Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of AraR in Clostridium beijerincki NCIMB 8052

Properties
Regulator type: Transcription factor
TF locus tag: Cbei_4456
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Regulog: AraR - Clostridia-1
Statistics of regulated genes:
- Genes 14
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -260
Score: 5.1
Sequence: CATCTTGTATGTACAACATT
Position: -227
Score: 4.6
Sequence: AAGCTTGTACATACATCAAA
Locus tag: Cbei_4457
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
Cbei_4457
araA
L-arabinose isomerase (EC 5.3.1.4)
Position: -52
Score: 4.9
Sequence: GATGTGGTACGTACATGTTT
Locus tag: Cbei_4461
Name: Cbei_4461
Funciton: Putative arabinose-regulated ABC transport system, ATP-binding protein
Locus tag: Cbei_4460
Name: Cbei_4460
Funciton: Putative arabinose-regulated ABC transport system, permease protein
Locus tag: Cbei_4459
Name: Cbei_4459
Funciton: Putative arabinose-regulated ABC transport system, permease protein
Cbei_4461
Cbei_4461
Putative arabinose-regulated ABC transport system, ATP-binding protein
Cbei_4460
Cbei_4460
Putative arabinose-regulated ABC transport system, permease protein
Cbei_4459
Cbei_4459
Putative arabinose-regulated ABC transport system, permease protein
Position: -267
Score: 4.9
Sequence: TTTCATGTATGTACAAGTAT
Position: -234
Score: 4.9
Sequence: AAAATTGTACATACAATTAT
Locus tag: Cbei_4464
Name: araJ
Funciton: Predicted arabinose response two-component system sensor histidine kinase
Locus tag: Cbei_4463
Name: araI
Funciton: Predicted arabinose response two-component system sensor histidine kinase/response regulator hybrid
Cbei_4464
araJ
Predicted arabinose response two-component system sensor histidine kinase
Cbei_4463
araI
Predicted arabinose response two-component system sensor histidine kinase/response regulator hybrid
Position: -310
Score: 4.4
Sequence: CATGAAGTACGTACAACATA
Position: -135
Score: 4.4
Sequence: ATTGATGTACTTACAAGATA
Locus tag: Cbei_4451
Name: Cbei_4451
Funciton: hypothetical protein
Locus tag: Cbei_4450
Name: araF
Funciton: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
Locus tag: Cbei_4449
Name: araG
Funciton: L-arabinose transport, ATP binding protein
Locus tag: Cbei_4448
Name: araH
Funciton: L-arabinose transport system permease protein (TC 3.A.1.2.2)
Cbei_4451
Cbei_4451
hypothetical protein
Cbei_4450
araF
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
Cbei_4449
araG
L-arabinose transport, ATP binding protein
Cbei_4448
araH
L-arabinose transport system permease protein (TC 3.A.1.2.2)
Position: -123
Score: 4.9
Sequence: ATAATTGTATGTACAATTTT
Position: -90
Score: 4.9
Sequence: ATACTTGTACATACATGAAA
Locus tag: Cbei_4465
Name: epiA
Funciton: L-arabinose-specific 1-epimerase (mutarotase)
Cbei_4465
epiA
L-arabinose-specific 1-epimerase (mutarotase)
Position: -99
Score: 4.5
Sequence: CATCAAGTGCGTACAACTTT
Locus tag: Cbei_4456
Name: null
Funciton: Transcriptional repressor of arabinoside utilization operon, GntR family
Locus tag: Cbei_4455
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: Cbei_4454
Name: null
Funciton: Transaldolase (EC 2.2.1.2)
Cbei_4456
Transcriptional repressor of arabinoside utilization operon, GntR family
Cbei_4455
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Cbei_4454
Transaldolase (EC 2.2.1.2)
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