Regulog T-box(His) - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | His-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - His-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | ||
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | ||
| Clostridium phytofermentans ISDg | ||
| Clostridium tetani E88 | ||
| Clostridium acetobutylicum ATCC 824 | ||
| Clostridium botulinum A str. ATCC 3502 | ||
| Clostridium novyi NT | ||
| Clostridium perfringens ATCC 13124 | ||
| Clostridium difficile 630 | 3 | 1 |
| Clostridium beijerincki NCIMB 8052 | ||
| Clostridium sp. OhILAs | 3 | 1 |
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | ||
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | 3 | 1 |
| Clostridium butyricum 5521 | ||
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium bartlettii DSM 16795 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| hisX |
Gene: CKL_0708: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
Gene: CLOSS21_00894: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
Gene: Ccel_0885: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
|
|
|
Gene: CBO0446: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
|
Gene: CPF_1531: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
*
Clostridium difficile 630 Site: position = -387 score = 93.69 sequence = TAAATGCTAAGAAAA... Gene: CD1774: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
Gene: Cbei_1049: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
*
Clostridium sp. OhILAs Site: position = -415 score = 102.76 sequence = TTAAAAAGCGTTGAT... Gene: Clos_2594: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
Gene: CLOL250_02269: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
Gene: CLOSCI_00784: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
Gene: CLONEX_03079: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
Gene: CLOLEP_02793: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
*
Clostridium hiranonis DSM 13275 Site: position = -406 score = 121.17 sequence = ATAAAGCGAAGAAGA... Gene: CLOHIR_00267: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
|
Gene: CLOBOL_01668: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
Gene: CLOBAR_01919: Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
Histidine ABC transporter, histidine-binding protein (TC 3.A.1) |
| hisY |
Gene: CKL_0707: Histidine ABC transporter, permease protein |
Gene: CLOSS21_00895: Histidine ABC transporter, permease protein |
Gene: Ccel_0886: Histidine ABC transporter, permease protein |
|
|
|
Gene: CBO0445: Histidine ABC transporter, permease protein |
|
Gene: CPF_1532: Histidine ABC transporter, permease protein |
Gene: CD1775: Histidine ABC transporter, permease protein |
Gene: Cbei_1050: Histidine ABC transporter, permease protein |
Gene: Clos_2593: Histidine ABC transporter, permease protein |
Gene: CLOL250_02268: Histidine ABC transporter, permease protein |
Gene: CLOSCI_00783: Histidine ABC transporter, permease protein |
Gene: CLONEX_03078: Histidine ABC transporter, permease protein |
Gene: CLOLEP_02792: Histidine ABC transporter, permease protein |
Gene: CLOHIR_00268: Histidine ABC transporter, permease protein |
Gene: CBY_1012: Histidine ABC transporter, permease protein |
Gene: CLOBOL_01669: Histidine ABC transporter, permease protein |
Gene: CLOBAR_01918: Histidine ABC transporter, permease protein |
Histidine ABC transporter, permease protein |
| hisZ |
|
Gene: CLOSS21_00896: Histidine ABC transporter, ATP-binding protein |
Gene: Ccel_0887: Histidine ABC transporter, ATP-binding protein |
|
|
|
|
|
Gene: CPF_1533: Histidine ABC transporter, ATP-binding protein |
Gene: CD1776: Histidine ABC transporter, ATP-binding protein |
Gene: Cbei_1051: Histidine ABC transporter, ATP-binding protein |
Gene: Clos_2592: Histidine ABC transporter, ATP-binding protein |
Gene: CLOL250_02267: Histidine ABC transporter, ATP-binding protein |
Gene: CLOSCI_00782: Histidine ABC transporter, ATP-binding protein |
Gene: CLONEX_03077: Histidine ABC transporter, ATP-binding protein |
Gene: CLOLEP_02791: Histidine ABC transporter, ATP-binding protein |
Gene: CLOHIR_00269: Histidine ABC transporter, ATP-binding protein |
|
Gene: CLOBOL_01670: Histidine ABC transporter, ATP-binding protein |
Gene: CLOBAR_01917: Histidine ABC transporter, ATP-binding protein |
Histidine ABC transporter, ATP-binding protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |