Regulog AraR - Clostridia-1

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Arabinose utilization
Effector:	Arabinose
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 26 sites [see more]

Member of regulog collections

By taxonomy - Clostridia-1
By TF family - GntR/Others
By effector - Arabinose
By pathway - Arabinose utilization

Statistics of regulated genes
Genome	Genes	Operons
Clostridium acetobutylicum ATCC 824	14	7
Clostridium beijerincki NCIMB 8052	14	6
Clostridium botulinum A str. ATCC 3502
Clostridium butyricum 5521
Clostridium kluyveri DSM 555
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium tetani E88

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
araJ	Clostridium acetobutylicum ATCC 824	* Clostridium beijerincki NCIMB 8052 Site: position = -267 score = 4.90972 sequence = TTTCATGTATGTACAAGTAT Site: position = -234 score = 4.85152 sequence = AAAATTGTACATACAATTAT Gene: Cbei_4464: Predicted arabinose response two-component system sensor histidine kinase	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Predicted arabinose response two-component system sensor histidine kinase
araI	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4463: Predicted arabinose response two-component system sensor histidine kinase/response regulator hybrid	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Predicted arabinose response two-component system sensor histidine kinase/response regulator hybrid

CRON 2.
Cbei_4461	Clostridium acetobutylicum ATCC 824	* Clostridium beijerincki NCIMB 8052 Site: position = -52 score = 4.9091 sequence = GATGTGGTACGTACATGTTT Gene: Cbei_4461: Putative arabinose-regulated ABC transport system, ATP-binding protein	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Putative arabinose-regulated ABC transport system, ATP-binding protein
Cbei_4460	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4460: Putative arabinose-regulated ABC transport system, permease protein	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Putative arabinose-regulated ABC transport system, permease protein
Cbei_4459	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4459: Putative arabinose-regulated ABC transport system, permease protein	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Putative arabinose-regulated ABC transport system, permease protein

CRON 3.
Cbei_4451	Clostridium acetobutylicum ATCC 824	* Clostridium beijerincki NCIMB 8052 Site: position = -135 score = 4.41148 sequence = ATTGATGTACTTACAAGATA Site: position = -310 score = 4.40344 sequence = CATGAAGTACGTACAACATA Gene: Cbei_4451: hypothetical protein	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	hypothetical protein
araF	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4450: L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2)
araG	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4449: L-arabinose transport, ATP binding protein	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	L-arabinose transport, ATP binding protein
araH	Clostridium acetobutylicum ATCC 824	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4448: L-arabinose transport system permease protein (TC 3.A.1.2.2)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	L-arabinose transport system permease protein (TC 3.A.1.2.2)

CRON 4.
abf3	* Clostridium acetobutylicum ATCC 824 Site: position = -300 score = 4.47139 sequence = ATATTTATACGTGTTAATTT Site: position = -228 score = 3.90833 sequence = CATTTTATGGGTATATAATA Gene: CAC3436: Alpha-N-arabinofuranosidase (EC 3.2.1.55)	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Alpha-N-arabinofuranosidase (EC 3.2.1.55)

CRON 5.
araE	* Clostridium acetobutylicum ATCC 824 Site: position = -215 score = 4.64203 sequence = CAATTCATACGTATAAAATC Site: position = -182 score = 4.37719 sequence = ACATTTATACACATAAATAT Gene: CAC1339: Arabinose-proton symporter	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Arabinose-proton symporter

CRON 6.
arb43	* Clostridium acetobutylicum ATCC 824 Site: position = -201 score = 5.72461 sequence = AAATTTATACGTATAAATTA Site: position = -60 score = 5.34058 sequence = TAATATGTACGTATATATTA Gene: CAC1529: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
araT	Clostridium acetobutylicum ATCC 824 Gene: CAC1530: putative arabinoside transporter	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	putative arabinoside transporter

CRON 7.
ptk	* Clostridium acetobutylicum ATCC 824 Site: position = -154 score = 4.58233 sequence = TGACATATGCGTACAAATAT Site: position = -186 score = 5.82682 sequence = AAATTTATACGTACAAATTA Gene: CAC1343: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)

CRON 8.
araK	* Clostridium acetobutylicum ATCC 824 Site: position = -103 score = 4.89418 sequence = AAATAGGTACGTACCATTTT Site: position = -72 score = 4.46492 sequence = TGACATGTACGTACAAAAGT Gene: CAC1344: novel Ribulokinase (EC 2.7.1.16)	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4452: novel Ribulokinase (EC 2.7.1.16)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	novel Ribulokinase (EC 2.7.1.16)
araE/xylT	Clostridium acetobutylicum ATCC 824 Gene: CAC1345: Arabinose-proton symporter	Clostridium beijerincki NCIMB 8052	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Arabinose-proton symporter
araA	2 Clostridium acetobutylicum ATCC 824 Gene: CAC1342: L-arabinose isomerase (EC 5.3.1.4) Gene: CAC1346: L-arabinose isomerase (EC 5.3.1.4)	* Clostridium beijerincki NCIMB 8052 Site: position = -260 score = 5.07202 sequence = CATCTTGTATGTACAACATT Site: position = -227 score = 4.64442 sequence = AAGCTTGTACATACATCAAA Gene: Cbei_4457: L-arabinose isomerase (EC 5.3.1.4)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	L-arabinose isomerase (EC 5.3.1.4)
tal	Clostridium acetobutylicum ATCC 824 Gene: CAC1347: Transaldolase (EC 2.2.1.2)	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4454: Transaldolase (EC 2.2.1.2)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Transaldolase (EC 2.2.1.2)
tkt	Clostridium acetobutylicum ATCC 824 Gene: CAC1348: Transketolase (EC 2.2.1.1)	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4453: Transketolase (EC 2.2.1.1)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Transketolase (EC 2.2.1.1)
epiA	Clostridium acetobutylicum ATCC 824 Gene: CAC1349: L-arabinose-specific 1-epimerase (mutarotase)	* Clostridium beijerincki NCIMB 8052 Site: position = -123 score = 4.85152 sequence = ATAATTGTATGTACAATTTT Site: position = -90 score = 4.90972 sequence = ATACTTGTACATACATGAAA Gene: Cbei_4465: L-arabinose-specific 1-epimerase (mutarotase)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	L-arabinose-specific 1-epimerase (mutarotase)
araR	* Clostridium acetobutylicum ATCC 824 Site: position = -246 score = 4.59459 sequence = TAATTTGTACTTATAAATGT Site: position = -88 score = 5.32082 sequence = AAATTTATACGTATCAATAT Site: position = -215 score = 4.65115 sequence = ATTTTCATACGTATAAATTC Gene: CAC1340: Transcriptional repressor of arabinoside utilization operon, GntR family	* Clostridium beijerincki NCIMB 8052 Site: position = -99 score = 4.45698 sequence = CATCAAGTGCGTACAACTTT Gene: Cbei_4456: Transcriptional repressor of arabinoside utilization operon, GntR family	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	Transcriptional repressor of arabinoside utilization operon, GntR family
araD	* Clostridium acetobutylicum ATCC 824 Site: position = -430 score = 5.32082 sequence = ATATTGATACGTATAAATTT Site: position = -272 score = 4.59459 sequence = ACATTTATAAGTACAAATTA Site: position = -303 score = 4.65115 sequence = GAATTTATACGTATGAAAAT Gene: CAC1341: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4455: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)	Clostridium botulinum A str. ATCC 3502	Clostridium butyricum 5521	Clostridium kluyveri DSM 555	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium tetani E88	L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AraR - Clostridia-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --