Regulon of AraR in Clostridium acetobutylicum ATCC 824
| Regulator type: | Transcription factor |
| TF locus tag: | CAC1340 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Arabinose utilization |
| Effector: | Arabinose |
| Regulog: | AraR - Clostridia-1 |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By TF family - GntR/Others
- By effector - Arabinose
- By pathway - Arabinose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -201
Score: 5.7 Sequence: AAATTTATACGTATAAATTA
Position: -60
Score: 5.3 Sequence: TAATATGTACGTATATATTA
Locus tag: CAC1529
Name: arb43 Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
Locus tag: CAC1530
Name: araT Funciton: putative arabinoside transporter |
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arb43
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Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
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araT
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putative arabinoside transporter
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Position: -430
Score: 5.3 Sequence: ATATTGATACGTATAAATTT
Position: -303
Score: 4.7 Sequence: GAATTTATACGTATGAAAAT
Position: -272
Score: 4.6 Sequence: ACATTTATAAGTACAAATTA
Locus tag: CAC1341
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: CAC1342
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) |
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araD
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L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
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araA
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L-arabinose isomerase (EC 5.3.1.4)
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Position: -215
Score: 4.6 Sequence: CAATTCATACGTATAAAATC
Position: -182
Score: 4.4 Sequence: ACATTTATACACATAAATAT
Locus tag: CAC1339
Name: araE Funciton: Arabinose-proton symporter |
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araE
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Arabinose-proton symporter
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Position: -300
Score: 4.5 Sequence: ATATTTATACGTGTTAATTT
Position: -228
Score: 3.9 Sequence: CATTTTATGGGTATATAATA
Locus tag: CAC3436
Name: abf3 Funciton: Alpha-N-arabinofuranosidase (EC 3.2.1.55) |
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abf3
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Alpha-N-arabinofuranosidase (EC 3.2.1.55)
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Position: -246
Score: 4.6 Sequence: TAATTTGTACTTATAAATGT
Position: -215
Score: 4.7 Sequence: ATTTTCATACGTATAAATTC
Position: -88
Score: 5.3 Sequence: AAATTTATACGTATCAATAT
Locus tag: CAC1340
Name: araR Funciton: Transcriptional repressor of arabinoside utilization operon, GntR family |
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araR
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Transcriptional repressor of arabinoside utilization operon, GntR family
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Position: -186
Score: 5.8 Sequence: AAATTTATACGTACAAATTA
Position: -154
Score: 4.6 Sequence: TGACATATGCGTACAAATAT
Locus tag: CAC1343
Name: ptk Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) |
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ptk
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Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
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Position: -103
Score: 4.9 Sequence: AAATAGGTACGTACCATTTT
Position: -72
Score: 4.5 Sequence: TGACATGTACGTACAAAAGT
Locus tag: CAC1344
Name: araK Funciton: novel Ribulokinase (EC 2.7.1.16)
Locus tag: CAC1345
Name: araE/xylT Funciton: Arabinose-proton symporter
Locus tag: CAC1346
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4)
Locus tag: CAC1347
Name: null Funciton: Transaldolase (EC 2.2.1.2)
Locus tag: CAC1348
Name: tkt Funciton: Transketolase (EC 2.2.1.1)
Locus tag: CAC1349
Name: epiA Funciton: L-arabinose-specific 1-epimerase (mutarotase) |
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araK
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novel Ribulokinase (EC 2.7.1.16)
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araE/xylT
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Arabinose-proton symporter
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araA
|
L-arabinose isomerase (EC 5.3.1.4)
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Transaldolase (EC 2.2.1.2)
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tkt
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Transketolase (EC 2.2.1.1)
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epiA
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L-arabinose-specific 1-epimerase (mutarotase)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |