Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Clostridium beijerincki NCIMB 8052

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AgaR N-acetylgalactosamine utilization 5 5
TF AraR Arabinose Arabinose utilization 8 10
TF ArgR Arginine Arginine biosynthesis 4 7
TF BirA Biotin Biotin biosynthesis 3 2
TF Cbei_4343 Multidrug resistance; Multidrug efflux 1 1
TF CcpA HPr, phosphocarrier protein Carbohydrate metabolism 120 94
TF CymR Cysteine metabolism 7 4
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 1 1
TF ExuR Galacturonate Galacturonate utilization 2 3
TF HcpR Nitric oxide Nitrosative stress response 6 5
TF HrcA Heat shock Heat shock response 3 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 4 2
TF LexA DNA damage SOS response 5 6
TF MalR1 Maltose Maltose utilization; Maltodextrin utilization 1 1
TF MalR2 Maltose Maltose utilization; Maltodextrin utilization 3 4
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 3 2
TF NiaR Niacin NAD biosynthesis 3 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 3 4
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 2 1
TF PdxQ Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF Rex NADH Energy metabolism 23 14
TF ScrR Sucrose-6-phosphate Sucrose utilization 1 1
TF SdaR D-glycerate Glycerate utilization 2 1
TF TreR Trehalose-6-phosphate Trehalose utilization 2 2
TF XylR Xylose Xylose utilization 11 11
TF YcxD Multidrug efflux 1 1
TF YdfD/YisV Metabolite transport 1 1
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YtrA Multidrug resistance; Multidrug efflux; Antibiotic resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 10 7
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 10 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 2
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 8 4
RNA Glycine Glycine Glycine metabolism 5 4
RNA L10_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 7 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 2
RNA Purine Adenine; Guanine Purine metabolism 6 4
RNA PyrR PyrR Pyrimidine metabolism 4 3
RNA SAM S-adenosylmethionine Methionine biosynthesis 16 5
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 2 2
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 5 2
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 3 1
RNA T-box(Cys) Cys-tRNA Amino acid metabolism 6 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 4 2
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 2 1
RNA T-box(Lys) Lys-tRNA Amino acid metabolism 2 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 2 1
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Pro) Pro-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 1
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 2 2
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 4 2
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 2 1
RNA T-box(Val) Val-tRNA Amino acid metabolism 3 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 5 4
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ydaO-yuaA Cell wall metabolism; Osmotic stress response 4 2
RNA ykkC-yxkD Multidrug resistance 3 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 3 1
RNA yybP-ykoY 5 4
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