Regulog T-box(Ser) - Clostridiaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Ser-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - T-box
By effector - Ser-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Clostridium kluyveri DSM 555	2	1
Clostridium sp. SS2/1
Clostridium cellulolyticum H10	1	1
Clostridium phytofermentans ISDg	1	1
Clostridium tetani E88	3	2
Clostridium acetobutylicum ATCC 824	4	1
Clostridium botulinum A str. ATCC 3502	2	2
Clostridium novyi NT	3	2
Clostridium perfringens ATCC 13124	1	1
Clostridium difficile 630	1	1
Clostridium beijerincki NCIMB 8052	1	1
Clostridium sp. OhILAs	1	1
Clostridium sp. L2-50
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275	1	1
Clostridium butyricum 5521	1	1
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																					Function

CRON 1.
yurG	* Clostridium kluyveri DSM 555 Site: position = -299 score = 107.27 sequence = ATATTGTCTTATGAA... Gene: CKL_3817: Serine--pyruvate aminotransferase (EC 2.6.1.51)	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_1188: Serine--pyruvate aminotransferase (EC 2.6.1.51)	Clostridium phytofermentans ISDg	* Clostridium tetani E88 Site: position = -275 score = 118.48 sequence = TTAAAAAGCACTGAA... Gene: CTC00695: Serine--pyruvate aminotransferase (EC 2.6.1.51)	* Clostridium acetobutylicum ATCC 824 Site: position = -376 score = 108.21 sequence = ATAAACCGTTGAAGA... Gene: CAC0014: Serine--pyruvate aminotransferase (EC 2.6.1.51)	Clostridium botulinum A str. ATCC 3502 Gene: CBO1126: Serine--pyruvate aminotransferase (EC 2.6.1.51)	* Clostridium novyi NT Site: position = -352 score = 110.48 sequence = TACAAAAGCTATGAA... Gene: NT01CX_0729: Serine--pyruvate aminotransferase (EC 2.6.1.51)	Clostridium perfringens ATCC 13124 Gene: CPF_0060: Serine--pyruvate aminotransferase (EC 2.6.1.51)	Clostridium difficile 630 Gene: CD0994: Serine--pyruvate aminotransferase (EC 2.6.1.51)	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_01071: Serine--pyruvate aminotransferase (EC 2.6.1.51)	Serine--pyruvate aminotransferase (EC 2.6.1.51)
serA	Clostridium kluyveri DSM 555 Gene: CKL_3816: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_1189: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium phytofermentans ISDg	Clostridium tetani E88 Gene: CTC00694: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium acetobutylicum ATCC 824 Gene: CAC0015: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium botulinum A str. ATCC 3502 Gene: CBO1127: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium novyi NT Gene: NT01CX_0728: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium perfringens ATCC 13124 Gene: CPF_0061: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium difficile 630 Gene: CD0995: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4927: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3791: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_02297: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	Clostridium bartlettii DSM 16795 Gene: CLOBAR_01070: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
CAC0016	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC0016: Related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning
serS	Clostridium kluyveri DSM 555 Gene: CKL_0018: Seryl-tRNA synthetase (EC 6.1.1.11)	Clostridium sp. SS2/1 Gene: CLOSS21_01395: Seryl-tRNA synthetase (EC 6.1.1.11)	* Clostridium cellulolyticum H10 Site: position = -286 score = 96.57 sequence = AAAAACAGCGATTAT... Gene: Ccel_3183: Seryl-tRNA synthetase (EC 6.1.1.11)	* Clostridium phytofermentans ISDg Site: position = -392 score = 97.46 sequence = TCACGGTGATGATAA... Gene: null: Seryl-tRNA synthetase (EC 6.1.1.11)	* Clostridium tetani E88 Site: position = -255 score = 116.32 sequence = ATTGAAACCTATGAA... Gene: CTC00081: Seryl-tRNA synthetase (EC 6.1.1.11)	2 Clostridium acetobutylicum ATCC 824 Gene: CAC0017: Seryl-tRNA synthetase (EC 6.1.1.11) Gene: CAC0021: Seryl-tRNA synthetase (EC 6.1.1.11)	2 Clostridium botulinum A str. ATCC 3502* Site: position = -285 score = 92.74 sequence = AAACAGTGTTGATAA... Gene: CBO0510: Seryl-tRNA synthetase (EC 6.1.1.11) Site: position = -283 score = 131.06 sequence = TAAAACCTGTGAAGA... Gene: CBO0016: Seryl-tRNA synthetase (EC 6.1.1.11)	* Clostridium novyi NT Site: position = -274 score = 120.3 sequence = ATTTAAACCATTGAA... Gene: NT01CX_0848: Seryl-tRNA synthetase (EC 6.1.1.11)	* Clostridium perfringens ATCC 13124 Site: position = -293 score = 115.66 sequence = ATAAACCGTTGATCA... Gene: CPF_0014: Seryl-tRNA synthetase (EC 6.1.1.11)	2 Clostridium difficile 630* Site: position = -330 score = 132.39 sequence = AAAAAGCTGTGAAGG... Gene: CD0014: Seryl-tRNA synthetase (EC 6.1.1.11) Gene: CD2840: Seryl-tRNA synthetase (EC 6.1.1.11)	* Clostridium beijerincki NCIMB 8052 Site: position = -272 score = 104.62 sequence = AAACAGCGATGATAA... Gene: Cbei_1431: Seryl-tRNA synthetase (EC 6.1.1.11)	* Clostridium sp. OhILAs Site: position = -397 score = 129.24 sequence = TTAATGCGAAGAAGA... Gene: Clos_0014: Seryl-tRNA synthetase (EC 6.1.1.11)	Clostridium sp. L2-50 Gene: CLOL250_00973: Seryl-tRNA synthetase (EC 6.1.1.11)	Clostridium scindens ATCC 35704 Gene: CLOSCI_01921: Seryl-tRNA synthetase (EC 6.1.1.11)	Clostridium nexile DSM 1787 Gene: CLONEX_02367: Seryl-tRNA synthetase (EC 6.1.1.11)	Clostridium leptum DSM 753 Gene: CLOLEP_01279: Seryl-tRNA synthetase (EC 6.1.1.11)	* Clostridium hiranonis DSM 13275 Site: position = -343 score = 134.29 sequence = TGAAAAGGCAATGAA... Gene: CLOHIR_02081: Seryl-tRNA synthetase (EC 6.1.1.11)	* Clostridium butyricum 5521 Site: position = -293 score = 80.54 sequence = AATAGGCGTTATTAT... Gene: CBY_1480: Seryl-tRNA synthetase (EC 6.1.1.11)	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04688: Seryl-tRNA synthetase (EC 6.1.1.11)	Clostridium bartlettii DSM 16795 Gene: CLOBAR_02784: Seryl-tRNA synthetase (EC 6.1.1.11)	Seryl-tRNA synthetase (EC 6.1.1.11)