Regulog THF - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | THF |
| RFAM: | RF01831 |
| Regulation mode: | |
| Biological process: | Folate metabolism |
| Effector: | Tetrahydrofolate |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - THF
- By effector - Tetrahydrofolate
- By pathway - Folate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium beijerincki NCIMB 8052 | ||
| Clostridium difficile 630 | ||
| Clostridium perfringens ATCC 13124 | ||
| Clostridium novyi NT | 1 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 1 | 1 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium phytofermentans ISDg | ||
| Clostridium cellulolyticum H10 | 1 | 1 |
| Clostridium kluyveri DSM 555 | 2 | 2 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium bartlettii DSM 16795 | ||
| Clostridium butyricum 5521 | ||
| Clostridium hiranonis DSM 13275 | ||
| Clostridium leptum DSM 753 | ||
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium scindens ATCC 35704 | 1 | 1 |
| Clostridium sp. L2-50 | ||
| Clostridium sp. SS2/1 | ||
| Clostridium bolteae ATCC BAA-613 | 1 | 1 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| folT |
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*
Clostridium novyi NT Site: position = -170 score = 90.73 sequence = AGGCAGAGTAGGTAT... Gene: NT01CX_2426: Substrate-specific component FolT of folate ECF transporter |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -195 score = 70.54 sequence = ACAGAGTAGGTAATC... Gene: CBO0790: Substrate-specific component FolT of folate ECF transporter |
*
Clostridium acetobutylicum ATCC 824 Site: position = -222 score = 75.05 sequence = GCAGAGTAGATATTG... Gene: CAC2418: Substrate-specific component FolT of folate ECF transporter |
*
Clostridium tetani E88 Site: position = -158 score = 69.98 sequence = AGTTAGAGTAGGTGA... Gene: CTC01689: Substrate-specific component FolT of folate ECF transporter |
Gene: Cphy_2765 (deprecated): Substrate-specific component FolT of folate ECF transporter |
*
Clostridium cellulolyticum H10 Site: position = -198 score = 97.88 sequence = GCAGAGTAGATTTTT... Gene: Ccel_1395: Substrate-specific component FolT of folate ECF transporter |
*2
Clostridium kluyveri DSM 555 Site: position = -262 score = 82.42 sequence = GCAGAGTAGAACGTT... Gene: CKL_3856: Substrate-specific component FolT of folate ECF transporter Site: position = -256 score = 62.62 sequence = GCAGAGTAAATATTA... Gene: CKL_1477: Substrate-specific component FolT of folate ECF transporter |
*
Clostridium sp. OhILAs Site: position = -172 score = 81.12 sequence = TCAGAGTAGATATTG... Gene: Clos_2421: Substrate-specific component FolT of folate ECF transporter |
Gene: CLOBAR_01235: Substrate-specific component FolT of folate ECF transporter |
|
Gene: CLOHIR_00639: Substrate-specific component FolT of folate ECF transporter |
|
*
Clostridium nexile DSM 1787 Site: position = -106 score = 100.51 sequence = AAGCAGAGTAAGAGT... Gene: CLONEX_03228: Substrate-specific component FolT of folate ECF transporter |
*
Clostridium scindens ATCC 35704 Site: position = -174 score = 101.16 sequence = GCAGAGTAGGAAAAC... Gene: CLOSCI_01152: Substrate-specific component FolT of folate ECF transporter |
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*2
Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_06884: Substrate-specific component FolT of folate ECF transporter Site: position = -346 score = 86.32 sequence = GCAGAGTAGGTATAT... Gene: CLOBOL_05170: Substrate-specific component FolT of folate ECF transporter |
Substrate-specific component FolT of folate ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |