Regulog T-box(Trp) - Clostridiaceae
Regulator type: | RNA regulatory element |
Name: | T-box |
RFAM: | RF00230 |
Regulation mode: | |
Biological process: | Amino acid metabolism |
Effector: | Trp-tRNA |
Phylum: | Firmicutes |

Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - Trp-tRNA
- By pathway - Amino acid metabolism
Genome | Genes | Operons |
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Clostridium kluyveri DSM 555 | 9 | 3 |
Clostridium sp. SS2/1 | 9 | 2 |
Clostridium cellulolyticum H10 | 7 | 1 |
Clostridium phytofermentans ISDg | 2 | 2 |
Clostridium tetani E88 | 1 | 1 |
Clostridium acetobutylicum ATCC 824 | 9 | 3 |
Clostridium botulinum A str. ATCC 3502 | 2 | 2 |
Clostridium novyi NT | 2 | 2 |
Clostridium perfringens ATCC 13124 | 1 | 1 |
Clostridium difficile 630 | 3 | 2 |
Clostridium beijerincki NCIMB 8052 | 8 | 2 |
Clostridium sp. OhILAs | 5 | 3 |
Clostridium sp. L2-50 | 7 | 2 |
Clostridium scindens ATCC 35704 | 3 | 1 |
Clostridium nexile DSM 1787 | 7 | 2 |
Clostridium leptum DSM 753 | 8 | 2 |
Clostridium hiranonis DSM 13275 | 3 | 2 |
Clostridium butyricum 5521 | 4 | 3 |
Clostridium bolteae ATCC BAA-613 | 10 | 2 |
Clostridium bartlettii DSM 16795 | 3 | 3 |
Genes | Function | ||||||||||||||||||||
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CRON 1. | |||||||||||||||||||||
trpP |
*
Clostridium kluyveri DSM 555 Site: position = -314 score = 99.58 sequence = TAAATCCTTTGACGA... Gene: CKL_0804: Substrate-specific component TrpP of tryptophan ECF transporter |
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*
Clostridium tetani E88 Site: position = -375 score = 109.34 sequence = GAAATTCGTTGATAA... Gene: CTC00833: Substrate-specific component TrpP of tryptophan ECF transporter |
*
Clostridium acetobutylicum ATCC 824 Site: position = -382 score = 109.42 sequence = TAAATCCTTTGATAA... Gene: CAC3617: Substrate-specific component TrpP of tryptophan ECF transporter |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -478 score = 105.6 sequence = CTAATTCATTGATAA... Gene: CBO2919: Substrate-specific component TrpP of tryptophan ECF transporter |
*
Clostridium novyi NT Site: position = -383 score = 93.71 sequence = TAAAATCGTGGATCA... Gene: NT01CX_0132: Substrate-specific component TrpP of tryptophan ECF transporter |
Gene: CPF_1504: Substrate-specific component TrpP of tryptophan ECF transporter |
*
Clostridium difficile 630 Site: position = -415 score = 87.45 sequence = ATTAAATCCTATGAC... Gene: CD1988: Substrate-specific component TrpP of tryptophan ECF transporter |
*
Clostridium beijerincki NCIMB 8052 Site: position = -408 score = 103.69 sequence = TAAATCCTATGAAGA... Gene: Cbei_0652: Substrate-specific component TrpP of tryptophan ECF transporter |
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*
Clostridium hiranonis DSM 13275 Site: position = -381 score = 103.76 sequence = AGTAAATTCTTTGAC... Gene: CLOHIR_00214: Substrate-specific component TrpP of tryptophan ECF transporter |
*
Clostridium butyricum 5521 Site: position = -456 score = 92.26 sequence = ATTAAATTCCAGGAA... Gene: CBY_3675: Substrate-specific component TrpP of tryptophan ECF transporter |
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*
Clostridium bartlettii DSM 16795 Site: position = -462 score = 114.79 sequence = TAAATCCTTTGAAGA... Gene: CLOBAR_01747: Substrate-specific component TrpP of tryptophan ECF transporter |
Substrate-specific component TrpP of tryptophan ECF transporter |
CRON 2. | |||||||||||||||||||||
trpB2 |
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Clostridium kluyveri DSM 555 Site: position = -316 score = 109.98 sequence = AAATAAACTGATGAA... Gene: CKL_3062: Tryptophan synthase beta chain like (EC 4.2.1.20) |
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Gene: Ccel_2450: Tryptophan synthase beta chain like (EC 4.2.1.20) |
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Clostridium phytofermentans ISDg Site: position = -446 score = 85.16 sequence = TTTAAAACCGTTGAC... Gene: null: Tryptophan synthase beta chain like (EC 4.2.1.20) |
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*
Clostridium sp. L2-50 Site: position = -481 score = 72.52 sequence = TTAAACCGTTGAAGG... Gene: CLOL250_01451: Tryptophan synthase beta chain like (EC 4.2.1.20) |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_01280: Tryptophan synthase beta chain like (EC 4.2.1.20) Gene: CLOSCI_01281: Tryptophan synthase beta chain like (EC 4.2.1.20) |
*
Clostridium nexile DSM 1787 Site: position = -345 score = 84.61 sequence = AAATAAACCGATGAG... Gene: CLONEX_00452: Tryptophan synthase beta chain like (EC 4.2.1.20) |
*
Clostridium leptum DSM 753 Site: position = -194 score = 100.67 sequence = AGAAACCGTGGAGCA... Gene: CLOLEP_00758: Tryptophan synthase beta chain like (EC 4.2.1.20) |
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*
Clostridium bartlettii DSM 16795 Site: position = -310 score = 97.87 sequence = AATCAAACCGATGAG... Gene: CLOBAR_02812: Tryptophan synthase beta chain like (EC 4.2.1.20) |
Tryptophan synthase beta chain like (EC 4.2.1.20) |
CRON 3. | |||||||||||||||||||||
mtnN |
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*
Clostridium difficile 630 Site: position = -284 score = 86.84 sequence = ATTAAATCCTGAGAT... Gene: CD2611: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
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*
Clostridium hiranonis DSM 13275 Site: position = -262 score = 101.36 sequence = TAAATCCTAAGACTG... Gene: CLOHIR_01115: 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
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5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) |
trpS |
Gene: CKL_0610: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
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Gene: Ccel_1411: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
*
Clostridium phytofermentans ISDg Site: position = -326 score = 108.94 sequence = AGATAAACCGATGAT... Gene: null: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
Gene: CTC02453: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
*
Clostridium acetobutylicum ATCC 824 Site: position = -279 score = 95.27 sequence = TAAAATCGATGAGAA... Gene: CAC0626: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -288 score = 97.24 sequence = TTAATATTTTAAGAA... Gene: CBO3331: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
Gene: NT01CX_1355: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
*
Clostridium perfringens ATCC 13124 Site: position = -345 score = 119.03 sequence = AAATATCAATGACAA... Gene: CPF_0614: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
Gene: CD2610: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
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*
Clostridium sp. OhILAs Site: position = -288 score = 106.87 sequence = TGAAAAAGCAATGAT... Gene: Clos_2123: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
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Gene: CLOSCI_01291: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
Gene: CLONEX_03060: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
Gene: CLOLEP_00284: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
Gene: CLOHIR_01116: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
*
Clostridium butyricum 5521 Site: position = -350 score = 76.52 sequence = AATAAATCCAATGAA... Gene: CBY_3915: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
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*
Clostridium bartlettii DSM 16795 Site: position = -314 score = 106.22 sequence = TAAATCCATTGAGAA... Gene: CLOBAR_00345: Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
Tryptophanyl-tRNA synthetase (EC 6.1.1.2) ## proteobacterial type |
CRON 4. | |||||||||||||||||||||
trpE |
*
Clostridium kluyveri DSM 555 Site: position = -366 score = 89.95 sequence = TAAATCCTATGAGCA... Gene: CKL_1274: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Clostridium sp. SS2/1 Site: position = -406 score = 73.21 sequence = GATAAATCCGATGAA... Gene: CLOSS21_01327: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Clostridium cellulolyticum H10 Site: position = -334 score = 81.96 sequence = TTAAACCGTTGATGT... Gene: Ccel_3213: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
Gene: null: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
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*
Clostridium acetobutylicum ATCC 824 Site: position = -395 score = 100.36 sequence = ATACAAGTCTGTGAA... Gene: CAC3163: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
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Clostridium beijerincki NCIMB 8052 Site: position = -193 score = 19.12 sequence = AATATAGAGTTAGAA... Gene: Cbei_1749: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
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*
Clostridium sp. L2-50 Site: position = -382 score = 91.92 sequence = AAACAAACCAATGAG... Gene: CLOL250_01008: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
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*
Clostridium nexile DSM 1787 Site: position = -394 score = 84.26 sequence = CGTCAAACCGTTGAA... Gene: CLONEX_03129: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Clostridium leptum DSM 753 Site: position = -453 score = 88.9 sequence = ATTCAAACCGTTGAA... Gene: CLOLEP_01664: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
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*
Clostridium butyricum 5521 Site: position = -130 score = 22.66 sequence = AAATTTGGGTGGCAC... Gene: CBY_1065: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
*
Clostridium bolteae ATCC BAA-613 Site: position = -486 score = 68.94 sequence = TAAAAAACTGTTGAG... Gene: CLOBOL_04492: Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
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Anthranilate synthase, aminase component (EC 4.1.3.27) # TrpAa |
trpG |
Gene: CKL_1275: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
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Gene: Ccel_3214: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
Gene: null: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
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Gene: CAC3162: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
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Gene: Cbei_1750: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
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Gene: CLOL250_01007: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
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Gene: CLONEX_03128: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
Gene: CLOLEP_01663: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
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Gene: CBY_1064: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
Gene: CLOBOL_04491: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
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Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) # TrpAb@PabAb |
trpD |
Gene: CKL_1276: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: CLOSS21_01326: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: Ccel_3215: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: null: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
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Gene: CAC3161: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
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Gene: Cbei_1751: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
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Gene: CLOL250_01006: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
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Gene: CLONEX_03127: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
Gene: CLOLEP_01662: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
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Gene: CLOBOL_04490: Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
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Anthranilate phosphoribosyltransferase (EC 2.4.2.18) |
trpC |
Gene: CKL_1277: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: CLOSS21_01325: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: Ccel_3216: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
Gene: null: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
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Gene: CAC3160: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
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Gene: Cbei_1752: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
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Gene: CLOL250_01005: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
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Gene: CLONEX_03126: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
2
Clostridium leptum DSM 753 Gene: CLOLEP_01661: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) Gene: CLOLEP_00737: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
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Gene: CLOBOL_04489: Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
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Indole-3-glycerol phosphate synthase (EC 4.1.1.48) |
trpF |
Gene: CKL_1278: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: CLOSS21_01324: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: Ccel_3217: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: null: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
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Gene: CAC3159: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
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Gene: Cbei_1753: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
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Gene: CLOL250_01072: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
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Gene: CLOLEP_01660: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
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Gene: CBY_1868: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
Gene: CLOBOL_04488: Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
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Phosphoribosylanthranilate isomerase (EC 5.3.1.24) |
trpB |
Gene: CKL_1279: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: CLOSS21_01323: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: Ccel_3218: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: null: Tryptophan synthase beta chain (EC 4.2.1.20) |
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Gene: CAC3158: Tryptophan synthase beta chain (EC 4.2.1.20) |
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*
Clostridium novyi NT Site: position = -375 score = 60.15 sequence = ACAAGTCATTGACTG... Gene: NT01CX_1342: Tryptophan synthase beta chain (EC 4.2.1.20) |
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Gene: Cbei_1754: Tryptophan synthase beta chain (EC 4.2.1.20) |
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Gene: CLOL250_01004: Tryptophan synthase beta chain (EC 4.2.1.20) |
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Gene: CLONEX_03125: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: CLOLEP_01659: Tryptophan synthase beta chain (EC 4.2.1.20) |
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2
Clostridium butyricum 5521 Gene: CBY_0407: Tryptophan synthase beta chain (EC 4.2.1.20) Gene: CBY_1867: Tryptophan synthase beta chain (EC 4.2.1.20) |
Gene: CLOBOL_04487: Tryptophan synthase beta chain (EC 4.2.1.20) |
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Tryptophan synthase beta chain (EC 4.2.1.20) |
trpA |
Gene: CKL_1280: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: CLOSS21_01322: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: Ccel_3219: Tryptophan synthase alpha chain (EC 4.2.1.20) |
2
Clostridium phytofermentans ISDg Gene: null: Tryptophan synthase alpha chain (EC 4.2.1.20) Gene: null: Tryptophan synthase alpha chain (EC 4.2.1.20) |
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Gene: CAC3157: Tryptophan synthase alpha chain (EC 4.2.1.20) |
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Gene: Cbei_1755: Tryptophan synthase alpha chain (EC 4.2.1.20) |
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Gene: CLOL250_01003: Tryptophan synthase alpha chain (EC 4.2.1.20) |
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Gene: CLONEX_03124: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: CLOLEP_01658: Tryptophan synthase alpha chain (EC 4.2.1.20) |
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Gene: CBY_0406: Tryptophan synthase alpha chain (EC 4.2.1.20) |
Gene: CLOBOL_04486: Tryptophan synthase alpha chain (EC 4.2.1.20) |
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Tryptophan synthase alpha chain (EC 4.2.1.20) |
CRON 5. | |||||||||||||||||||||
trpX |
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Gene: CBO0670: ABC transporter substrate-binding protein |
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2
Clostridium difficile 630 Gene: CD0876: ABC transporter substrate-binding protein Gene: CD0873: ABC transporter substrate-binding protein |
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*2
Clostridium sp. OhILAs Site: position = -346 score = 120.75 sequence = TAAAGGCGTTGACGG... Gene: Clos_2702: ABC transporter substrate-binding protein Site: position = -340 score = 111.76 sequence = TAAAAGCGTTGATGA... Gene: Clos_2705: ABC transporter substrate-binding protein |
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Gene: CLOHIR_00130: ABC transporter substrate-binding protein |
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ABC transporter substrate-binding protein |
trpY |
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Gene: CBO0668: ABC transporter, permease protein |
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2
Clostridium difficile 630 Gene: CD0878: ABC transporter, permease protein Gene: CD0875: ABC transporter, permease protein |
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Gene: Clos_2703: ABC transporter, permease protein |
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Gene: CLOHIR_00132: ABC transporter, permease protein |
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ABC transporter, permease protein |
trpZ |
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Gene: CBO0669: ABC transporter, ATP-binding protein |
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2
Clostridium difficile 630 Gene: CD0877: ABC transporter, ATP-binding protein Gene: CD0874: ABC transporter, ATP-binding protein |
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Gene: Clos_2704: ABC transporter, ATP-binding protein |
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Gene: CLOHIR_00131: ABC transporter, ATP-binding protein |
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ABC transporter, ATP-binding protein |
CRON 6. | |||||||||||||||||||||
trpX |
Gene: CKL_0621: ABC transporter substrate-binding protein |
*
Clostridium sp. SS2/1 Site: position = -308 score = 117.19 sequence = AGAAACCGTTGAGAA... Gene: CLOSS21_02587: ABC transporter substrate-binding protein |
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Gene: CBO1162: ABC transporter substrate-binding protein |
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Gene: Cbei_1079: ABC transporter substrate-binding protein |
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Clostridium scindens ATCC 35704 Site: position = -321 score = 98.85 sequence = TAAAACCGTTGAGAA... Gene: CLOSCI_01265: ABC transporter substrate-binding protein |
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Gene: CBY_2641: ABC transporter substrate-binding protein |
*
Clostridium bolteae ATCC BAA-613 Site: position = -370 score = 107.93 sequence = TTAAACCGTAGAGAA... Gene: CLOBOL_01967: ABC transporter substrate-binding protein |
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ABC transporter substrate-binding protein |
trpY |
Gene: CKL_0620: ABC transporter integral membrane protein |
Gene: CLOSS21_02588: ABC transporter integral membrane protein |
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Gene: CBO1163: ABC transporter integral membrane protein |
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Gene: Cbei_1080: ABC transporter integral membrane protein |
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Gene: CLOSCI_01266: ABC transporter integral membrane protein |
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Gene: CBY_2640: ABC transporter integral membrane protein |
Gene: CLOBOL_01968: ABC transporter integral membrane protein |
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ABC transporter integral membrane protein |
trpZ |
Gene: CKL_0619: ABC transporter, ATP-binding protein |
Gene: CLOSS21_02589: ABC transporter, ATP-binding protein |
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Gene: CBO1164: ABC transporter, ATP-binding protein |
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Gene: Cbei_1081: ABC transporter, ATP-binding protein |
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Gene: CLOSCI_01267: ABC transporter, ATP-binding protein |
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Gene: CBY_2639: ABC transporter, ATP-binding protein |
Gene: CLOBOL_01969: ABC transporter, ATP-binding protein |
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ABC transporter, ATP-binding protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |