Regulog XylR - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | ROK |
| Regulation mode: | repressor |
| Biological process: | Xylose utilization |
| Effector: | Xylose |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - ROK
- By effector - Xylose
- By pathway - Xylose utilization
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | 6 | 4 |
| Clostridium beijerincki NCIMB 8052 | 15 | 9 |
| Clostridium botulinum A str. ATCC 3502 | ||
| Clostridium butyricum 5521 | 6 | 3 |
| Clostridium kluyveri DSM 555 | ||
| Clostridium novyi NT | ||
| Clostridium perfringens ATCC 13124 | ||
| Clostridium tetani E88 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| xylF1 |
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Clostridium beijerincki NCIMB 8052 Site: position = -78 score = 5.92116 sequence = CATTATTAAAGGACATTTTAAAAGT Gene: Cbei_2377: Predicted beta-xyloside ABC transporter, substrate-binding component |
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Predicted beta-xyloside ABC transporter, substrate-binding component |
| Cbei_2378 |
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Gene: Cbei_2378: Two-component sensor histidine kinase |
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Two-component sensor histidine kinase |
| Cbei_2379 |
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Gene: Cbei_2379: Two-component response regulator yesN |
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Two-component response regulator yesN |
| xylF |
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Gene: Cbei_2380: Xylose ABC transporter, periplasmic xylose-binding protein XylF |
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Xylose ABC transporter, periplasmic xylose-binding protein XylF |
| xylG |
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Gene: Cbei_2381: D-xylose transport ATP-binding protein XylG |
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D-xylose transport ATP-binding protein XylG |
| xylH |
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Gene: Cbei_2382: Xylose ABC transporter, permease protein XylH |
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Xylose ABC transporter, permease protein XylH |
| CRON 2. | |||||||||
| xylA |
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Clostridium beijerincki NCIMB 8052 Site: position = -281 score = 6.22881 sequence = ACTTATAAAATAACATTTAAAAAGT Gene: Cbei_2383: Xylose isomerase (EC 5.3.1.5) |
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Xylose isomerase (EC 5.3.1.5) |
| CRON 3. | |||||||||
| xylT |
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Clostridium beijerincki NCIMB 8052 Site: position = -393 score = 6.11328 sequence = ACTTTTTAAATTACTTTTTAAAGTT Site: position = -381 score = 6.29536 sequence = ACTTTTTAAAGTTTATTGAAAAAGG Gene: Cbei_0109: D-xylose proton-symporter XylT |
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D-xylose proton-symporter XylT |
| CRON 4. | |||||||||
| xynT |
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Clostridium acetobutylicum ATCC 824 Site: position = -96 score = 7.05893 sequence = ACTTTTTAAAGTGCTTTTTAAAAGT Site: position = -84 score = 5.60773 sequence = GCTTTTTAAAAGTTATTGAAAAAGT Gene: CAC3451: Xyloside transporter XynT |
Gene: Cbei_4125: Xyloside transporter XynT |
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Xyloside transporter XynT |
| xynB |
Gene: CAC3452: Beta-xylosidase (EC 3.2.1.37) |
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Clostridium beijerincki NCIMB 8052 Site: position = -95 score = 5.47103 sequence = AGTTTATAAAGGAAAGTTAAGAATA Gene: Cbei_4126: Beta-xylosidase (EC 3.2.1.37) |
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Beta-xylosidase (EC 3.2.1.37) |
| CRON 5. | |||||||||
| tal |
Gene: CAC1347: Transaldolase (EC 2.2.1.2) |
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Clostridium beijerincki NCIMB 8052 Site: position = -314 score = 6.62997 sequence = ACTTATTAAATAAATTTTTAAAATA Site: position = -302 score = 6.21794 sequence = AATTTTTAAAATATATTTTTAAAGT Gene: Cbei_2386: Transaldolase (EC 2.2.1.2) |
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Clostridium butyricum 5521 Site: position = -70 score = 6.37195 sequence = ACTTATTAAATATATTTTTAAAAGA Gene: CBY_2344: Transaldolase (EC 2.2.1.2) |
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Transaldolase (EC 2.2.1.2) |
| tkt |
Gene: CAC1348: Transketolase (EC 2.2.1.1) |
Gene: Cbei_4644: Transketolase (EC 2.2.1.1) |
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Gene: CBY_2345: Transketolase (EC 2.2.1.1) |
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Transketolase (EC 2.2.1.1) |
| CRON 6. | |||||||||
| CAC2611 |
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Clostridium acetobutylicum ATCC 824 Site: position = -109 score = 7.1079 sequence = ACTTATTAAACAAACTTTAAAAACA Gene: CAC2611: hypothetical protein |
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Clostridium beijerincki NCIMB 8052 Site: position = -132 score = 5.75022 sequence = AATTATTAAAAGATATGTATAAAGA Gene: Cbei_2388: hypothetical protein |
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Clostridium butyricum 5521 Site: position = -87 score = 7.1079 sequence = ACTTATTAAAATACATTTAAAAAGT Gene: CBY_2380: hypothetical protein |
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hypothetical protein |
| xylA-II |
Gene: CAC2610: novel Xylose isomerase (EC 5.3.1.5) |
*2
Clostridium beijerincki NCIMB 8052 Site: position = -121 score = 5.29981 sequence = AATTATTAAATAAACTATAAGAATA Gene: Cbei_2389: novel Xylose isomerase (EC 5.3.1.5) Site: position = -259 score = 6.48682 sequence = ACTTATCAAACAACATTTAAAAAGT Gene: Cbei_4681: novel Xylose isomerase (EC 5.3.1.5) |
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Gene: CBY_2379: novel Xylose isomerase (EC 5.3.1.5) |
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novel Xylose isomerase (EC 5.3.1.5) |
| CRON 7. | |||||||||
| xylB |
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Clostridium acetobutylicum ATCC 824 Site: position = -50 score = 7.17446 sequence = ACTTATTAAAGGATATTTAAAAAGT Gene: CAC2612: Xylulose kinase (EC 2.7.1.17) |
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Clostridium beijerincki NCIMB 8052 Site: position = -98 score = 7.1079 sequence = ACTTATTAAAATACATTTAAAAAGT Gene: Cbei_2384: Xylulose kinase (EC 2.7.1.17) |
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Clostridium butyricum 5521 Site: position = -80 score = 5.62439 sequence = ACATTTAAAAAGAATTTTAATAATT Site: position = -92 score = 7.1079 sequence = ACTTATTAAAATACATTTAAAAAGA Gene: CBY_2342: Xylulose kinase (EC 2.7.1.17) |
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Xylulose kinase (EC 2.7.1.17) |
| xylR |
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Clostridium acetobutylicum ATCC 824 Site: position = -97 score = 6.80119 sequence = ACTTTATAAAACAACTTTATAAAGG Gene: CAC3673: Xylose repressor XylR, ROK family |
Gene: Cbei_2385: Xylose repressor XylR, ROK family |
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Gene: CBY_2343: Xylose repressor XylR, ROK family |
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Xylose repressor XylR, ROK family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |