
TGGACGAACCTCTGGAGAGACTCTTTAAGAGCACCGAAGGGGAAAGCCAAAATTTTGGTGAAACTCTCAGGTAAAAAGGACAGGGGATTTCAT
>CKL_1774(gcvT) Score=55.8 Pos=-213 [Clostridium kluyveri DSM 555]
AATGATAAATTTAGGAGAGACTGCCAGAAATATGGCGGCACCGAAGGGGAAGCTGCAGTAAACTCTCAGGTAAAAGGACTGAATTT
>CKL_3526(aroP) Score=51.8 Pos=-373 [Clostridium kluyveri DSM 555]
ATCCTTGGAGAGACTCTTAATGAGCACCGAAGGAGAAAGTCGAAGGGCGAAACTCTCAGGTAAAAGGACAGGGA
>CKL_3526(aroP) Score=38.7 Pos=-469 [Clostridium kluyveri DSM 555]
GATGAAAATAGTGGGAGAGTTATGGCAATAGCCATTCACCGAAGAAGTAAATCTTTCAGGTACCTATTTAATTTAGAGATGACCGCTATTGGATG
# RNA - L10_leader
>CKL_0214(rplJ) Score=55.8 Pos=-128 [Clostridium kluyveri DSM 555]
TTGAATAAGTATATTTTCCTTAGACAATAGGTGCAAAATGCGTAACGGTAAAACCAACCTATCCAGGATTCCAATATAAAGTAAAGGTGGTCTCTCTGTGTCTATAGGGAGGCTTTTGATTTTTATATAT
# RNA - L19_leader
>CKL_1406(rplS) Score=22.1 Pos=-68 [Clostridium kluyveri DSM 555]
GGGCGTTCCTCTGTCTATGAATATTACAAGATAAGAACGTTTAAT
# RNA - L20_leader
>CKL_3195(rpmI) Score=58.8 Pos=-190 [Clostridium kluyveri DSM 555]
AAACGTTAAGAAGAAACAGCCGTTTCTCACCTTACAGCAAAGCTAGTAAGGTTGTGTTTATAAGAATTTTTTATTATAAAGATTCTTTGCTATGGGATGTATTTAAGAGCGGCTTTAGGCCGCTTTTTTTATGTGTA
# RNA - L21_leader
>CKL_0879(rplU) Score=26.8 Pos=-95 [Clostridium kluyveri DSM 555]
GACAGCTGTAGACCGCTCAAAAAAGGTTATGTAAATTATTTGGAAAGTTTTTCTAATATACCTTTTAGGCGAGACTGGATTGAGGAGG
# RNA - Lysine
>CKL_1545(lysP) Score=105.9 Pos=-295 [Clostridium kluyveri DSM 555]
TTTAAGATAGAGGTGCAAAATTTATAAGTAAAGTTTTGGAGGCAAGCACAATGAAGGGACTTAAAAGGAAATTTTGCCGAAGTGTTCAACAGATGCTTTGATGTTGAATTAACTGGTTTTGTATAAAATATATACAAGACTGTCACAAATATAATTTGTGAAGAGCTATCATTCATTG
>CKL_0607(lysC) Score=97.2 Pos=-401 [Clostridium kluyveri DSM 555]
CCTAGGGTAGAGGTGCTGTAATTAATAGTATTTATTTTTAATCGGCAGATGTTTGAGGAATAAAGAAAGGAATTACAGCCGAAAAGTTAGTTTGGCGAACCTAACTTTGGCTTTGCATATAATATGTGTAAGGCTGTCACTGAGATATACTTGGTGGAGAGCTACAAGGTACAC
# RNA - PreQ1
>CKL_0422(COG1924) Score=25.9 Pos=-138 [Clostridium kluyveri DSM 555]
CAAGACAGTTCGTGACCATCCTGTCTATAAACAAAACTAGGGGAATCT
# RNA - Purine
>CKL_2693(pbuO) Score=72.2 Pos=-178 [Clostridium kluyveri DSM 555]
CTAAATTTTTCGATAAATCATTCGTATAATCTTGATAATATGGTTCAAGAGTATCTACCAAGGCACCAAAAATCCTTGACTATGAGTGAATCACGGGAAAGT
>CKL_2689(purE) Score=70.9 Pos=-304 [Clostridium kluyveri DSM 555]
TATCATAAACAAATAAAGTATCCATATAATCCTAATAATGTGGTTTAGGAGTTTCTACAGGAAGCCGTAAATTTCCCGTCTATGGATGAATTCCTTTAAAGC
>CKL_0465(guaB) Score=21.6 Pos=-197 [Clostridium kluyveri DSM 555]
AATAAGTTCTTTATTCAATTCATATATCCTGAATATGGTAGGGAAATGTCTGCAGGAAACCATAAATTTCTGAATGTTATTGGAATTATTATGGTAAA
# RNA - PyrR
>CKL_3361(pyrB) Score=45.5 Pos=-151 [Clostridium kluyveri DSM 555]
CTGAACCTTTAAGACTAGTTCCGTGAAGCTAGGAAGGCATGGTAAAAATTATGATGTTATTATATTTATGGTATAATAATGCCTTCCAAACAGGGAGGCATTTTTTTAA
>CKL_1201(pyrR) Score=42.7 Pos=-119 [Clostridium kluyveri DSM 555]
AATATCCTTTAAAATGATCCCGTGAGGTCACTAAGGCAATTAAAATAGATACTTCTATGCCCTCTCGTTTGGAGAAGGGCTTTTTTATT
>CKL_0649(carA) Score=31.5 Pos=-216 [Clostridium kluyveri DSM 555]
TACACTTTAAATTGGTCCTGTGAGGCCAGAAAGGGGTATATATCTATATGTATGGGTATAGTTGTTTGTTA
# RNA - SAM
>CKL_1803(sbpA) Score=101.2 Pos=-388 [Clostridium kluyveri DSM 555]
CTTCTTATCAAGAGAGGTGGAGGGACTGGCCCTATGATGCCCGGCAACCTGAATGTATTTACATTCAATGGTGCTAATTCCAGCAGGTAATATAACCTGAAAGATGAGAG
>CKL_1307 Score=100.2 Pos=-244 [Clostridium kluyveri DSM 555]
CTTCTTATCCAGAGTGGCGAAGGGACTGGCCCTATGATGCCCAGCAACCTGAATGATTTTTCATCATTCAACGGTGCTAATTCCAGCAGGTATAAAACCTGAAAGATGAGAA
>CKL_1033(nifH) Score=97.6 Pos=-310 [Clostridium kluyveri DSM 555]
TCTTATCAAGAGAGGCGGAGGGACTGGCCCTATGATGCCCGGCAACCTGAATGTTATTTGTTCAATGGTGCCAATTCCTGCGGGGTAACCTGAAAGATGAGATAT
>CKL_1036(nifB) Score=95.2 Pos=-276 [Clostridium kluyveri DSM 555]
TCTTATCAAGAGAGGCGGAGGGACTGGCCCTATGATGCCCGGCAACCTGAATGTTATTTGTTCAATGGTGCTAATTCCTGCGGGGTAACCTGAAAGATGAGATAT
>CKL_2782 Score=71.5 Pos=-330 [Clostridium kluyveri DSM 555]
ATTCTTATCAAGAGAAACTAAGGGGCTGGCCCGATAAAGTTTCAGCAACCCGTATGTTTTATTTACATGCAAAGTGCTAAATTCTGCAGATATATTTCTGAAAGATGAGGG
>CKL_0822(metN3) Score=85.8 Pos=-307 [Clostridium kluyveri DSM 555]
ACTTATTAAGAGAGGCGGAGGGAAAGGCCCTATGAAGTCCGGCAACCAGCATTATGTAATGTATTGGTGCTAAATCCTGCAGCATTGTAGCTGAAAGATGAGGTAA
>CKL_1794(tlpB) Score=95.3 Pos=-186 [Clostridium kluyveri DSM 555]
GCTCTTATCACGAGAGGTGGAGGGACTGGCCCTGTGAAGCCCGGCAACAGCTAGATATTCTAGAAATGTGCTAAATCCTGAAGGATATTTCCTTAAAGATGAGAG
>CKL_3054(CD2172) Score=93.3 Pos=-223 [Clostridium kluyveri DSM 555]
GTTCTTATCAAGAGAGGCGGAGGGACTGGCCCTATGAAACCCAACAACCGGCATTTATTTCAATATGTATCGGTGTTAATTCCTGCAGAGTTAATTTATACTCTGAAAGATGAGAA
>CKL_0525(nifB) Score=91 Pos=-415 [Clostridium kluyveri DSM 555]
TCTTATCAAGAGCGGCGGAGGGATAGGCCCTATGAAGTCCGACAACCGACATTTTGTGCATCGGTGTCAATTCCTACAGAGTGTGTTAATACTCTGAAAGATAAGAAAA
>CKL_0827 Score=89.3 Pos=-185 [Clostridium kluyveri DSM 555]
CCTTATCAAGAGAAACTTAGGGAATGGCCCGATGAAGTTTCAGCAACCACATTTTAATTTTATGTAAGGTGCTAAGTCCATCAGAACATAGTTCTGGAAGATGAGGTAA
>CKL_1631(metA) Score=92.4 Pos=-249 [Clostridium kluyveri DSM 555]
TCTTATCAAGAGCGGTGGAGGGACTGGCCCTATGAAACCCGACAACCAACATTTTATTAAAATGTATGGTGTTAATTCCAGCAGATTATTTCTGAGAGATAAGGAAA
>CKL_2180(metY) Score=92.5 Pos=-306 [Clostridium kluyveri DSM 555]
TTTCTTATCAAGAGTAGTGGAGGGACTGGTCCTATGATACTCGGCAACCTGAATATTTTTATATATTCAATGGTGCTAATTCCAGCAGGTTAAACCTGAAAGATGAGAG
>CKL_3334(COG2606) Score=88.6 Pos=-207 [Clostridium kluyveri DSM 555]
ATTCTTATTTTGAGAGACGGAGGGACTGGCCCTATGATGTCCGGCAACCTGAATATTTAAGGTGCTAATTCCAGCAGGTATTACCTGAGAGATAAGAA
>CKL_0665(metN) Score=85.3 Pos=-184 [Clostridium kluyveri DSM 555]
ACTTATCAAGAGAGGTGGAGGGAACAGGCCCATTGAAGCCCGGCAACCAATACGTTGTATAATGGTGCCAAATCCTGCAGCGAAGGCTGAAAGATGAGAGAA
>CKL_2913(metQ) Score=85.9 Pos=-184 [Clostridium kluyveri DSM 555]
AGCTTTATCAAGAGCGGTGGAGGGACTGGCCCTATGAAGCCCAGCAACCAGTATTGTTTTTTAATACATTGGTGCTAATTCCTACAGCTTAAGCTGAAAGATAGGGG
>CKL_3674(metK) Score=99 Pos=-175 [Clostridium kluyveri DSM 555]
GCTCTTATCAAGAGAGGTGGAGGGAAAAGGCCCTGTGAAGCCCGGCAACCAGTGCTTTAATCATTAAGGTGCCAATTCCAGCAGTTTTAAAGGCTGCAAGATAAGAG
>CKL_1633(metK) Score=96.3 Pos=-256 [Clostridium kluyveri DSM 555]
TTTCTTATCAAGAGAGACGGAGGGACTGGCCCTATGATGTCCGGCAACCAGAAGATTTTTATTTCATGGTGCTAATTCCAGCAGGTATTAATATGAAAAGCCTGATAGATAAGAG
>CKL_0975(metY) Score=97 Pos=-268 [Clostridium kluyveri DSM 555]
CTTCTTATCCAGAGAGGCAGAGGGACTGGCCCTATGATGCCCGGCAACCTGAATGATTTTTTATTGTTCAACGGTGCTAATTCCAGCAGGTGTGAAACCTGGAAGATGAGAA
# RNA - T-box(Ala)
>CKL_1324(alaS) Score=86.4 Pos=-250 [Clostridium kluyveri DSM 555]
ATGTGGCAGTGAATAGAAGAAGTAAATATATTCTTATATGTAAAGAGAGGAAGTAGAGGGTGTAAAGCTTCTCATATGAGGTTTATTGAAGGCTGTCTAGGAGCCTATTATGGTGTTTGAGAGATATGGATTTTATAATTTTAAATCTATATAATTAGGGTGGTACCGCGAAAAACTTTCGTCCCTTTTAT
# RNA - T-box(Asn)
>CKL_2310(asnB) Score=83.1 Pos=-428 [Clostridium kluyveri DSM 555]
GAAAAGCTATGATGGAGACAAGTAGGAAAAATATTCCACCAACAGTGAACTGGGGACAGTGTGAACCCAGGAGGCAGGATTTTTTTGAATAACACTCCGAAGTTGCAAACCGAAATATTTGTGTATTTAATTTAAACCTCTTAAAGCAGGTTCAAATAAAGTAGGAGCGTCGTATTCCATGCGTTATTTGGATACCAGTATTAGCTGGAAAGAGACCAATTATATTATGGTAAATTAGGTGGCACCACGGATAAGCGTCAATTCGTCCTATTATT
>CKL_0118(asnS) Score=101.7 Pos=-295 [Clostridium kluyveri DSM 555]
ACTAAAAACTATGATGAGAAGAGTAAATATAGGAACTTTCTAAAGCGAATTGGTTATGGTGAAAGTCCAATGTAAGTCTATATTGAAGAACATCTCGAAGTTTCTAACCGAAACCACTATGGAATTAGGCTTAGAGGTATTCAACACCTTAAAATTGAAGGATAAGGTATTTATCTTATCCTAAGAGCTGGTCATATTTATGACAAATTGGGTGGTACCGCGAATTAAGTCTTTCGTCCCTTTA
# RNA - T-box(Cys)
>CKL_1001(ubiG) Score=84 Pos=-370 [Clostridium kluyveri DSM 555]
TAATTGCGATGATGAGAAGAGTAAATTACACAAAACTACAAGAGAGAATTCCCCTTGGGTGTAAGGGAGTTTTGGTGGGAGGTAATTGAAGTGCATCTTTGAGCACTGAGTTGAATCTTAGTAGATTTCAGCGTGTACGTACGTTAAAACGTTGAGGTATGATTGTACCAATAAAGAGTTTTCACATGTAAACTTGTATTTATATAGTTTTTATAAAGTTTATATGGGATAAACAGAGTGGAACCGCGGAAGTAACCTTCTGCCTCTGTATA
>CKL_3413(cysK) Score=115.1 Pos=-330 [Clostridium kluyveri DSM 555]
CAGAAATACTTTGAAAAAGAAAAGTAGTTTAAATAAAGTTTCACAGAGAGGAAGCTGTAGGCTGAAAGGCTTCTAAATGGAATTTAAATGAAGTGCTCTTTGGAGTTATTGGCCGAACTGATAGTAGGTTGTATCGGGTTCACCCGTTATAGTGATAGAACATAGTGTTGTGTTTGATGAGTGAGGTCAAAAGATCTAAAAAGAGTGGAACCACGGAGTAGTACTTCGTCTCTATA
# RNA - T-box(Gly)
>CKL_0180(glyS) Score=73.5 Pos=-239 [Clostridium kluyveri DSM 555]
AGGTTGCTTTGATAAAGGATAGTAACAATTTAAGTCTCTAGGTGGAAAGAGAAGTTGTGGATGGTGTGAACAACTGAGATTTTATTGTGAAGGAACTTTGGAGTTATATATTTAAAAGATGAGCTTGTGCTAAAAAGGGTGGAACCGCGGATATGAAATTCGTCCCTTGAAG
# RNA - T-box(Ile)
>CKL_0426(ilvA) Score=99.1 Pos=-373 [Clostridium kluyveri DSM 555]
ATAAAACTAAGATGGAGAGAAAAATATTTGACCTATTAACTTCAGAGAGCCAACAGATGGTGAAAGTTGGTGTTAATATAAATATATAATAATCACTCCGGAGTTTCCAAGTAGAAAGACTTTTGTCTAGTAAACGAGGACGTCTACCAGCGGTATTTGGTTAGGGTTATAGTGGATATTTGTATCTAGTTATTTGAAGCTGACCTGAAAAATGAGTGGCAGTTAGGTATCTAACTGCAAATAAGGTGGTATCACGGAATGTTAATCTTTCGTCCTTATAAG
>CKL_3752(ileS) Score=94.3 Pos=-372 [Clostridium kluyveri DSM 555]
TTTAAAAACTTTGAACAGGAAAAGTATTTGGGTTTATATCATTTACAGAGAGCGGCCAGTGGTGAGAATCCGTAGGGTAACTTAGAGAAAATCACCTGGGAGTTTGAAAATTGAAAAGTATTTAACTATCTGAGTAAATTTTTACGTAATTCTGCGTTATAGAATACCATGTTAGTGTTCCAGGATTATCATAGGTGGTATAGCGAATTTAACTTCGTCCTATTT
# RNA - T-box(Leu)
>CKL_1089(ilvC) Score=104.8 Pos=-253 [Clostridium kluyveri DSM 555]
TAAAAACTGAGACAGGGATCAAGTAGATATGATTAACATTTTAAAGAGAGTGGTGGAAGCTGGGAATCCATAAATGTTACATGTTGAAACTCCCCCTGGAGTTGTAAGCTGAACTTATAGTAAGCTGTGCCGGTAGAAGCCGTTATAAAATATGAGTAACAAATTTGGGTGGTACCGCGGTAGACTTTCGCCCCAGGCAG
>CKL_3605(leuS) Score=118.8 Pos=-371 [Clostridium kluyveri DSM 555]
ACTTAGCTTTGAAGAAGGAATAGTAGTATTTATATCACCAAAGAGAACTGTTGCAGGGTGAAAAACAGCGTGAATAGAATATGAACTCACCTTAAGAGCTTTATCTGAAAAAATCAGATACGGTAAAAACCGTTATTTATTTTGAGTGAAATCAATTTTATTGATTTAATTAGAGTGGTACCGCGGAAAGTAGTCTTTTCGTCTCTTACAA
>CKL_2160(leuA2) Score=112.6 Pos=-244 [Clostridium kluyveri DSM 555]
TGTAAAAACTATGATAGGGAATAGTAAACATGTCAATGGATTTAAAAGAGAGTGGGAATAGGTGAAAACCCATAAATCATGCAGGTTGAACTCGCCCTGGAGTTATAAGCTGAAATTTTAGTAGGCTCTATCGGTTTACGCCGTTATTTGATTGAGAAAAAATTTGGGTGGCACCGCGACAGACTTCTCGCCCCATGG
>CKL_1618(ilvB) Score=103 Pos=-306 [Clostridium kluyveri DSM 555]
TATAAAAGCTATGATAGGGGCAAGTAGGTTTATAAGTATTTTAAAGAGAGTGGCAATTGGTGAAAAGCCATAGATACTTTATACTGAAACTCACCCTTAAGCTGTAGACCGAAATTTAGTAAGTCGTGCCGGCATATGTCGTTATTTAATTGAGTAAAATTTGGGTGGTACCGCGGACAGACTTCTCGCCCCATGA
>CKL_0047(leuA1) Score=57.4 Pos=-332 [Clostridium kluyveri DSM 555]
TAAAGGATATGAAAAGGAATAGTACTTATAGTCTAAATTTTAGAAAGCTGTTGGCTGATGTGAAACAGTATGAGGAATATATGGAACTCACCTTGGAAACTTCTATTTAAAATTCAGAACTAGGCTATATGCGACTTCTGAAAAGTAGATATAGACAGAAACCCTCTGTTATAAGGGAAAGACATAAA
# RNA - T-box(Met)
>CKL_3766(metS) Score=91.1 Pos=-316 [Clostridium kluyveri DSM 555]
GTTAAATACTATGAAGGAAAGAGTAATAAATTGGTTTTGTTCAAAGAGAGCCGACAATTTGGTGAAAGTCGGAAACAAAATGATTTATGAATATGGCTCTGGAGTATACCATTTGAAATAGTAGAATTAGTAATTAGGATGGTACGGCAGCAACCGTTATATTGAAAAGTAATGTTAGTTACTTATAGAGGTCTTTATTGTGAGATAAAGATGAAATAGAGTGGTAAAGCGTATTTTATGCCTCTATA
# RNA - T-box(Phe)
>CKL_3192(pheS) Score=104.5 Pos=-314 [Clostridium kluyveri DSM 555]
TTAGAATACTGTGAAAGAGAGAGTAGATATACGAAAGTTTTTTAGAGAGAAAAAGTTATGGCTGAGAGCTTTTTTAAAATGGAAGTATATTGAAGTTCGCTCTGGAGTACTTGCTGTGAAATTAAAGTATCTTTCAATCAATAATAAGCTAAAGATATCAAGTAGCAGCTAAGCGGGAAATACCGATAAATATACAAAGAGGATATTATTTTTAATGTCAATTTGGGTGGTAACGCGGATTAGTTCGTCCCTTAG
# RNA - T-box(Pro)
>CKL_0602(proS2) Score=115 Pos=-285 [Clostridium kluyveri DSM 555]
AAAATGCAAAGAAGGGGACTAGTAAATTTTATATTCTTTTTTAGAGAGGAAACATCTGGTGAGAGTTTCTAAAGAATTATTTTGAACCTGCCCTGGAGTTTCTGTATTTTAATTATTAGAGTGCAGCGGTGATAATCGTTAAAGTTTTAAGCGAGTATATTTGGTATCAAATATATTAATCAGGGTGGTACCGCCGATATAACCTCGGTCCCTTTAGG
# RNA - T-box(Ser)
>CKL_3817(yurG) Score=107.3 Pos=-299 [Clostridium kluyveri DSM 555]
ATATTGTCTTATGAAGAGAATAGTAACATGAGTTCAGGTAAAAGAGAGTCAGTGGTTGGTGTAAACTGGTACCCATACTTTTGTGAATCCGCCTTGGAGGATTATTATGATGAATAATACGGAAAACCGTTATTTGAGTTGAGAGAATTATACATAAAAGGTATAATTAATAAGGGTGGCAACGCGAGTCAATCGTCCCTAAA
# RNA - T-box(Trp)
>CKL_1274(trpE) Score=89.9 Pos=-366 [Clostridium kluyveri DSM 555]
TAAATCCTATGAGCAGGAGTAGTAAGTATTATAATTTAGGCTAAGAGAGTCTGAGATGGTGGGATTCAGATGCTAATGTTAATGCCGAATGGATCTGTAAGGTGTGATGTGAATTAATAGTAGCAGTATCCGGTAGTCTACCGTTAAAAAGACAGGGTATCGAGAATATTTCTCCGTACCTGAAAGAGAGAGTTTTATTTGGGTGGCTAAGAAATTGGGCATTTCTTCCTAAAAGGGAGAAATGCTTTTTATTTTTGACTGTACCATCTAATATAAGATTAATATGGGTGGTACCGCGGAAAATACACTTCGTCCCTTTTAA
>CKL_3062(trpB2) Score=110 Pos=-316 [Clostridium kluyveri DSM 555]
AAATAAACTGATGAATAAGAATAGTATTCTAGAATTATATGTTTTTTAGAGAGTCGCAGCTTGGGTGAAATGCGATAACATTTATCTAGATGAATGGACTTATGAAGGCAGTCTGAAAGGATCTTTTCCAAGTAGGCACTGACGGAAACTCTACCCGTTATAAATTGAGCATATATTATCATGTATATGAAAAGAGTGGGTAATTTTTTACCAATTTGGGTGGTATCGCAGGAGTATGAGCTCTTGTCCCTTTT
>CKL_0804(trpP) Score=99.6 Pos=-314 [Clostridium kluyveri DSM 555]
TAAATCCTTTGACGAGGAATAGTAGCTATGTTGTTGAATTCTAGAGAGTTGAGGAAGGTGGAATCTCAATATTACAACCTGTAGTGAATGGGCCTAAGAGGAGTAAATTGAAATCTATGTGTATAGAGAGTAGTGGTTAACGTTAGCCGTACGTTACAGCGGATAGGACATGTTAGTGTCTGATAAAGAGGTGTTTTAAAAAGCACAATTTAGGTGGTACCGCGGGTGATATCTCCGTCCTAGTTTT
# RNA - T-box(Val)
>CKL_3219(valS) Score=109.1 Pos=-268 [Clostridium kluyveri DSM 555]
TGTAATCACTGTGAAAAAGAGGAGTAGAGGTAATAGAGTATAAAGAGAGGAAAACTTATTAGTTGAGAGGTTTTCTATATAAGTTATCTCCAAGGTAGCTTTAGAGTTTCTTTACTGAAATATTCAGTAGGTAAAGACGGTTTCTTAATCGTTATTTTTTTAAGAGTCTGTGATTTTACAGGAAAAAAGGTGGTAACGCGGGCCTCCGTCCTTTAT
# RNA - glmS
>CKL_0317(glmS) Score=105.4 Pos=-372 [Clostridium kluyveri DSM 555]
AAGCATAAAAAGCGCCAGAACTCAGGTGATTTTTTAAAATAAAATACATATAATTATTTTAAATGTATAAATTACTTTGAGTTGACGAGGATGGGGAGTATCGAATCTTCGGCGGGTGCCCCACGGTATCGCACTACCGTTAACAGCTGGTAAAACCAAAAAGTGATTTTTGGTACAATATCAGCCTGGTGTTAAAACC
# RNA - TPP
>CKL_2038(thiT) Score=76.2 Pos=-164 [Clostridium kluyveri DSM 555]
CTTAATGCTAGGGGTGCCTTGTGGCTGAGAAACACCAGTTGTTAACCCTTCTACCTGATCTGGATAACACCAGCGTAGGGAAGCGGATTTTTAGAAAAAT
>CKL_1639(thiS) Score=66.6 Pos=-318 [Clostridium kluyveri DSM 555]
TAATATCTTTAAGGGGAGTCTGTATTAACAGTCTGAGAATGGGATGTTATCCCTTACCCTCATAACCTGATTTGGGTAATGCCAACGTAGGGAAATACGGTTTGTTATCA
>CKL_2919(thiD) Score=80.4 Pos=-169 [Clostridium kluyveri DSM 555]
AATAGTTTTGTGGGGGTGCTTGTAAAAGCTGAGAAGAAATATTTCTAACCCTTTGAACCTGATCCAGGTAAAGCTGGCGTAGGGAAACAATATTGTATAGTCT
>CKL_1776(thiC) Score=55.9 Pos=-241 [Clostridium kluyveri DSM 555]
ATATTATGTGCAGGGGGGCTGGTGTTTCCGGCTGAGATTAAGAAGTTAATTCTTTGACCCTAAACCTGATCTGGGTAATGCCAGCGTAGGAAGTTGTTTGTGTAGGTAT
>CKL_2891 Score=66.1 Pos=-191 [Clostridium kluyveri DSM 555]
ATAACGGACAGGGGAGCTTGTGAAACGGGCTGAGAGGAAGTTTATAACTTCGACCCTTACACCTGATGTGGATAATGCCACCGTAGGAAAGGTCTCTGTTGCTATTATCG
# TF - Zur: CKL_3342
>CKL_2190(rpsD2) Score=5.8 Pos=-152 [Clostridium kluyveri DSM 555]
ATATTGAACATCATTTTCAATTA
>CKL_3051(znuA) Score=5.9 Pos=-53 [Clostridium kluyveri DSM 555]
TAGATGCAAACCATTTGCATCTA
>CKL_2453(yciC) Score=6.4 Pos=-79 [Clostridium kluyveri DSM 555]
TAAATGCTAATAATTTGCATTTA
>CKL_2905(znuC) Score=5.8 Pos=-112 [Clostridium kluyveri DSM 555]
TATTTGCAAATCACTTGCAACTA
>CKL_2165(fld) Score=5.7 Pos=-56 [Clostridium kluyveri DSM 555]
TATATGATAATGATTTTCATTAT
# TF - NiaR: CKL_0014
>CKL_0748(nadA) Score=6.4 Pos=-110 [Clostridium kluyveri DSM 555]
TACTGATGTATATACAGTAGAA
>CKL_1488(niaX) Score=6.5 Pos=-36 [Clostridium kluyveri DSM 555]
TACTGGTGTATATACATTTGTT
# RNA - ydaO-yuaA
>CKL_0312(COG3773) Score=85.2 Pos=-136 [Clostridium kluyveri DSM 555]
ACAATATCATTAGCCTAAGTTTTATAAAAAACACGGGGAAACCAGTACTATTTTGGGGTGAATCGTAATTTATTACGTAGGTTATGCCTTTTCCGAACCCGTCAGCTAACCCCGTCGGTAATAAGGAGGATATAT
>CKL_0667(lysM/COG3773) Score=88.3 Pos=-147 [Clostridium kluyveri DSM 555]
ACTATAAAACAAGCCTAAACTTCCAAAACTGGAATCAAGTGCGGGGGATAACAATATTTGAGGTGAATCTTTTTATTAAAAAGTAGGACAATCCCTCTCCGAACCTGTCAACTAACCTCGTAGGCTAATTAGGGAGGATAT
# RNA - ykkC-yxkD
>CKL_2463(ykkD) Score=79.4 Pos=-161 [Clostridium kluyveri DSM 555]
ATTTAAAGTTTTATAGGGTTCCGCAGTTTGAAATTGATAATTGGTCTGGTCCAAGATAAAACGCACAGTTTGCTGTGTTCACGGAAGGATAAAAGCCTGGGAGAT
# RNA - ykoK
>CKL_3588(mgtE) Score=148.7 Pos=-386 [Clostridium kluyveri DSM 555]
ATTTTTGTTATGTTAGGTGAGGCTCCTATATAGATATATGCTACTGCCCGGAAACATCGAGAGATGCCAATGGGTCAACAGGTATTACCGAATTAAGGTTTTACTTAATGTAGCTGGACAAAATTTAGTCTAAAGCTATATAGTGCTAAAACTCAGACGATTTAAAAGTTT
# RNA - yybP-ykoY
>CKL_3423(COG2119) Score=61 Pos=-230 [Clostridium kluyveri DSM 555]
TTCAGATGTTAAAGGGGAGTAACTACCCTATGGTGGAGATAAAGTCAACATACTGACCTTTATTTTTGGTCTGGCTTTATCATGGCTGATATCAGTCAAGTGAGACTTTTAACACAATG
>CKL_2793(ykoY) Score=47.1 Pos=-204 [Clostridium kluyveri DSM 555]
AATCAGTTGAAGGGGAGTAATTTTAAGTTACAAAGTCAACATTTCGATCCAAATTTAAGGATCTGGTTTTGTAAGCCCTATGGGGTAATAAGACTTTTAACATAGTTCA
# TF - CcpA: CKL_3751
>CKL_2031(lrgA) Score=4.3 Pos=-217 [Clostridium kluyveri DSM 555]
AAGTAAATGATATCAT
>CKL_1779 Score=4 Pos=-32 [Clostridium kluyveri DSM 555]
AAGATAAAATTTATAA
>CKL_1551(serB) Score=4 Pos=-113 [Clostridium kluyveri DSM 555]
TTTTAAAAAATATATT
>CKL_1471(kdpA) Score=4 Pos=-327 [Clostridium kluyveri DSM 555]
TAGAAAATATTTCAAA
>CKL_2702(clpB) Score=4.2 Pos=-30 [Clostridium kluyveri DSM 555]
AAGAAAAAGTTTTATG
>CKL_2732(pbp) Score=4.2 Pos=-154 [Clostridium kluyveri DSM 555]
ATTTAAATAATTTATT
>CKL_2172 Score=4.1 Pos=-77 [Clostridium kluyveri DSM 555]
TTTAAAATTATTATAT
>CKL_2743(livH) Score=4.4 Pos=-55 [Clostridium kluyveri DSM 555]
ATGTAAAAATTTATTT
>CKL_0782(yrvJ) Score=4.6 Pos=-174 [Clostridium kluyveri DSM 555]
TTAAAAAAGTTTTAAT
>CKL_3197(ytxC) Score=4.1 Pos=-195 [Clostridium kluyveri DSM 555]
ATTATAATTTTTTAAT
>CKL_0447(pykA) Score=4.1 Pos=-127 [Clostridium kluyveri DSM 555]
ATAAAAAAAATAAAAT
>CKL_0447(pykA) Score=4.3 Pos=-107 [Clostridium kluyveri DSM 555]
TTGAAATAATTTTAAT
>CKL_2838 Score=4.5 Pos=-133 [Clostridium kluyveri DSM 555]
TTAAAAAAGTTTAAAA
>CKL_0783(CKL_0783) Score=4.2 Pos=-205 [Clostridium kluyveri DSM 555]
TTATAAAAATTTTAAA
>CKL_0783(CKL_0783) Score=4.2 Pos=-177 [Clostridium kluyveri DSM 555]
ATGAAAAAATATAAAA
>CKL_0783(CKL_0783) Score=4.2 Pos=-142 [Clostridium kluyveri DSM 555]
TAAAAAATGTTATAAT
# TF - Rex: CKL_0453
>CKL_0591(nadO) Score=4.7 Pos=-75 [Clostridium kluyveri DSM 555]
TTGTTTTAATTTTATCAT
>CKL_0454(crt) Score=5.1 Pos=-64 [Clostridium kluyveri DSM 555]
TTGTGATATTATTAACAA
>CKL_0591(nadO) Score=5.4 Pos=-46 [Clostridium kluyveri DSM 555]
TTGTCAAAAAATTATCAA
# TF - CzrA: CKL_3732, CKL_3755
>CKL_2303(cadA) Score=6.3 Pos=-159 [Clostridium kluyveri DSM 555]
CATATGAACAATAACTCATATG
# TF - NrdR: CKL_1344
>CKL_3757(nrdD) Score=5.6 Pos=-32 [Clostridium kluyveri DSM 555]
ACACAATATATAGTAG
>CKL_3757(nrdD) Score=4.6 Pos=0 [Clostridium kluyveri DSM 555]
ATGCTACATGTTGTGA
# TF - YhcF: CKL_2363
>CKL_2363(yhcF) Score=5.3 Pos=-44 [Clostridium kluyveri DSM 555]
GTGTATTATTATAATAGAACAC
>CKL_1661(CAC3585) Score=5.9 Pos=-69 [Clostridium kluyveri DSM 555]
GTGTATTATAACTATAGTACAC
# TF - Cbei_4343: CKL_0385
>CKL_0385(Cbei_4343) Score=8.2 Pos=-51 [Clostridium kluyveri DSM 555]
TGTGAACATTGTATATATTATATATATACAATGTTCACA
# TF - BirA: CKL_2417
>CKL_1696(bioB) Score=9.1 Pos=-87 [Clostridium kluyveri DSM 555]
TTGTAAAC---------------GTTTACAA
>CKL_0936(bioY1) Score=8.5 Pos=-93 [Clostridium kluyveri DSM 555]
TTGTAAAC---------------GTTGACTA
>CKL_2248(bioY2) Score=9 Pos=-108 [Clostridium kluyveri DSM 555]
TTGTAAAC---------------GTTGACAA
# TF - IscR: CKL_1317
>CKL_0828(sufC) Score=5.7 Pos=-41 [Clostridium kluyveri DSM 555]
TTAAATATGAGTCAAATACTCGGATTTAA
>CKL_1317(iscR) Score=5.8 Pos=-71 [Clostridium kluyveri DSM 555]
TTATTGTTGACAAGTTTACTCTGATTTGA
# TF - YdfD/YisV: CKL_2224
>CKL_2223(yisU) Score=8.1 Pos=-116 [Clostridium kluyveri DSM 555]
TGGTTGG-----------------TGGATGG
# TF - HcpR: CKL_2420
>CKL_0935(hcp) Score=4.8 Pos=-100 [Clostridium kluyveri DSM 555]
TCGTATCCTAAGTTACCG
>CKL_2419(frdX) Score=5.5 Pos=-74 [Clostridium kluyveri DSM 555]
GTGTAACGTAAGTTACAG
>CKL_2420(hcpR) Score=5.5 Pos=-67 [Clostridium kluyveri DSM 555]
CTGTAACTTACGTTACAC