Regulog T-box(Pro) - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Pro-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - Pro-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 1 | 1 |
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | ||
| Clostridium phytofermentans ISDg | 1 | 1 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 1 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
| Clostridium novyi NT | 1 | 1 |
| Clostridium perfringens ATCC 13124 | 1 | 1 |
| Clostridium difficile 630 | 2 | 1 |
| Clostridium beijerincki NCIMB 8052 | 1 | 1 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | 1 | 1 |
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | 2 | 1 |
| Clostridium butyricum 5521 | 1 | 1 |
| Clostridium bolteae ATCC BAA-613 | 1 | 1 |
| Clostridium bartlettii DSM 16795 | 1 | 1 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| proS2 |
*
Clostridium kluyveri DSM 555 Site: position = -285 score = 115.02 sequence = AAAATGCAAAGAAGG... Gene: CKL_0602: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
Gene: CLOSS21_00467: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
Gene: Ccel_0345: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
*
Clostridium phytofermentans ISDg Site: position = -344 score = 110.28 sequence = GAAAGTTGCGATGAA... Gene: null: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
|
|
*
Clostridium botulinum A str. ATCC 3502 Site: position = -270 score = 117.45 sequence = TTTTATAGCAAAGAA... Gene: CBO3344: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
*
Clostridium novyi NT Site: position = -300 score = 113.1 sequence = TTATGACTAAGATAA... Gene: NT01CX_0337: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
|
Gene: CD0050: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
|
*
Clostridium sp. OhILAs Site: position = -267 score = 114.18 sequence = ATAAATCTATGATGG... Gene: Clos_0465: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
Gene: CLOL250_02969: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
*
Clostridium scindens ATCC 35704 Site: position = -311 score = 104.69 sequence = ATTTGGCAATGAAGA... Gene: CLOSCI_01983: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
*
Clostridium nexile DSM 1787 Site: position = -297 score = 107.31 sequence = AATATTGGCTGTGAA... Gene: CLONEX_03542: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
Gene: CLOLEP_03755: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
*
Clostridium hiranonis DSM 13275 Site: position = -290 score = 119.93 sequence = TGATTGCAATGATAA... Gene: CLOHIR_01549: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
|
*
Clostridium bolteae ATCC BAA-613 Site: position = -309 score = 95.68 sequence = AGATATGACATGGAA... Gene: CLOBOL_06453: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
|
Prolyl-tRNA synthetase (EC 6.1.1.15) ## Archaeal type |
| proS |
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|
*
Clostridium tetani E88 Site: position = -250 score = 73.64 sequence = TAAAGTGACTATGAT... Gene: CTC02625: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type |
*
Clostridium acetobutylicum ATCC 824 Site: position = -206 score = 71.07 sequence = TAGTAAAACTGTGAT... Gene: CAC3178: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type |
|
|
*
Clostridium perfringens ATCC 13124 Site: position = -273 score = 83.09 sequence = TGTAAAGACTGTGAA... Gene: CPF_2738: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type |
*
Clostridium difficile 630 Site: position = -271 score = 127.91 sequence = AATTAGCTATGATAA... Gene: CD0049: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type |
*
Clostridium beijerincki NCIMB 8052 Site: position = -326 score = 80.76 sequence = GTAAAACGTTGATGA... Gene: Cbei_0130: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type |
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Gene: CLOHIR_01550: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type |
*
Clostridium butyricum 5521 Site: position = -394 score = 87.7 sequence = TTTTAGAGCAATGAT... Gene: CBY_2151: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type |
|
*
Clostridium bartlettii DSM 16795 Site: position = -278 score = 122.92 sequence = CAAAAGCAACGATTA... Gene: CLOBAR_00190: Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type |
Prolyl-tRNA synthetase (EC 6.1.1.15) ## Bacterial type |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |