Statistics of regulated genes

Genome	Genes	Operons
Clostridium kluyveri DSM 555	2	2
Clostridium sp. SS2/1	2	2
Clostridium cellulolyticum H10	2	2
Clostridium phytofermentans ISDg	3	3
Clostridium tetani E88	1	1
Clostridium acetobutylicum ATCC 824
Clostridium botulinum A str. ATCC 3502	3	3
Clostridium novyi NT
Clostridium perfringens ATCC 13124	2	2
Clostridium difficile 630	1	1
Clostridium beijerincki NCIMB 8052	4	4
Clostridium sp. OhILAs
Clostridium sp. L2-50	3	2
Clostridium scindens ATCC 35704	3	2
Clostridium nexile DSM 1787	2	2
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275	2	2
Clostridium butyricum 5521	2	2
Clostridium bolteae ATCC BAA-613	4	3
Clostridium bartlettii DSM 16795	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																					Function
CRON 1.
ykoY	* Clostridium kluyveri DSM 555 Site: position = -204 score = 47.14 sequence = AATCAGTTGAAGGGG... Gene: CKL_2793: Membrane protein, TerC family	Clostridium sp. SS2/1	*2 Clostridium cellulolyticum H10 Site: position = -164 score = 57.97 sequence = TAAACTTGTTAAAAG... Gene: Ccel_1647: Membrane protein, TerC family Site: position = -214 score = 46.77 sequence = CTTTTTATGAAAAGG... Gene: Ccel_2297: Membrane protein, TerC family	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -373 score = 17.29 sequence = CACTAAGCATTTTTT... Gene: Cbei_2212: Membrane protein, TerC family	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Membrane protein, TerC family
CRON 2.
CPF_0825	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1 Gene: CLOSS21_02736: hypothetical protein	Clostridium cellulolyticum H10 Gene: Ccel_1441: hypothetical protein	Clostridium phytofermentans ISDg Gene: null: hypothetical protein	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124 Gene: CPF_0825: hypothetical protein	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	* Clostridium bolteae ATCC BAA-613 Site: position = -214 score = 43.06 sequence = CAGTTCCAATAAAAG... Gene: CLOBOL_01900: hypothetical protein	Clostridium bartlettii DSM 16795	hypothetical protein
CPF_0680	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124 Gene: CPF_0680: conserved hypothetical protein	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	* Clostridium scindens ATCC 35704 Site: position = -216 score = 37.8 sequence = TTATGCAGATAAAAG... Gene: CLOSCI_01438: conserved hypothetical protein	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_1196: conserved hypothetical protein	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_01899: conserved hypothetical protein	Clostridium bartlettii DSM 16795	conserved hypothetical protein
CBO2022	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502 Gene: CBO2022: hypothetical protein	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704 Gene: CLOSCI_01437: hypothetical protein	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein
CRON 3.
htpX	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -211 score = 64.79 sequence = CTCATTTATAGGGGG... Gene: Cbei_2213: Peptidase M48, Ste24p precursor	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Peptidase M48, Ste24p precursor
CRON 4.
Cbei_1147	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -182 score = 47.12 sequence = TTCATATAACTTAGG... Gene: Cbei_3038: probable metal-dependent peptidase	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	probable metal-dependent peptidase
CRON 5.
atcL	Clostridium kluyveri DSM 555 Gene: CKL_0990: Calcium-transporting ATPase (EC 3.6.3.8)	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2465: Calcium-transporting ATPase (EC 3.6.3.8)	*3 Clostridium phytofermentans ISDg Site: position = -321 score = 45.71 sequence = TAAAATACTCGTGAG... Gene: null: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -437 score = 27.12 sequence = ATCCAGTATAGTGGG... Gene: null: Calcium-transporting ATPase (EC 3.6.3.8) Gene: null: Calcium-transporting ATPase (EC 3.6.3.8)	* Clostridium tetani E88 Site: position = -368 score = 58.77 sequence = TACTATATAAAGGGG... Gene: CTC00664: Calcium-transporting ATPase (EC 3.6.3.8)	Clostridium acetobutylicum ATCC 824	*2 Clostridium botulinum A str. ATCC 3502 Site: position = -240 score = 69.3 sequence = TCATGAAGACAAGGG... Gene: CBO0532: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -412 score = 46.37 sequence = ATGTGTTATTAAAAG... Gene: CBO1545: Calcium-transporting ATPase (EC 3.6.3.8)	Clostridium novyi NT Gene: NT01CX_0105: Calcium-transporting ATPase (EC 3.6.3.8)	*2 Clostridium perfringens ATCC 13124 Gene: CPF_1412: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -245 score = 42.61 sequence = CTATTGTGTTAAGAG... Gene: CPF_0317: Calcium-transporting ATPase (EC 3.6.3.8)	*3 Clostridium difficile 630 Site: position = -238 score = 66.9 sequence = ATAACTACTCGAAGG... Gene: CD2503: Calcium-transporting ATPase (EC 3.6.3.8) Gene: CD1637: Calcium-transporting ATPase (EC 3.6.3.8) Gene: CD1824: Calcium-transporting ATPase (EC 3.6.3.8)	*2 Clostridium beijerincki NCIMB 8052 Gene: Cbei_1036: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -347 score = 48.51 sequence = TCACTACATTAAAAG... Gene: Cbei_0306: Calcium-transporting ATPase (EC 3.6.3.8)	Clostridium sp. OhILAs	* Clostridium sp. L2-50 Site: position = -121 score = 63.35 sequence = ATCATTCAAAAAGGG... Gene: CLOL250_02208: Calcium-transporting ATPase (EC 3.6.3.8)	* Clostridium scindens ATCC 35704 Site: position = -178 score = 51.47 sequence = GTAATAATAAAAGGG... Gene: CLOSCI_02991: Calcium-transporting ATPase (EC 3.6.3.8)	*2 Clostridium nexile DSM 1787 Gene: CLONEX_00439: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -203 score = 55.6 sequence = TTTTATAGATAAAAG... Gene: CLONEX_03625: Calcium-transporting ATPase (EC 3.6.3.8)	Clostridium leptum DSM 753 Gene: CLOLEP_01453: Calcium-transporting ATPase (EC 3.6.3.8)	* Clostridium hiranonis DSM 13275 Site: position = -218 score = 56.34 sequence = TACTTCTCGAAGGGG... Gene: CLOHIR_02014: Calcium-transporting ATPase (EC 3.6.3.8)	*2 Clostridium butyricum 5521 Site: position = -203 score = 39.01 sequence = TGGATTTGTTAAAGG... Gene: CBY_1177: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -207 score = 46.43 sequence = AAACATGTTCCTGGG... Gene: CBY_2688: Calcium-transporting ATPase (EC 3.6.3.8)	* Clostridium bolteae ATCC BAA-613 Site: position = -268 score = 33.8 sequence = GGAACAGCTCGAAAG... Gene: CLOBOL_04443: Calcium-transporting ATPase (EC 3.6.3.8)	*2 Clostridium bartlettii DSM 16795 Site: position = -171 score = 70.46 sequence = TTTCCCTCGAAGGGG... Gene: CLOBAR_01021: Calcium-transporting ATPase (EC 3.6.3.8) Gene: CLOBAR_01770: Calcium-transporting ATPase (EC 3.6.3.8)	Calcium-transporting ATPase (EC 3.6.3.8)
CRON 6.
COG0530	Clostridium kluyveri DSM 555	* Clostridium sp. SS2/1 Site: position = -184 score = 28.66 sequence = TCAATATTCCATGAG... Gene: CLOSS21_00097: putative K+-dependent Na+/Ca+ exchanger	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	* Clostridium sp. L2-50 Site: position = -242 score = 41.67 sequence = AATATTCCATGAGGG... Gene: CLOL250_02694: putative K+-dependent Na+/Ca+ exchanger	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	putative K+-dependent Na+/Ca+ exchanger
COG2119	* Clostridium kluyveri DSM 555 Site: position = -230 score = 60.98 sequence = TTCAGATGTTAAAGG... Gene: CKL_3423: Probable transmembrane protein	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50 Gene: CLOL250_02695: Probable transmembrane protein	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Probable transmembrane protein
CRON 7.
COG1971	Clostridium kluyveri DSM 555	* Clostridium sp. SS2/1 Site: position = -197 score = 63.24 sequence = AGATATTTCCGTGAG... Gene: CLOSS21_00786: Putative membrane protein, COG1971	Clostridium cellulolyticum H10 Gene: Ccel_1412: Putative membrane protein, COG1971	* Clostridium phytofermentans ISDg Site: position = -199 score = 43.6 sequence = ATATCTACTGGTAAG... Gene: null: Putative membrane protein, COG1971	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	* Clostridium botulinum A str. ATCC 3502 Site: position = -183 score = 39.23 sequence = TAATGAGTATGAGGG... Gene: CBO1290: Putative membrane protein, COG1971	Clostridium novyi NT	* Clostridium perfringens ATCC 13124 Site: position = -166 score = 54.06 sequence = GTTTCCATATGAGGG... Gene: CPF_0516: Putative membrane protein, COG1971	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs Gene: Clos_0882: Putative membrane protein, COG1971	Clostridium sp. L2-50	Clostridium scindens ATCC 35704 Gene: CLOSCI_00022: Putative membrane protein, COG1971	* Clostridium nexile DSM 1787 Site: position = -140 score = 52.3 sequence = TTCAGAGACGATAAG... Gene: CLONEX_00436: Putative membrane protein, COG1971	Clostridium leptum DSM 753 Gene: CLOLEP_03237: Putative membrane protein, COG1971	* Clostridium hiranonis DSM 13275 Site: position = -196 score = 35.81 sequence = ATTTTTAGCAATAAG... Gene: CLOHIR_01890: Putative membrane protein, COG1971	Clostridium butyricum 5521 Gene: CBY_3039: Putative membrane protein, COG1971	* Clostridium bolteae ATCC BAA-613 Site: position = -186 score = 49.74 sequence = AGCAAGTGATAAGGG... Gene: CLOBOL_03265: Putative membrane protein, COG1971	*2 Clostridium bartlettii DSM 16795 Site: position = -93 score = 66.18 sequence = AATAACTCCTATGAG... Gene: CLOBAR_01351: Putative membrane protein, COG1971 Gene: CLOBAR_01751: Putative membrane protein, COG1971	Putative membrane protein, COG1971

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