Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of AraR in Clostridium acetobutylicum ATCC 824

Properties
Regulator type: Transcription factor
TF locus tag: CAC1340
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Arabinose utilization
Effector: Arabinose
Regulog: AraR - Clostridia-1
Statistics of regulated genes:
- Genes 14
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -201
Score: 5.7
Sequence: AAATTTATACGTATAAATTA
Position: -60
Score: 5.3
Sequence: TAATATGTACGTATATATTA
Locus tag: CAC1529
Name: arb43
Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
Locus tag: CAC1530
Name: araT
Funciton: putative arabinoside transporter
CAC1529
arb43
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
CAC1530
araT
putative arabinoside transporter
Position: -430
Score: 5.3
Sequence: ATATTGATACGTATAAATTT
Position: -303
Score: 4.7
Sequence: GAATTTATACGTATGAAAAT
Position: -272
Score: 4.6
Sequence: ACATTTATAAGTACAAATTA
Locus tag: CAC1341
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: CAC1342
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
CAC1341
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
CAC1342
araA
L-arabinose isomerase (EC 5.3.1.4)
Position: -215
Score: 4.6
Sequence: CAATTCATACGTATAAAATC
Position: -182
Score: 4.4
Sequence: ACATTTATACACATAAATAT
Locus tag: CAC1339
Name: araE
Funciton: Arabinose-proton symporter
CAC1339
araE
Arabinose-proton symporter
Position: -300
Score: 4.5
Sequence: ATATTTATACGTGTTAATTT
Position: -228
Score: 3.9
Sequence: CATTTTATGGGTATATAATA
Locus tag: CAC3436
Name: abf3
Funciton: Alpha-N-arabinofuranosidase (EC 3.2.1.55)
CAC3436
abf3
Alpha-N-arabinofuranosidase (EC 3.2.1.55)
Position: -246
Score: 4.6
Sequence: TAATTTGTACTTATAAATGT
Position: -215
Score: 4.7
Sequence: ATTTTCATACGTATAAATTC
Position: -88
Score: 5.3
Sequence: AAATTTATACGTATCAATAT
Locus tag: CAC1340
Name: araR
Funciton: Transcriptional repressor of arabinoside utilization operon, GntR family
CAC1340
araR
Transcriptional repressor of arabinoside utilization operon, GntR family
Position: -186
Score: 5.8
Sequence: AAATTTATACGTACAAATTA
Position: -154
Score: 4.6
Sequence: TGACATATGCGTACAAATAT
Locus tag: CAC1343
Name: ptk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
CAC1343
ptk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -103
Score: 4.9
Sequence: AAATAGGTACGTACCATTTT
Position: -72
Score: 4.5
Sequence: TGACATGTACGTACAAAAGT
Locus tag: CAC1344
Name: araK
Funciton: novel Ribulokinase (EC 2.7.1.16)
Locus tag: CAC1345
Name: araE/xylT
Funciton: Arabinose-proton symporter
Locus tag: CAC1346
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: CAC1347
Name: null
Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: CAC1348
Name: tkt
Funciton: Transketolase (EC 2.2.1.1)
Locus tag: CAC1349
Name: epiA
Funciton: L-arabinose-specific 1-epimerase (mutarotase)
CAC1344
araK
novel Ribulokinase (EC 2.7.1.16)
CAC1345
araE/xylT
Arabinose-proton symporter
CAC1346
araA
L-arabinose isomerase (EC 5.3.1.4)
CAC1347
Transaldolase (EC 2.2.1.2)
CAC1348
tkt
Transketolase (EC 2.2.1.1)
CAC1349
epiA
L-arabinose-specific 1-epimerase (mutarotase)
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