Regulon of XylR in Clostridium beijerincki NCIMB 8052
| Regulator type: | Transcription factor |
| TF locus tag: | Cbei_2385 |
| Regulator family: | ROK |
| Regulation mode: | repressor |
| Biological process: | Xylose utilization |
| Effector: | Xylose |
| Regulog: | XylR - Clostridia-1 |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - ROK
- By effector - Xylose
- By pathway - Xylose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -95
Score: 5.5 Sequence: AGTTTATAAAGGAAAGTTAAGAATA
Locus tag: Cbei_4126
Name: xynB Funciton: Beta-xylosidase (EC 3.2.1.37) |
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xynB
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Beta-xylosidase (EC 3.2.1.37)
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Position: -78
Score: 5.9 Sequence: CATTATTAAAGGACATTTTAAAAGT
Locus tag: Cbei_2377
Name: xylF1 Funciton: Predicted beta-xyloside ABC transporter, substrate-binding component
Locus tag: Cbei_2378
Name: Cbei_2378 Funciton: Two-component sensor histidine kinase
Locus tag: Cbei_2379
Name: Cbei_2379 Funciton: Two-component response regulator yesN
Locus tag: Cbei_2380
Name: xylF Funciton: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Locus tag: Cbei_2381
Name: xylG Funciton: D-xylose transport ATP-binding protein XylG
Locus tag: Cbei_2382
Name: xylH Funciton: Xylose ABC transporter, permease protein XylH |
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xylF1
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Predicted beta-xyloside ABC transporter, substrate-binding component
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Cbei_2378
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Two-component sensor histidine kinase
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Cbei_2379
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Two-component response regulator yesN
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xylF
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Xylose ABC transporter, periplasmic xylose-binding protein XylF
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xylG
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D-xylose transport ATP-binding protein XylG
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xylH
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Xylose ABC transporter, permease protein XylH
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Position: -259
Score: 6.5 Sequence: ACTTATCAAACAACATTTAAAAAGT
Locus tag: Cbei_4681
Name: xylA-II Funciton: novel Xylose isomerase (EC 5.3.1.5) |
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xylA-II
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novel Xylose isomerase (EC 5.3.1.5)
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Position: -132
Score: 5.8 Sequence: AATTATTAAAAGATATGTATAAAGA
Locus tag: Cbei_2388
Name: CAC2611 Funciton: hypothetical protein |
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CAC2611
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hypothetical protein
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Position: -393
Score: 6.1 Sequence: ACTTTTTAAATTACTTTTTAAAGTT
Position: -381
Score: 6.3 Sequence: ACTTTTTAAAGTTTATTGAAAAAGG
Locus tag: Cbei_0109
Name: xylT Funciton: D-xylose proton-symporter XylT |
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xylT
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D-xylose proton-symporter XylT
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Position: -281
Score: 6.2 Sequence: ACTTATAAAATAACATTTAAAAAGT
Locus tag: Cbei_2383
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5) |
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xylA
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Xylose isomerase (EC 5.3.1.5)
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Position: -314
Score: 6.6 Sequence: ACTTATTAAATAAATTTTTAAAATA
Position: -302
Score: 6.2 Sequence: AATTTTTAAAATATATTTTTAAAGT
Locus tag: Cbei_2386
Name: tal Funciton: Transaldolase (EC 2.2.1.2) |
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tal
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Transaldolase (EC 2.2.1.2)
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Position: -98
Score: 7.1 Sequence: ACTTATTAAAATACATTTAAAAAGT
Locus tag: Cbei_2384
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17)
Locus tag: Cbei_2385
Name: xylR Funciton: Xylose repressor XylR, ROK family |
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xylB
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Xylulose kinase (EC 2.7.1.17)
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xylR
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Xylose repressor XylR, ROK family
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Position: -121
Score: 5.3 Sequence: AATTATTAAATAAACTATAAGAATA
Locus tag: Cbei_2389
Name: xylA-II Funciton: novel Xylose isomerase (EC 5.3.1.5) |
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xylA-II
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novel Xylose isomerase (EC 5.3.1.5)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |