Regulog yybP-ykoY - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | yybP-ykoY |
| RFAM: | RF00080 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - yybP-ykoY
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 2 | 2 |
| Clostridium sp. SS2/1 | 2 | 2 |
| Clostridium cellulolyticum H10 | 2 | 2 |
| Clostridium phytofermentans ISDg | 3 | 3 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | ||
| Clostridium botulinum A str. ATCC 3502 | 3 | 3 |
| Clostridium novyi NT | ||
| Clostridium perfringens ATCC 13124 | 2 | 2 |
| Clostridium difficile 630 | 1 | 1 |
| Clostridium beijerincki NCIMB 8052 | 4 | 4 |
| Clostridium sp. OhILAs | ||
| Clostridium sp. L2-50 | 3 | 2 |
| Clostridium scindens ATCC 35704 | 3 | 2 |
| Clostridium nexile DSM 1787 | 2 | 2 |
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | 2 | 2 |
| Clostridium butyricum 5521 | 2 | 2 |
| Clostridium bolteae ATCC BAA-613 | 4 | 3 |
| Clostridium bartlettii DSM 16795 | 2 | 2 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| ykoY |
*
Clostridium kluyveri DSM 555 Site: position = -204 score = 47.14 sequence = AATCAGTTGAAGGGG... Gene: CKL_2793: Membrane protein, TerC family |
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*2
Clostridium cellulolyticum H10 Site: position = -164 score = 57.97 sequence = TAAACTTGTTAAAAG... Gene: Ccel_1647: Membrane protein, TerC family Site: position = -214 score = 46.77 sequence = CTTTTTATGAAAAGG... Gene: Ccel_2297: Membrane protein, TerC family |
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*
Clostridium beijerincki NCIMB 8052 Site: position = -373 score = 17.29 sequence = CACTAAGCATTTTTT... Gene: Cbei_2212: Membrane protein, TerC family |
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Membrane protein, TerC family |
| CRON 2. | |||||||||||||||||||||
| CPF_0825 |
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Gene: CLOSS21_02736: hypothetical protein |
Gene: Ccel_1441: hypothetical protein |
Gene: null: hypothetical protein |
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Gene: CPF_0825: hypothetical protein |
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*
Clostridium bolteae ATCC BAA-613 Site: position = -214 score = 43.06 sequence = CAGTTCCAATAAAAG... Gene: CLOBOL_01900: hypothetical protein |
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hypothetical protein |
| CPF_0680 |
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Gene: CPF_0680: conserved hypothetical protein |
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Clostridium scindens ATCC 35704 Site: position = -216 score = 37.8 sequence = TTATGCAGATAAAAG... Gene: CLOSCI_01438: conserved hypothetical protein |
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Gene: CBY_1196: conserved hypothetical protein |
Gene: CLOBOL_01899: conserved hypothetical protein |
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conserved hypothetical protein |
| CBO2022 |
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Gene: CBO2022: hypothetical protein |
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Gene: CLOSCI_01437: hypothetical protein |
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hypothetical protein |
| CRON 3. | |||||||||||||||||||||
| htpX |
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*
Clostridium beijerincki NCIMB 8052 Site: position = -211 score = 64.79 sequence = CTCATTTATAGGGGG... Gene: Cbei_2213: Peptidase M48, Ste24p precursor |
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Peptidase M48, Ste24p precursor |
| CRON 4. | |||||||||||||||||||||
| Cbei_1147 |
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*
Clostridium beijerincki NCIMB 8052 Site: position = -182 score = 47.12 sequence = TTCATATAACTTAGG... Gene: Cbei_3038: probable metal-dependent peptidase |
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probable metal-dependent peptidase |
| CRON 5. | |||||||||||||||||||||
| atcL |
Gene: CKL_0990: Calcium-transporting ATPase (EC 3.6.3.8) |
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Gene: Ccel_2465: Calcium-transporting ATPase (EC 3.6.3.8) |
*3
Clostridium phytofermentans ISDg Site: position = -321 score = 45.71 sequence = TAAAATACTCGTGAG... Gene: null: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -437 score = 27.12 sequence = ATCCAGTATAGTGGG... Gene: null: Calcium-transporting ATPase (EC 3.6.3.8) Gene: null: Calcium-transporting ATPase (EC 3.6.3.8) |
*
Clostridium tetani E88 Site: position = -368 score = 58.77 sequence = TACTATATAAAGGGG... Gene: CTC00664: Calcium-transporting ATPase (EC 3.6.3.8) |
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*2
Clostridium botulinum A str. ATCC 3502 Site: position = -240 score = 69.3 sequence = TCATGAAGACAAGGG... Gene: CBO0532: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -412 score = 46.37 sequence = ATGTGTTATTAAAAG... Gene: CBO1545: Calcium-transporting ATPase (EC 3.6.3.8) |
Gene: NT01CX_0105: Calcium-transporting ATPase (EC 3.6.3.8) |
*2
Clostridium perfringens ATCC 13124 Gene: CPF_1412: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -245 score = 42.61 sequence = CTATTGTGTTAAGAG... Gene: CPF_0317: Calcium-transporting ATPase (EC 3.6.3.8) |
*3
Clostridium difficile 630 Site: position = -238 score = 66.9 sequence = ATAACTACTCGAAGG... Gene: CD2503: Calcium-transporting ATPase (EC 3.6.3.8) Gene: CD1637: Calcium-transporting ATPase (EC 3.6.3.8) Gene: CD1824: Calcium-transporting ATPase (EC 3.6.3.8) |
*2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_1036: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -347 score = 48.51 sequence = TCACTACATTAAAAG... Gene: Cbei_0306: Calcium-transporting ATPase (EC 3.6.3.8) |
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*
Clostridium sp. L2-50 Site: position = -121 score = 63.35 sequence = ATCATTCAAAAAGGG... Gene: CLOL250_02208: Calcium-transporting ATPase (EC 3.6.3.8) |
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Clostridium scindens ATCC 35704 Site: position = -178 score = 51.47 sequence = GTAATAATAAAAGGG... Gene: CLOSCI_02991: Calcium-transporting ATPase (EC 3.6.3.8) |
*2
Clostridium nexile DSM 1787 Gene: CLONEX_00439: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -203 score = 55.6 sequence = TTTTATAGATAAAAG... Gene: CLONEX_03625: Calcium-transporting ATPase (EC 3.6.3.8) |
Gene: CLOLEP_01453: Calcium-transporting ATPase (EC 3.6.3.8) |
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Clostridium hiranonis DSM 13275 Site: position = -218 score = 56.34 sequence = TACTTCTCGAAGGGG... Gene: CLOHIR_02014: Calcium-transporting ATPase (EC 3.6.3.8) |
*2
Clostridium butyricum 5521 Site: position = -203 score = 39.01 sequence = TGGATTTGTTAAAGG... Gene: CBY_1177: Calcium-transporting ATPase (EC 3.6.3.8) Site: position = -207 score = 46.43 sequence = AAACATGTTCCTGGG... Gene: CBY_2688: Calcium-transporting ATPase (EC 3.6.3.8) |
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Clostridium bolteae ATCC BAA-613 Site: position = -268 score = 33.8 sequence = GGAACAGCTCGAAAG... Gene: CLOBOL_04443: Calcium-transporting ATPase (EC 3.6.3.8) |
*2
Clostridium bartlettii DSM 16795 Site: position = -171 score = 70.46 sequence = TTTCCCTCGAAGGGG... Gene: CLOBAR_01021: Calcium-transporting ATPase (EC 3.6.3.8) Gene: CLOBAR_01770: Calcium-transporting ATPase (EC 3.6.3.8) |
Calcium-transporting ATPase (EC 3.6.3.8) |
| CRON 6. | |||||||||||||||||||||
| COG0530 |
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Clostridium sp. SS2/1 Site: position = -184 score = 28.66 sequence = TCAATATTCCATGAG... Gene: CLOSS21_00097: putative K+-dependent Na+/Ca+ exchanger |
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Clostridium sp. L2-50 Site: position = -242 score = 41.67 sequence = AATATTCCATGAGGG... Gene: CLOL250_02694: putative K+-dependent Na+/Ca+ exchanger |
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putative K+-dependent Na+/Ca+ exchanger |
| COG2119 |
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Clostridium kluyveri DSM 555 Site: position = -230 score = 60.98 sequence = TTCAGATGTTAAAGG... Gene: CKL_3423: Probable transmembrane protein |
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Gene: CLOL250_02695: Probable transmembrane protein |
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Probable transmembrane protein |
| CRON 7. | |||||||||||||||||||||
| COG1971 |
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*
Clostridium sp. SS2/1 Site: position = -197 score = 63.24 sequence = AGATATTTCCGTGAG... Gene: CLOSS21_00786: Putative membrane protein, COG1971 |
Gene: Ccel_1412: Putative membrane protein, COG1971 |
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Clostridium phytofermentans ISDg Site: position = -199 score = 43.6 sequence = ATATCTACTGGTAAG... Gene: null: Putative membrane protein, COG1971 |
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Clostridium botulinum A str. ATCC 3502 Site: position = -183 score = 39.23 sequence = TAATGAGTATGAGGG... Gene: CBO1290: Putative membrane protein, COG1971 |
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Clostridium perfringens ATCC 13124 Site: position = -166 score = 54.06 sequence = GTTTCCATATGAGGG... Gene: CPF_0516: Putative membrane protein, COG1971 |
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Gene: Clos_0882: Putative membrane protein, COG1971 |
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Gene: CLOSCI_00022: Putative membrane protein, COG1971 |
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Clostridium nexile DSM 1787 Site: position = -140 score = 52.3 sequence = TTCAGAGACGATAAG... Gene: CLONEX_00436: Putative membrane protein, COG1971 |
Gene: CLOLEP_03237: Putative membrane protein, COG1971 |
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Clostridium hiranonis DSM 13275 Site: position = -196 score = 35.81 sequence = ATTTTTAGCAATAAG... Gene: CLOHIR_01890: Putative membrane protein, COG1971 |
Gene: CBY_3039: Putative membrane protein, COG1971 |
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Clostridium bolteae ATCC BAA-613 Site: position = -186 score = 49.74 sequence = AGCAAGTGATAAGGG... Gene: CLOBOL_03265: Putative membrane protein, COG1971 |
*2
Clostridium bartlettii DSM 16795 Site: position = -93 score = 66.18 sequence = AATAACTCCTATGAG... Gene: CLOBAR_01351: Putative membrane protein, COG1971 Gene: CLOBAR_01751: Putative membrane protein, COG1971 |
Putative membrane protein, COG1971 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |