Regulog XylR - Clostridia-1

Properties
Regulator type:	Transcription factor
Regulator family:	ROK
Regulation mode:	repressor
Biological process:	Xylose utilization
Effector:	Xylose
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 20 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By TF family - ROK
By effector - Xylose
By pathway - Xylose utilization

Statistics of regulated genes
Genome	Genes	Operons
Clostridium acetobutylicum ATCC 824	6	4
Clostridium beijerincki NCIMB 8052	15	9
Clostridium botulinum A str. ATCC 3502
Clostridium butyricum 5521	6	3
Clostridium kluyveri DSM 555
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium tetani E88

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
xylF1	Clostridium acetobutylicum ATCC 824	* Clostridium beijerincki NCIMB 8052 Site: position = -78 score = 5.92116 sequence = CATTATTAAAGGACATTTTAAAAGT Gene: Cbei_2377: Predicted beta-xyloside ABC transporter, substrate-binding component	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Predicted beta-xyloside ABC transporter, substrate-binding component
Cbei_2378	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2378: Two-component sensor histidine kinase	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Two-component sensor histidine kinase
Cbei_2379	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2379: Two-component response regulator yesN	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Two-component response regulator yesN
xylF	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2380: Xylose ABC transporter, periplasmic xylose-binding protein XylF	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Xylose ABC transporter, periplasmic xylose-binding protein XylF
xylG	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2381: D-xylose transport ATP-binding protein XylG	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	D-xylose transport ATP-binding protein XylG
xylH	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2382: Xylose ABC transporter, permease protein XylH	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Xylose ABC transporter, permease protein XylH

CRON 2.
xylA	Clostridium acetobutylicum ATCC 824	* Clostridium beijerincki NCIMB 8052 Site: position = -281 score = 6.22881 sequence = ACTTATAAAATAACATTTAAAAAGT Gene: Cbei_2383: Xylose isomerase (EC 5.3.1.5)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Xylose isomerase (EC 5.3.1.5)

CRON 3.
xylT	Clostridium acetobutylicum ATCC 824	* Clostridium beijerincki NCIMB 8052 Site: position = -393 score = 6.11328 sequence = ACTTTTTAAATTACTTTTTAAAGTT Site: position = -381 score = 6.29536 sequence = ACTTTTTAAAGTTTATTGAAAAAGG Gene: Cbei_0109: D-xylose proton-symporter XylT	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	D-xylose proton-symporter XylT

CRON 4.
xynT	* Clostridium acetobutylicum ATCC 824 Site: position = -96 score = 7.05893 sequence = ACTTTTTAAAGTGCTTTTTAAAAGT Site: position = -84 score = 5.60773 sequence = GCTTTTTAAAAGTTATTGAAAAAGT Gene: CAC3451: Xyloside transporter XynT	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4125: Xyloside transporter XynT	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Xyloside transporter XynT
xynB	Clostridium acetobutylicum ATCC 824 Gene: CAC3452: Beta-xylosidase (EC 3.2.1.37)	* Clostridium beijerincki NCIMB 8052 Site: position = -95 score = 5.47103 sequence = AGTTTATAAAGGAAAGTTAAGAATA Gene: Cbei_4126: Beta-xylosidase (EC 3.2.1.37)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Beta-xylosidase (EC 3.2.1.37)

CRON 5.
tal	Clostridium acetobutylicum ATCC 824 Gene: CAC1347: Transaldolase (EC 2.2.1.2)	* Clostridium beijerincki NCIMB 8052 Site: position = -314 score = 6.62997 sequence = ACTTATTAAATAAATTTTTAAAATA Site: position = -302 score = 6.21794 sequence = AATTTTTAAAATATATTTTTAAAGT Gene: Cbei_2386: Transaldolase (EC 2.2.1.2)	Clostridium botulinum A str. ATCC 3502	* Clostridium butyricum 5521 Site: position = -70 score = 6.37195 sequence = ACTTATTAAATATATTTTTAAAAGA Gene: CBY_2344: Transaldolase (EC 2.2.1.2)	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Transaldolase (EC 2.2.1.2)
tkt	Clostridium acetobutylicum ATCC 824 Gene: CAC1348: Transketolase (EC 2.2.1.1)	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4644: Transketolase (EC 2.2.1.1)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_2345: Transketolase (EC 2.2.1.1)	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Transketolase (EC 2.2.1.1)

CRON 6.
CAC2611	* Clostridium acetobutylicum ATCC 824 Site: position = -109 score = 7.1079 sequence = ACTTATTAAACAAACTTTAAAAACA Gene: CAC2611: hypothetical protein	* Clostridium beijerincki NCIMB 8052 Site: position = -132 score = 5.75022 sequence = AATTATTAAAAGATATGTATAAAGA Gene: Cbei_2388: hypothetical protein	Clostridium botulinum A str. ATCC 3502	* Clostridium butyricum 5521 Site: position = -87 score = 7.1079 sequence = ACTTATTAAAATACATTTAAAAAGT Gene: CBY_2380: hypothetical protein	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	hypothetical protein
xylA-II	Clostridium acetobutylicum ATCC 824 Gene: CAC2610: novel Xylose isomerase (EC 5.3.1.5)	2 Clostridium beijerincki NCIMB 8052* Site: position = -121 score = 5.29981 sequence = AATTATTAAATAAACTATAAGAATA Gene: Cbei_2389: novel Xylose isomerase (EC 5.3.1.5) Site: position = -259 score = 6.48682 sequence = ACTTATCAAACAACATTTAAAAAGT Gene: Cbei_4681: novel Xylose isomerase (EC 5.3.1.5)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_2379: novel Xylose isomerase (EC 5.3.1.5)	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	novel Xylose isomerase (EC 5.3.1.5)

CRON 7.
xylB	* Clostridium acetobutylicum ATCC 824 Site: position = -50 score = 7.17446 sequence = ACTTATTAAAGGATATTTAAAAAGT Gene: CAC2612: Xylulose kinase (EC 2.7.1.17)	* Clostridium beijerincki NCIMB 8052 Site: position = -98 score = 7.1079 sequence = ACTTATTAAAATACATTTAAAAAGT Gene: Cbei_2384: Xylulose kinase (EC 2.7.1.17)	Clostridium botulinum A str. ATCC 3502	* Clostridium butyricum 5521 Site: position = -80 score = 5.62439 sequence = ACATTTAAAAAGAATTTTAATAATT Site: position = -92 score = 7.1079 sequence = ACTTATTAAAATACATTTAAAAAGA Gene: CBY_2342: Xylulose kinase (EC 2.7.1.17)	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Xylulose kinase (EC 2.7.1.17)
xylR	* Clostridium acetobutylicum ATCC 824 Site: position = -97 score = 6.80119 sequence = ACTTTATAAAACAACTTTATAAAGG Gene: CAC3673: Xylose repressor XylR, ROK family	Clostridium beijerincki NCIMB 8052 Gene: Cbei_2385: Xylose repressor XylR, ROK family	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521 Gene: CBY_2343: Xylose repressor XylR, ROK family	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Xylose repressor XylR, ROK family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog XylR - Clostridia-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --