Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog THF - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: THF
RFAM: RF01831
Regulation mode:
Biological process: Folate metabolism
Effector: Tetrahydrofolate
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium beijerincki NCIMB 8052
Clostridium difficile 630
Clostridium perfringens ATCC 13124
Clostridium novyi NT 1 1
Clostridium botulinum A str. ATCC 3502 1 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium tetani E88 1 1
Clostridium phytofermentans ISDg
Clostridium cellulolyticum H10 1 1
Clostridium kluyveri DSM 555 2 2
Clostridium sp. OhILAs 1 1
Clostridium bartlettii DSM 16795
Clostridium butyricum 5521
Clostridium hiranonis DSM 13275
Clostridium leptum DSM 753
Clostridium nexile DSM 1787 1 1
Clostridium scindens ATCC 35704 1 1
Clostridium sp. L2-50
Clostridium sp. SS2/1
Clostridium bolteae ATCC BAA-613 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
folT
 
Clostridium beijerincki NCIMB 8052
 
Clostridium difficile 630
 
Clostridium perfringens ATCC 13124
*
Clostridium novyi NT

Site:
position = -170
score = 90.73
sequence = AGGCAGAGTAGGTAT...

Gene: NT01CX_2426: Substrate-specific component FolT of folate ECF transporter
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -195
score = 70.54
sequence = ACAGAGTAGGTAATC...

Gene: CBO0790: Substrate-specific component FolT of folate ECF transporter
*
Clostridium acetobutylicum ATCC 824

Site:
position = -222
score = 75.05
sequence = GCAGAGTAGATATTG...

Gene: CAC2418: Substrate-specific component FolT of folate ECF transporter
*
Clostridium tetani E88

Site:
position = -158
score = 69.98
sequence = AGTTAGAGTAGGTGA...

Gene: CTC01689: Substrate-specific component FolT of folate ECF transporter
 
Clostridium phytofermentans ISDg

Gene: Cphy_2765 (deprecated): Substrate-specific component FolT of folate ECF transporter
*
Clostridium cellulolyticum H10

Site:
position = -198
score = 97.88
sequence = GCAGAGTAGATTTTT...

Gene: Ccel_1395: Substrate-specific component FolT of folate ECF transporter
*2
Clostridium kluyveri DSM 555

Site:
position = -262
score = 82.42
sequence = GCAGAGTAGAACGTT...

Gene: CKL_3856: Substrate-specific component FolT of folate ECF transporter

Site:
position = -256
score = 62.62
sequence = GCAGAGTAAATATTA...

Gene: CKL_1477: Substrate-specific component FolT of folate ECF transporter
*
Clostridium sp. OhILAs

Site:
position = -172
score = 81.12
sequence = TCAGAGTAGATATTG...

Gene: Clos_2421: Substrate-specific component FolT of folate ECF transporter
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01235: Substrate-specific component FolT of folate ECF transporter
 
Clostridium butyricum 5521
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00639: Substrate-specific component FolT of folate ECF transporter
 
Clostridium leptum DSM 753
*
Clostridium nexile DSM 1787

Site:
position = -106
score = 100.51
sequence = AAGCAGAGTAAGAGT...

Gene: CLONEX_03228: Substrate-specific component FolT of folate ECF transporter
*
Clostridium scindens ATCC 35704

Site:
position = -174
score = 101.16
sequence = GCAGAGTAGGAAAAC...

Gene: CLOSCI_01152: Substrate-specific component FolT of folate ECF transporter
 
Clostridium sp. L2-50
 
Clostridium sp. SS2/1
*2
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_06884: Substrate-specific component FolT of folate ECF transporter

Site:
position = -346
score = 86.32
sequence = GCAGAGTAGGTATAT...

Gene: CLOBOL_05170: Substrate-specific component FolT of folate ECF transporter
Substrate-specific component FolT of folate ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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