Regulog L19_leader - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | L19_leader |
| RFAM: | RF00556 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - L19_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 1 | 1 |
| Clostridium sp. SS2/1 | 1 | 1 |
| Clostridium cellulolyticum H10 | 1 | 1 |
| Clostridium phytofermentans ISDg | ||
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 1 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
| Clostridium novyi NT | 1 | 1 |
| Clostridium perfringens ATCC 13124 | 1 | 1 |
| Clostridium difficile 630 | 1 | 1 |
| Clostridium beijerincki NCIMB 8052 | 1 | 1 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium sp. L2-50 | 1 | 1 |
| Clostridium scindens ATCC 35704 | 1 | 1 |
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium leptum DSM 753 | 1 | 1 |
| Clostridium hiranonis DSM 13275 | ||
| Clostridium butyricum 5521 | 1 | 1 |
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium bartlettii DSM 16795 | 1 | 1 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| rplS |
*
Clostridium kluyveri DSM 555 Site: position = -68 score = 22.06 sequence = GGGCGTTCCTCTGTC... Gene: CKL_1406: LSU ribosomal protein L19p |
*
Clostridium sp. SS2/1 Site: position = 2 score = 28.49 sequence = GGATGGTCCTCTGTT... Gene: CLOSS21_02544: LSU ribosomal protein L19p |
*
Clostridium cellulolyticum H10 Site: position = -58 score = 27.93 sequence = GGATGGTCCTCTGCA... Gene: Ccel_0714: LSU ribosomal protein L19p |
Gene: null: LSU ribosomal protein L19p |
*
Clostridium tetani E88 Site: position = -48 score = 21.28 sequence = GGGCGGTCCTCTGTT... Gene: CTC01252: LSU ribosomal protein L19p |
*
Clostridium acetobutylicum ATCC 824 Site: position = -61 score = 23.42 sequence = AGGCGGTCCTCTGTC... Gene: CAC1759: LSU ribosomal protein L19p |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -78 score = 21.89 sequence = ACGGGCGGTCCTCTG... Gene: CBO2444: LSU ribosomal protein L19p |
*
Clostridium novyi NT Site: position = -76 score = 17.44 sequence = ACGGGCGGTCCTCTG... Gene: NT01CX_2208: LSU ribosomal protein L19p |
*
Clostridium perfringens ATCC 13124 Site: position = -71 score = 31.71 sequence = ACCGGCGGTCCTCTG... Gene: CPF_1962: LSU ribosomal protein L19p |
*
Clostridium difficile 630 Site: position = -65 score = 22.19 sequence = GGGCGTTCCTCTGTT... Gene: CD1257: LSU ribosomal protein L19p |
*
Clostridium beijerincki NCIMB 8052 Site: position = -64 score = 27.32 sequence = GGGCGTTCCGCTGTC... Gene: Cbei_1180: LSU ribosomal protein L19p |
*
Clostridium sp. OhILAs Site: position = -57 score = 18.6 sequence = GGACGTTCCTCTACA... Gene: Clos_1468: LSU ribosomal protein L19p |
*
Clostridium sp. L2-50 Site: position = -63 score = 32.36 sequence = ATCGATGGTCCTCTG... Gene: CLOL250_00256: LSU ribosomal protein L19p |
*
Clostridium scindens ATCC 35704 Site: position = -60 score = 19.48 sequence = AGATGGTCCTCTAGT... Gene: CLOSCI_01325: LSU ribosomal protein L19p |
*
Clostridium nexile DSM 1787 Site: position = -64 score = 27.53 sequence = AGAGATGGTCCTCTG... Gene: CLONEX_03041: LSU ribosomal protein L19p |
*
Clostridium leptum DSM 753 Site: position = -51 score = 20.41 sequence = TGACAGTCCTCTGCT... Gene: CLOLEP_02366: LSU ribosomal protein L19p |
Gene: CLOHIR_01179: LSU ribosomal protein L19p |
*
Clostridium butyricum 5521 Site: position = -69 score = 24.48 sequence = GGGCGTTCCTCTGTC... Gene: CBY_0541: LSU ribosomal protein L19p |
Gene: CLOBOL_04032: LSU ribosomal protein L19p |
*
Clostridium bartlettii DSM 16795 Site: position = -63 score = 24.76 sequence = ACGGGCATTCCTCTG... Gene: CLOBAR_02203: LSU ribosomal protein L19p |
LSU ribosomal protein L19p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |