Regulog PreQ1 - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | PreQ1 |
| RFAM: | RF00522 |
| Regulation mode: | |
| Biological process: | Queuosine biosynthesis |
| Effector: | Pre-queuosine1 |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - PreQ1
- By effector - Pre-queuosine1
- By pathway - Queuosine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 4 | 1 |
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | 1 | 1 |
| Clostridium phytofermentans ISDg | 1 | 1 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 7 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 7 | 2 |
| Clostridium novyi NT | 6 | 2 |
| Clostridium perfringens ATCC 13124 | 3 | 2 |
| Clostridium difficile 630 | 2 | 1 |
| Clostridium beijerincki NCIMB 8052 | 6 | 2 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium sp. L2-50 | 4 | 1 |
| Clostridium scindens ATCC 35704 | 1 | 1 |
| Clostridium nexile DSM 1787 | 4 | 2 |
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | 2 | 1 |
| Clostridium butyricum 5521 | 1 | 1 |
| Clostridium bolteae ATCC BAA-613 | 1 | 1 |
| Clostridium bartlettii DSM 16795 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| iunH |
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Clostridium perfringens ATCC 13124 Site: position = -375 score = 54.8 sequence = TTTGGTAGAGGTTCG... Gene: CPF_2260: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) |
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Clostridium difficile 630 Site: position = -143 score = 44.26 sequence = CTGTACTTGTTCGAG... Gene: CD1682: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) |
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Clostridium nexile DSM 1787 Site: position = -87 score = 49.69 sequence = CTGGACTGGTTCGAA... Gene: CLONEX_00551: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) |
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Clostridium hiranonis DSM 13275 Site: position = -145 score = 39.35 sequence = TGGGGCTTGTTCGAG... Gene: CLOHIR_00398: preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) |
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preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) |
| qrtT |
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Gene: CPF_2259: Substrate-specific component STY3230 of queuosine-regulated ECF transporter |
Gene: CD1683: Substrate-specific component STY3230 of queuosine-regulated ECF transporter |
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2
Clostridium nexile DSM 1787 Gene: CLONEX_00553: Substrate-specific component STY3230 of queuosine-regulated ECF transporter Gene: CLONEX_00552: Substrate-specific component STY3230 of queuosine-regulated ECF transporter |
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Gene: CLOHIR_00399: Substrate-specific component STY3230 of queuosine-regulated ECF transporter |
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Substrate-specific component STY3230 of queuosine-regulated ECF transporter |
| CRON 2. | |||||||||||||||||||||
| COG1924 |
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Clostridium kluyveri DSM 555 Site: position = -138 score = 25.86 sequence = CAAGACAGTTCGTGA... Gene: CKL_0422: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) |
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Clostridium acetobutylicum ATCC 824 Site: position = -124 score = 18.4 sequence = TAAGACAGTTCGCAA... Gene: CAC3622: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) |
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Clostridium botulinum A str. ATCC 3502 Site: position = -417 score = 23.67 sequence = TAAAGACAGTTCGTA... Gene: CBO1552: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) |
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Clostridium novyi NT Site: position = -155 score = 23.28 sequence = TAAGACAGTTCGTAA... Gene: NT01CX_2382: Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) |
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Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) |
| COG1775 |
Gene: CKL_0423: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
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Gene: CAC3623: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
Gene: CBO1553: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
Gene: NT01CX_2383: Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
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Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB |
| queD |
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Gene: CLOSS21_02601: Queuosine biosynthesis QueD, PTPS-I |
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Gene: CAC3624: Queuosine biosynthesis QueD, PTPS-I |
Gene: CBO1554: Queuosine biosynthesis QueD, PTPS-I |
Gene: NT01CX_2384: Queuosine biosynthesis QueD, PTPS-I |
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Clostridium beijerincki NCIMB 8052 Site: position = -207 score = 18.96 sequence = TACGGACAGTTCATT... Gene: Cbei_2538: Queuosine biosynthesis QueD, PTPS-I |
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Clostridium sp. L2-50 Site: position = -336 score = 15.9 sequence = TGACAGTTCATTAAT... Gene: CLOL250_00654: Queuosine biosynthesis QueD, PTPS-I |
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Gene: CBY_3192: Queuosine biosynthesis QueD, PTPS-I |
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Gene: CLOBAR_00053: Queuosine biosynthesis QueD, PTPS-I |
Queuosine biosynthesis QueD, PTPS-I |
| queE |
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Gene: CLOSS21_02602: Queuosine Biosynthesis QueE Radical SAM |
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Gene: CAC3625: Queuosine Biosynthesis QueE Radical SAM |
Gene: CBO1555: Queuosine Biosynthesis QueE Radical SAM |
Gene: NT01CX_2385: Queuosine Biosynthesis QueE Radical SAM |
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Gene: Cbei_2539: Queuosine Biosynthesis QueE Radical SAM |
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Gene: CLOL250_00655: Queuosine Biosynthesis QueE Radical SAM |
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Gene: CBY_3193: Queuosine Biosynthesis QueE Radical SAM |
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Gene: CLOBAR_00052: Queuosine Biosynthesis QueE Radical SAM |
Queuosine Biosynthesis QueE Radical SAM |
| folE |
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Gene: CLOSS21_02603: GTP cyclohydrolase I (EC 3.5.4.16) type 1 |
Gene: Ccel_1328: GTP cyclohydrolase I (EC 3.5.4.16) type 1 |
Gene: null: GTP cyclohydrolase I (EC 3.5.4.16) type 1 |
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Gene: CAC3626: GTP cyclohydrolase I (EC 3.5.4.16) type 1 |
Gene: CBO1556: GTP cyclohydrolase I (EC 3.5.4.16) type 1 |
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Gene: Cbei_2540: GTP cyclohydrolase I (EC 3.5.4.16) type 1 |
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Gene: CLOL250_00656: GTP cyclohydrolase I (EC 3.5.4.16) type 1 |
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Gene: CBY_3194: GTP cyclohydrolase I (EC 3.5.4.16) type 1 |
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GTP cyclohydrolase I (EC 3.5.4.16) type 1 |
| queC |
Gene: CKL_0424: Queuosine Biosynthesis QueC ATPase |
Gene: CLOSS21_02604: Queuosine Biosynthesis QueC ATPase |
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Gene: CAC3627: Queuosine Biosynthesis QueC ATPase |
Gene: CBO1557: Queuosine Biosynthesis QueC ATPase |
Gene: NT01CX_2386: Queuosine Biosynthesis QueC ATPase |
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Gene: Cbei_2541: Queuosine Biosynthesis QueC ATPase |
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Gene: CLOL250_00657: Queuosine Biosynthesis QueC ATPase |
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Gene: CBY_3195: Queuosine Biosynthesis QueC ATPase |
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Gene: CLOBAR_00051: Queuosine Biosynthesis QueC ATPase |
Queuosine Biosynthesis QueC ATPase |
| queF |
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Gene: CLOSS21_02757: NADPH dependent preQ0 reductase |
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Gene: Cbei_2542: NADPH dependent preQ0 reductase |
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Gene: CLOL250_02871: NADPH dependent preQ0 reductase |
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Gene: CBY_3196: NADPH dependent preQ0 reductase |
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Gene: CLOBAR_00050: NADPH dependent preQ0 reductase |
NADPH dependent preQ0 reductase |
| queT |
Gene: CKL_0425: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium cellulolyticum H10 Site: position = -124 score = 20.83 sequence = AAAAGACAGTTCGTG... Gene: Ccel_1404: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium phytofermentans ISDg Site: position = -55 score = 19.29 sequence = TTAAACCGTGTGTTC... Gene: null: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium tetani E88 Site: position = -52 score = 26.09 sequence = TATGGACAGTTCGTA... Gene: CTC02339: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium acetobutylicum ATCC 824 Site: position = -57 score = 24.52 sequence = ATTTAAGACAGTTCG... Gene: CAC2413: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium botulinum A str. ATCC 3502 Site: position = -54 score = 23.99 sequence = TAATAGACAGTTCGT... Gene: CBO3177: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium novyi NT Site: position = -278 score = 24.37 sequence = AAAGTAGACAGTTCG... Gene: NT01CX_0338: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium perfringens ATCC 13124 Site: position = -254 score = 17.82 sequence = TATATAGACAGTTCG... Gene: CPF_1749: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Gene: CD2097: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium beijerincki NCIMB 8052 Site: position = -272 score = 17.58 sequence = TATAGTCAGTTCGAA... Gene: Cbei_0741: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium sp. OhILAs Site: position = -52 score = 24.49 sequence = TTATGTCAGTTCGCA... Gene: Clos_0047: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium scindens ATCC 35704 Site: position = -57 score = 22.46 sequence = ATGAATCGTGTGTTC... Gene: CLOSCI_01962: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium nexile DSM 1787 Site: position = -55 score = 20.94 sequence = AAAGAGTGTTCGCGA... Gene: CLONEX_03575: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Gene: CLOLEP_02420: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium butyricum 5521 Site: position = -395 score = 17.16 sequence = ATTATAGTCAGTTCG... Gene: CBY_1903: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
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Clostridium bolteae ATCC BAA-613 Site: position = -57 score = 19.79 sequence = GACCGGTGTGTTCGA... Gene: CLOBOL_02330: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Gene: CLOBAR_01974: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |