Regulon of XylR in Clostridium beijerincki NCIMB 8052

Properties
Regulator type:	Transcription factor
TF locus tag:	Cbei_2385
Regulator family:	ROK
Regulation mode:	repressor
Biological process:	Xylose utilization
Effector:	Xylose
Regulog:	XylR - Clostridia-1
Statistics of regulated genes:
- Genes	15
- Operons	9
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 20 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By TF family - ROK
By effector - Xylose
By pathway - Xylose utilization

Regulated operons
	Locus Tag	Name	Function
Position: -95 Score: 5.5 Sequence: AGTTTATAAAGGAAAGTTAAGAATA Locus tag: Cbei_4126 Name: xynB Funciton: Beta-xylosidase (EC 3.2.1.37)
	Cbei_4126	xynB	Beta-xylosidase (EC 3.2.1.37)
Position: -78 Score: 5.9 Sequence: CATTATTAAAGGACATTTTAAAAGT Locus tag: Cbei_2377 Name: xylF1 Funciton: Predicted beta-xyloside ABC transporter, substrate-binding component Locus tag: Cbei_2378 Name: Cbei_2378 Funciton: Two-component sensor histidine kinase Locus tag: Cbei_2379 Name: Cbei_2379 Funciton: Two-component response regulator yesN Locus tag: Cbei_2380 Name: xylF Funciton: Xylose ABC transporter, periplasmic xylose-binding protein XylF Locus tag: Cbei_2381 Name: xylG Funciton: D-xylose transport ATP-binding protein XylG Locus tag: Cbei_2382 Name: xylH Funciton: Xylose ABC transporter, permease protein XylH
	Cbei_2377	xylF1	Predicted beta-xyloside ABC transporter, substrate-binding component
	Cbei_2378	Cbei_2378	Two-component sensor histidine kinase
	Cbei_2379	Cbei_2379	Two-component response regulator yesN
	Cbei_2380	xylF	Xylose ABC transporter, periplasmic xylose-binding protein XylF
	Cbei_2381	xylG	D-xylose transport ATP-binding protein XylG
	Cbei_2382	xylH	Xylose ABC transporter, permease protein XylH
Position: -259 Score: 6.5 Sequence: ACTTATCAAACAACATTTAAAAAGT Locus tag: Cbei_4681 Name: xylA-II Funciton: novel Xylose isomerase (EC 5.3.1.5)
	Cbei_4681	xylA-II	novel Xylose isomerase (EC 5.3.1.5)
Position: -132 Score: 5.8 Sequence: AATTATTAAAAGATATGTATAAAGA Locus tag: Cbei_2388 Name: CAC2611 Funciton: hypothetical protein
	Cbei_2388	CAC2611	hypothetical protein
Position: -393 Score: 6.1 Sequence: ACTTTTTAAATTACTTTTTAAAGTT Position: -381 Score: 6.3 Sequence: ACTTTTTAAAGTTTATTGAAAAAGG Locus tag: Cbei_0109 Name: xylT Funciton: D-xylose proton-symporter XylT
	Cbei_0109	xylT	D-xylose proton-symporter XylT
Position: -281 Score: 6.2 Sequence: ACTTATAAAATAACATTTAAAAAGT Locus tag: Cbei_2383 Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
	Cbei_2383	xylA	Xylose isomerase (EC 5.3.1.5)
Position: -314 Score: 6.6 Sequence: ACTTATTAAATAAATTTTTAAAATA Position: -302 Score: 6.2 Sequence: AATTTTTAAAATATATTTTTAAAGT Locus tag: Cbei_2386 Name: tal Funciton: Transaldolase (EC 2.2.1.2)
	Cbei_2386	tal	Transaldolase (EC 2.2.1.2)
Position: -98 Score: 7.1 Sequence: ACTTATTAAAATACATTTAAAAAGT Locus tag: Cbei_2384 Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) Locus tag: Cbei_2385 Name: xylR Funciton: Xylose repressor XylR, ROK family
	Cbei_2384	xylB	Xylulose kinase (EC 2.7.1.17)
	Cbei_2385	xylR	Xylose repressor XylR, ROK family
Position: -121 Score: 5.3 Sequence: AATTATTAAATAAACTATAAGAATA Locus tag: Cbei_2389 Name: xylA-II Funciton: novel Xylose isomerase (EC 5.3.1.5)
	Cbei_2389	xylA-II	novel Xylose isomerase (EC 5.3.1.5)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of XylR in Clostridium beijerincki NCIMB 8052

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --