Regulon of SAM in Clostridium difficile 630

Properties
Regulator type:	RNA regulatory element
Name:	SAM
RFAM:	RF00162
Regulation mode:
Biological process:	Methionine biosynthesis
Effector:	S-adenosylmethionine
Regulog:	SAM - Clostridiaceae
Under regulation:
- Genes	11
- Operons	6

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - SAM
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -219 Score: 90.5 Sequence: CTTCTTATCCAGAGT... Locus tag: CD1653 Name: metQ2 Funciton: Methionine ABC transporter substrate-binding protein
	CD1653	metQ2	Methionine ABC transporter substrate-binding protein
Position: -211 Score: 91.2 Sequence: TCTTATCAAGAGTGG... Locus tag: CD1489 Name: metN Funciton: Methionine ABC transporter ATP-binding protein Locus tag: CD1490 Name: metP Funciton: Methionine ABC transporter permease protein Locus tag: CD1491 Name: metQ Funciton: Methionine ABC transporter substrate-binding protein
	CD1489	metN	Methionine ABC transporter ATP-binding protein
	CD1490	metP	Methionine ABC transporter permease protein
	CD1491	metQ	Methionine ABC transporter substrate-binding protein
Position: -183 Score: 33.3 Sequence: ATACTTATCAAGAGT... Locus tag: CD3598 Name: rhc Funciton: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS Locus tag: CD3597 Name: msd Funciton: Methionine synthase activation domain (EC 2.1.1.13) Locus tag: CD3596 Name: metH Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
	CD3598	rhc	S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
	CD3597	msd	Methionine synthase activation domain (EC 2.1.1.13)
	CD3596	metH	5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Position: -211 Score: 87.3 Sequence: TCTTATCCAGAGAGG... Locus tag: CD1825 Name: metY Funciton: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) Locus tag: CD1826 Name: metA Funciton: Homoserine O-succinyltransferase (EC 2.3.1.46)
	CD1825	metY	O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
	CD1826	metA	Homoserine O-succinyltransferase (EC 2.3.1.46)
Position: -208 Score: 91 Sequence: TCTTATCAAGAGTGG... Locus tag: CD1166 Name: hom Funciton: Homoserine dehydrogenase (EC 1.1.1.3)
	CD1166	hom	Homoserine dehydrogenase (EC 1.1.1.3)
Position: -239 Score: 95.6 Sequence: CCTTATCAAGAGAGG... Locus tag: CD0130 Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6)
	CD0130	metK	S-adenosylmethionine synthetase (EC 2.5.1.6)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD