Regulog GEMM_RNA_motif - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | GEMM_RNA_motif |
| RFAM: | RF01051 |
| Regulation mode: | |
| Biological process: | Second messenger response |
| Effector: | Cyclic diguanylate |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - GEMM_RNA_motif
- By effector - Cyclic diguanylate
- By pathway - Second messenger response
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 4 | 2 |
| Clostridium sp. SS2/1 | 3 | 3 |
| Clostridium cellulolyticum H10 | ||
| Clostridium phytofermentans ISDg | 2 | 2 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | ||
| Clostridium botulinum A str. ATCC 3502 | ||
| Clostridium novyi NT | 1 | 1 |
| Clostridium perfringens ATCC 13124 | 2 | 2 |
| Clostridium difficile 630 | 33 | 6 |
| Clostridium beijerincki NCIMB 8052 | 7 | 4 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | ||
| Clostridium butyricum 5521 | 4 | 2 |
| Clostridium bolteae ATCC BAA-613 | 4 | 4 |
| Clostridium bartlettii DSM 16795 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| CD2797 |
|
|
|
|
|
|
|
|
*2
Clostridium perfringens ATCC 13124 Site: position = -282 score = 70.73 sequence = TAATATATTGGCAAA... Gene: CPF_1073: hypothetical protein Site: position = -227 score = 67.96 sequence = TTAAAAAAATGGGCA... Gene: CPF_1489: hypothetical protein |
*
Clostridium difficile 630 Site: position = -210 score = 64.22 sequence = GAAAATTAAATGGCA... Gene: CD2797: hypothetical protein |
|
|
|
|
|
|
Gene: CLOHIR_00533: hypothetical protein |
|
|
Gene: CLOBAR_01122: hypothetical protein |
hypothetical protein |
| CRON 2. | |||||||||||||||||||||
| CLOSS21_00843 |
|
*
Clostridium sp. SS2/1 Site: position = -474 score = 75.87 sequence = TTTATTCATAGGGCA... Gene: CLOSS21_00843: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
hypothetical protein |
| CRON 3. | |||||||||||||||||||||
| CLONEX_03566 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
*
Clostridium nexile DSM 1787 Site: position = -402 score = 25.09 sequence = ATAATCGCAAAGACA... Gene: CLONEX_03566: hypothetical protein |
|
|
|
|
|
hypothetical protein |
| CRON 4. | |||||||||||||||||||||
| Clos_1635 |
|
|
|
|
|
|
|
|
|
|
|
*
Clostridium sp. OhILAs Site: position = -243 score = 40.02 sequence = TACAATAAATGGGCA... Gene: Clos_1635: Type IV pilin PilA |
|
|
|
|
|
|
|
|
Type IV pilin PilA |
| CRON 5. | |||||||||||||||||||||
| CLOBAR_02389 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
*
Clostridium bolteae ATCC BAA-613 Site: position = -138 score = 50.34 sequence = GTAAATATTGGGGCA... Gene: CLOBOL_00697: hypothetical protein |
Gene: CLOBAR_02389: hypothetical protein |
hypothetical protein |
| CRON 6. | |||||||||||||||||||||
| NT01CX_2393 |
|
|
|
|
Gene: CTC00704: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
|
|
|
*
Clostridium bolteae ATCC BAA-613 Site: position = -376 score = 34.54 sequence = TATATTCAGGTAGCA... Gene: CLOBOL_04793: hypothetical protein |
|
hypothetical protein |
| CRON 7. | |||||||||||||||||||||
| CLOBOL_02085 |
|
*
Clostridium sp. SS2/1 Site: position = -173 score = 56.27 sequence = AAGATTCTAGGCAAA... Gene: CLOSS21_02742: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Gene: CLOBOL_02085: hypothetical protein |
|
hypothetical protein |
| CRON 8. | |||||||||||||||||||||
| Cbei_3975 |
|
|
|
|
*
Clostridium tetani E88 Site: position = -87 score = 58.26 sequence = CACGATAAAGGCAAA... Gene: CTC00472: transglutaminase-like predicted protease |
|
|
|
|
|
Gene: Cbei_3975: transglutaminase-like predicted protease |
|
|
|
|
|
|
|
|
|
transglutaminase-like predicted protease |
| CRON 9. | |||||||||||||||||||||
| CD1990 |
|
|
|
|
|
|
|
|
|
*
Clostridium difficile 630 Site: position = -177 score = 58.93 sequence = ATTCAGATATAGGCA... Gene: CD1990: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
hypothetical protein |
| CRON 10. | |||||||||||||||||||||
| CLOBOL_02760 |
|
Gene: CLOSS21_00656: transglutaminase domain protein |
|
*
Clostridium phytofermentans ISDg Site: position = -99 score = 62.81 sequence = AACGATAATAGCAAA... Gene: null: transglutaminase domain protein |
|
|
|
|
|
|
|
|
|
Gene: CLOSCI_02626: transglutaminase domain protein |
|
Gene: CLOLEP_00425: transglutaminase domain protein |
|
|
Gene: CLOBOL_02760: transglutaminase domain protein |
|
transglutaminase domain protein |
| CRON 11. | |||||||||||||||||||||
| Cbei_0874 |
|
|
|
|
|
|
|
Gene: NT01CX_0958: Acetyltransferase-like |
|
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -433 score = 65.15 sequence = ATATCAATAGGCACA... Gene: Cbei_0874: Acetyltransferase-like |
|
|
|
|
|
|
Gene: CBY_2077: Acetyltransferase-like |
|
|
Acetyltransferase-like |
| tlpA |
|
|
|
|
|
|
Gene: CBO2468: Methyl-accepting chemotaxis protein |
|
|
|
Gene: Cbei_0875: Methyl-accepting chemotaxis protein |
|
|
|
|
|
|
Gene: CBY_0906: Methyl-accepting chemotaxis protein |
|
|
Methyl-accepting chemotaxis protein |
| CRON 12. | |||||||||||||||||||||
| CD2309 |
|
|
|
|
|
|
|
|
|
*2
Clostridium difficile 630 Site: position = -151 score = 60.68 sequence = AAAACTAAATCGGCA... Gene: CD1424: hypothetical protein Site: position = -142 score = 66.57 sequence = AACTAAATCGGCAAA... Gene: CD2309: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
hypothetical protein |
| CRON 13. | |||||||||||||||||||||
| Cphy_1136 |
|
|
|
*
Clostridium phytofermentans ISDg Site: position = -229 score = 67.31 sequence = TATAAATTTAGCAAA... Gene: null: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
| CRON 14. | |||||||||||||||||||||
| NT01CX_0209 |
|
|
|
|
|
|
|
*
Clostridium novyi NT Site: position = -142 score = 67.48 sequence = CCAACGATAAAGGCA... Gene: NT01CX_0209: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
|
|
hypothetical protein |
| CRON 15. | |||||||||||||||||||||
| motA |
Gene: CKL_3789: Flagellar motor rotation protein MotA |
|
Gene: Ccel_0264: Flagellar motor rotation protein MotA |
|
|
2
Clostridium acetobutylicum ATCC 824 Gene: CAC1846: Flagellar motor rotation protein MotA Gene: CAC0304: Flagellar motor rotation protein MotA |
Gene: CBO2227: Flagellar motor rotation protein MotA |
|
|
Gene: CD0744: Flagellar motor rotation protein MotA |
*3
Clostridium beijerincki NCIMB 8052 Site: position = -260 score = 68.56 sequence = TAAATGTTACTAGCA... Gene: Cbei_4273: Flagellar motor rotation protein MotA Gene: Cbei_4831: Flagellar motor rotation protein MotA Gene: Cbei_1594: Flagellar motor rotation protein MotA |
|
|
|
|
|
|
Gene: CBY_0364: Flagellar motor rotation protein MotA |
|
|
Flagellar motor rotation protein MotA |
| motB |
Gene: CKL_3788: Flagellar motor rotation protein MotB |
|
Gene: Ccel_0263: Flagellar motor rotation protein MotB |
|
|
2
Clostridium acetobutylicum ATCC 824 Gene: CAC1845: Flagellar motor rotation protein MotB Gene: CAC0305: Flagellar motor rotation protein MotB |
Gene: CBO2226: Flagellar motor rotation protein MotB |
|
|
Gene: CD0745: Flagellar motor rotation protein MotB |
3
Clostridium beijerincki NCIMB 8052 Gene: Cbei_4272: Flagellar motor rotation protein MotB Gene: Cbei_4830: Flagellar motor rotation protein MotB Gene: Cbei_1593: Flagellar motor rotation protein MotB |
|
|
|
|
|
|
Gene: CBY_0365: Flagellar motor rotation protein MotB |
|
|
Flagellar motor rotation protein MotB |
| CRON 16. | |||||||||||||||||||||
| CD2830 |
|
|
|
|
|
|
|
|
|
*
Clostridium difficile 630 Site: position = -186 score = 68.73 sequence = AAATTAAATGAGGCA... Gene: CD2830: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
hypothetical protein |
| CRON 17. | |||||||||||||||||||||
| CLOBOL_00226 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
*
Clostridium bolteae ATCC BAA-613 Site: position = -182 score = 53.65 sequence = AAAAAATAATTAGCA... Gene: CLOBOL_00226: hypothetical protein |
|
hypothetical protein |
| CLOBOL_00225 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
*
Clostridium bolteae ATCC BAA-613 Site: position = -394 score = 53.65 sequence = AAAAAATAATTAGCA... Gene: CLOBOL_00225: hypothetical protein |
|
hypothetical protein |
| CRON 18. | |||||||||||||||||||||
| CLOSS21_01726 |
|
*
Clostridium sp. SS2/1 Site: position = -331 score = 70.48 sequence = ATTATTTTAAAGGCA... Gene: CLOSS21_01726: hypothetical protein |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
hypothetical protein |
| CRON 19. | |||||||||||||||||||||
| cheY |
|
|
|
|
|
|
|
|
|
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -120 score = 62.23 sequence = TATTGAATTGGCAAA... Gene: Cbei_0537: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY |
|
|
|
|
|
|
*
Clostridium butyricum 5521 Site: position = -148 score = 56.0 sequence = TTCATATTGGGCAAA... Gene: CBY_0554: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY |
|
|
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY |
| CRON 20. | |||||||||||||||||||||
| flgB |
Gene: CKL_1150: Flagellar basal-body rod protein FlgB |
|
Gene: Ccel_2054: Flagellar basal-body rod protein FlgB |
Gene: null: Flagellar basal-body rod protein FlgB |
Gene: CTC01678: Flagellar basal-body rod protein FlgB |
Gene: CAC2165: Flagellar basal-body rod protein FlgB |
Gene: CBO2665: Flagellar basal-body rod protein FlgB |
|
|
*
Clostridium difficile 630 Site: position = -494 score = 69.29 sequence = AACTAAATAGGCAAA... Gene: CD0245: Flagellar basal-body rod protein FlgB |
Gene: Cbei_4271: Flagellar basal-body rod protein FlgB |
Gene: Clos_1476: Flagellar basal-body rod protein FlgB |
|
|
|
|
|
*
Clostridium butyricum 5521 Site: position = -402 score = 60.08 sequence = ATAATTGAATACGCA... Gene: CBY_3585: Flagellar basal-body rod protein FlgB |
|
|
Flagellar basal-body rod protein FlgB |
| flgC |
Gene: CKL_1151: Flagellar basal-body rod protein FlgC |
|
Gene: Ccel_2053: Flagellar basal-body rod protein FlgC |
Gene: null: Flagellar basal-body rod protein FlgC |
Gene: CTC01677: Flagellar basal-body rod protein FlgC |
Gene: CAC2164: Flagellar basal-body rod protein FlgC |
Gene: CBO2664: Flagellar basal-body rod protein FlgC |
|
|
Gene: CD0246: Flagellar basal-body rod protein FlgC |
Gene: Cbei_4270: Flagellar basal-body rod protein FlgC |
Gene: Clos_1477: Flagellar basal-body rod protein FlgC |
|
|
|
|
|
Gene: CBY_3584: Flagellar basal-body rod protein FlgC |
|
|
Flagellar basal-body rod protein FlgC |
| fliE |
Gene: CKL_1152: Flagellar hook-basal body complex protein FliE |
|
Gene: Ccel_2052: Flagellar hook-basal body complex protein FliE |
Gene: null: Flagellar hook-basal body complex protein FliE |
|
Gene: CAC2163: Flagellar hook-basal body complex protein FliE |
Gene: CBO2663: Flagellar hook-basal body complex protein FliE |
|
|
Gene: CD0247: Flagellar hook-basal body complex protein FliE |
Gene: Cbei_4269: Flagellar hook-basal body complex protein FliE |
Gene: Clos_1478: Flagellar hook-basal body complex protein FliE |
|
|
|
|
|
Gene: CBY_3583: Flagellar hook-basal body complex protein FliE |
Gene: CLOBOL_04559: Flagellar hook-basal body complex protein FliE |
|
Flagellar hook-basal body complex protein FliE |
| fliF |
Gene: CKL_1153: Flagellar M-ring protein FliF |
|
Gene: Ccel_2051: Flagellar M-ring protein FliF |
Gene: null: Flagellar M-ring protein FliF |
Gene: CTC01676: Flagellar M-ring protein FliF |
Gene: CAC2162: Flagellar M-ring protein FliF |
Gene: CBO2662: Flagellar M-ring protein FliF |
|
|
Gene: CD0248: Flagellar M-ring protein FliF |
Gene: Cbei_4268: Flagellar M-ring protein FliF |
Gene: Clos_1479: Flagellar M-ring protein FliF |
|
|
|
|
|
|
Gene: CLOBOL_04558: Flagellar M-ring protein FliF |
|
Flagellar M-ring protein FliF |
| fliG |
Gene: CKL_1154: Flagellar motor switch protein FliG |
|
Gene: Ccel_2050: Flagellar motor switch protein FliG |
Gene: null: Flagellar motor switch protein FliG |
Gene: CTC01675: Flagellar motor switch protein FliG |
Gene: CAC2161: Flagellar motor switch protein FliG |
Gene: CBO2661: Flagellar motor switch protein FliG |
|
|
Gene: CD0249: Flagellar motor switch protein FliG |
Gene: Cbei_4267: Flagellar motor switch protein FliG |
Gene: Clos_1480: Flagellar motor switch protein FliG |
|
|
|
|
|
Gene: CBY_3580: Flagellar motor switch protein FliG |
Gene: CLOBOL_04557: Flagellar motor switch protein FliG |
|
Flagellar motor switch protein FliG |
| fliH |
Gene: CKL_1155: Flagellar assembly protein FliH |
|
Gene: Ccel_2049: Flagellar assembly protein FliH |
Gene: null: Flagellar assembly protein FliH |
Gene: CTC01674: Flagellar assembly protein FliH |
Gene: CAC2160: Flagellar assembly protein FliH |
Gene: CBO2660: Flagellar assembly protein FliH |
|
|
Gene: CD0250: Flagellar assembly protein FliH |
Gene: Cbei_4266: Flagellar assembly protein FliH |
Gene: Clos_1481: Flagellar assembly protein FliH |
|
|
|
|
|
Gene: CBY_3579: Flagellar assembly protein FliH |
Gene: CLOBOL_04556: Flagellar assembly protein FliH |
|
Flagellar assembly protein FliH |
| fliI |
Gene: CKL_1156: Flagellum-specific ATP synthase FliI |
|
Gene: Ccel_2048: Flagellum-specific ATP synthase FliI |
Gene: null: Flagellum-specific ATP synthase FliI |
Gene: CTC01673: Flagellum-specific ATP synthase FliI |
Gene: CAC2159: Flagellum-specific ATP synthase FliI |
Gene: CBO2659: Flagellum-specific ATP synthase FliI |
|
|
Gene: CD0251: Flagellum-specific ATP synthase FliI |
Gene: Cbei_4265: Flagellum-specific ATP synthase FliI |
Gene: Clos_1482: Flagellum-specific ATP synthase FliI |
|
|
|
|
|
Gene: CBY_3578: Flagellum-specific ATP synthase FliI |
Gene: CLOBOL_04555: Flagellum-specific ATP synthase FliI |
|
Flagellum-specific ATP synthase FliI |
| fliJ |
Gene: CKL_1157: Flagellar protein FliJ |
|
Gene: Ccel_2047: Flagellar protein FliJ |
Gene: null: Flagellar protein FliJ |
Gene: CTC01672: Flagellar protein FliJ |
Gene: CAC2158: Flagellar protein FliJ |
Gene: CBO2658: Flagellar protein FliJ |
|
|
Gene: CD0252: Flagellar protein FliJ |
Gene: Cbei_4264: Flagellar protein FliJ |
Gene: Clos_1483: Flagellar protein FliJ |
|
|
|
|
|
Gene: CBY_3577: Flagellar protein FliJ |
Gene: CLOBOL_04554: Flagellar protein FliJ |
|
Flagellar protein FliJ |
| fliK |
Gene: CKL_1158: Flagellar hook-length control protein FliK |
|
Gene: Ccel_2045: Flagellar hook-length control protein FliK |
Gene: null: Flagellar hook-length control protein FliK |
Gene: CTC01671: Flagellar hook-length control protein FliK |
Gene: CAC2157: Flagellar hook-length control protein FliK |
Gene: CBO2657: Flagellar hook-length control protein FliK |
|
|
Gene: CD0253: Flagellar hook-length control protein FliK |
Gene: Cbei_4263: Flagellar hook-length control protein FliK |
Gene: Clos_1485: Flagellar hook-length control protein FliK |
|
|
|
|
|
Gene: CBY_3576: Flagellar hook-length control protein FliK |
Gene: CLOBOL_04553: Flagellar hook-length control protein FliK |
|
Flagellar hook-length control protein FliK |
| flgD |
Gene: CKL_1159: Flagellar basal-body rod modification protein FlgD |
|
Gene: Ccel_2044: Flagellar basal-body rod modification protein FlgD |
Gene: null: Flagellar basal-body rod modification protein FlgD |
Gene: CTC01669: Flagellar basal-body rod modification protein FlgD |
Gene: CAC2156: Flagellar basal-body rod modification protein FlgD |
Gene: CBO2656: Flagellar basal-body rod modification protein FlgD |
|
|
Gene: CD0254: Flagellar basal-body rod modification protein FlgD |
Gene: Cbei_4262: Flagellar basal-body rod modification protein FlgD |
Gene: Clos_1486: Flagellar basal-body rod modification protein FlgD |
|
|
|
|
|
Gene: CBY_3575: Flagellar basal-body rod modification protein FlgD |
Gene: CLOBOL_04552: Flagellar basal-body rod modification protein FlgD |
|
Flagellar basal-body rod modification protein FlgD |
| flgE |
Gene: CKL_1160: Flagellar hook protein FlgE |
|
Gene: Ccel_2042: Flagellar hook protein FlgE |
Gene: null: Flagellar hook protein FlgE |
Gene: CTC01667: Flagellar hook protein FlgE |
Gene: CAC2154: Flagellar hook protein FlgE |
Gene: CBO2654: Flagellar hook protein FlgE |
|
|
Gene: CD0255: Flagellar hook protein FlgE |
Gene: Cbei_4260: Flagellar hook protein FlgE |
Gene: Clos_1488: Flagellar hook protein FlgE |
|
|
|
|
|
Gene: CBY_3573: Flagellar hook protein FlgE |
Gene: CLOBOL_04550: Flagellar hook protein FlgE |
|
Flagellar hook protein FlgE |
| flbD |
Gene: CKL_1161: Flagellar protein FlbD |
|
Gene: Ccel_2041: Flagellar protein FlbD |
Gene: null: Flagellar protein FlbD |
|
Gene: CAC2153: Flagellar protein FlbD |
Gene: CBO2653: Flagellar protein FlbD |
|
|
Gene: CD0255A: Flagellar protein FlbD |
Gene: Cbei_4259: Flagellar protein FlbD |
Gene: Clos_1489: Flagellar protein FlbD |
|
|
|
|
|
Gene: CBY_3572: Flagellar protein FlbD |
Gene: CLOBOL_04549: Flagellar protein FlbD |
|
Flagellar protein FlbD |
| motA |
|
|
|
Gene: null: Flagellar motor rotation protein MotA |
Gene: CTC01666: Flagellar motor rotation protein MotA |
|
Gene: CBO2652: Flagellar motor rotation protein MotA |
|
|
Gene: CD0256: Flagellar motor rotation protein MotA |
|
Gene: Clos_1490: Flagellar motor rotation protein MotA |
|
|
|
|
|
Gene: CBY_3571: Flagellar motor rotation protein MotA |
Gene: CLOBOL_04548: Flagellar motor rotation protein MotA |
|
Flagellar motor rotation protein MotA |
| motB |
|
|
|
Gene: null: Flagellar motor rotation protein MotB |
Gene: CTC01665: Flagellar motor rotation protein MotB |
|
Gene: CBO2651: Flagellar motor rotation protein MotB |
|
|
Gene: CD0257: Flagellar motor rotation protein MotB |
|
Gene: Clos_1491: Flagellar motor rotation protein MotB |
|
|
|
|
|
Gene: CBY_3570: Flagellar motor rotation protein MotB |
|
|
Flagellar motor rotation protein MotB |
| fliL |
Gene: CKL_1162: Flagellar biosynthesis protein FliL |
|
Gene: Ccel_2040: Flagellar biosynthesis protein FliL |
Gene: null: Flagellar biosynthesis protein FliL |
Gene: CTC01664: Flagellar biosynthesis protein FliL |
Gene: CAC2152: Flagellar biosynthesis protein FliL |
Gene: CBO2650: Flagellar biosynthesis protein FliL |
|
|
Gene: CD0258: Flagellar biosynthesis protein FliL |
Gene: Cbei_4258: Flagellar biosynthesis protein FliL |
Gene: Clos_1492: Flagellar biosynthesis protein FliL |
|
|
|
|
|
Gene: CBY_3569: Flagellar biosynthesis protein FliL |
|
|
Flagellar biosynthesis protein FliL |
| fliZ |
Gene: CKL_1163: Flagellar biosynthesis protein FliZ |
|
Gene: Ccel_2036: Flagellar biosynthesis protein FliZ |
Gene: null: Flagellar biosynthesis protein FliZ |
Gene: CTC01663: Flagellar biosynthesis protein FliZ |
Gene: CAC2151: Flagellar biosynthesis protein FliZ |
Gene: CBO2649: Flagellar biosynthesis protein FliZ |
|
|
Gene: CD0259: Flagellar biosynthesis protein FliZ |
Gene: Cbei_4257: Flagellar biosynthesis protein FliZ |
Gene: Clos_1496: Flagellar biosynthesis protein FliZ |
|
|
|
|
|
Gene: CBY_3568: Flagellar biosynthesis protein FliZ |
|
|
Flagellar biosynthesis protein FliZ |
| fliP |
Gene: CKL_1164: Flagellar biosynthesis protein FliP |
|
Gene: Ccel_2035: Flagellar biosynthesis protein FliP |
Gene: null: Flagellar biosynthesis protein FliP |
Gene: CTC01662: Flagellar biosynthesis protein FliP |
Gene: CAC2150: Flagellar biosynthesis protein FliP |
Gene: CBO2648: Flagellar biosynthesis protein FliP |
|
|
Gene: CD0260: Flagellar biosynthesis protein FliP |
Gene: Cbei_4256: Flagellar biosynthesis protein FliP |
Gene: Clos_1497: Flagellar biosynthesis protein FliP |
|
|
|
|
|
Gene: CBY_3567: Flagellar biosynthesis protein FliP |
|
|
Flagellar biosynthesis protein FliP |
| fliQ |
Gene: CKL_1165: Flagellar biosynthesis protein FliQ |
|
Gene: Ccel_2034: Flagellar biosynthesis protein FliQ |
Gene: null: Flagellar biosynthesis protein FliQ |
|
Gene: CAC2149: Flagellar biosynthesis protein FliQ |
Gene: CBO2647: Flagellar biosynthesis protein FliQ |
|
|
Gene: CD0261: Flagellar biosynthesis protein FliQ |
Gene: Cbei_4255: Flagellar biosynthesis protein FliQ |
Gene: Clos_1498: Flagellar biosynthesis protein FliQ |
|
|
|
|
|
Gene: CBY_3566: Flagellar biosynthesis protein FliQ |
|
|
Flagellar biosynthesis protein FliQ |
| fliR/flhB |
Gene: CKL_1166: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB |
|
Gene: Ccel_2032: Flagellar biosynthesis protein FlhB |
Gene: null: Flagellar biosynthesis protein FlhB |
Gene: CTC01660: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB |
Gene: CAC2148: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB |
Gene: CBO2646: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB |
|
|
Gene: CD0262: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB |
Gene: Cbei_4254: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB |
Gene: Clos_1500: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB |
|
|
|
|
|
Gene: CBY_3565: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB |
|
|
Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB |
| flhA |
Gene: CKL_1167: Flagellar biosynthesis protein FlhA |
|
Gene: Ccel_2031: Flagellar biosynthesis protein FlhA |
Gene: null: Flagellar biosynthesis protein FlhA |
Gene: CTC01657: Flagellar biosynthesis protein FlhA |
Gene: CAC2147: Flagellar biosynthesis protein FlhA |
Gene: CBO2645: Flagellar biosynthesis protein FlhA |
|
|
Gene: CD0263: Flagellar biosynthesis protein FlhA |
Gene: Cbei_4253: Flagellar biosynthesis protein FlhA |
Gene: Clos_1501: Flagellar biosynthesis protein FlhA |
|
|
|
|
|
Gene: CBY_3564: Flagellar biosynthesis protein FlhA |
Gene: CLOBOL_04546: Flagellar biosynthesis protein FlhA |
|
Flagellar biosynthesis protein FlhA |
| flhF |
Gene: CKL_1168: Flagellar biosynthesis protein FlhF |
|
Gene: Ccel_2030: Flagellar biosynthesis protein FlhF |
Gene: null: Flagellar biosynthesis protein FlhF |
Gene: CTC01656: Flagellar biosynthesis protein FlhF |
Gene: CAC2146: Flagellar biosynthesis protein FlhF |
Gene: CBO2644: Flagellar biosynthesis protein FlhF |
|
|
Gene: CD0264: Flagellar biosynthesis protein FlhF |
Gene: Cbei_4252: Flagellar biosynthesis protein FlhF |
Gene: Clos_1502: Flagellar biosynthesis protein FlhF |
|
|
|
|
|
Gene: CBY_3563: Flagellar biosynthesis protein FlhF |
|
|
Flagellar biosynthesis protein FlhF |
| fleN |
Gene: CKL_1169: Flagellar synthesis regulator FleN |
|
Gene: Ccel_2029: Flagellar synthesis regulator FleN |
Gene: null: Flagellar synthesis regulator FleN |
Gene: CTC01655: Flagellar synthesis regulator FleN |
Gene: CAC2145: Flagellar synthesis regulator FleN |
Gene: CBO2643: Flagellar synthesis regulator FleN |
|
|
Gene: CD0265: Flagellar synthesis regulator FleN |
Gene: Cbei_4251: Flagellar synthesis regulator FleN |
Gene: Clos_1503: Flagellar synthesis regulator FleN |
|
|
|
|
|
Gene: CBY_3562: Flagellar synthesis regulator FleN |
|
|
Flagellar synthesis regulator FleN |
| fliA |
Gene: CKL_1170: RNA polymerase sigma factor for flagellar operon fliA |
|
Gene: Ccel_2022: RNA polymerase sigma factor for flagellar operon fliA |
|
Gene: CTC01653: RNA polymerase sigma factor for flagellar operon fliA |
Gene: CAC2143: RNA polymerase sigma factor for flagellar operon fliA |
Gene: CBO2641: RNA polymerase sigma factor for flagellar operon fliA |
|
|
Gene: CD0266: RNA polymerase sigma factor for flagellar operon fliA |
Gene: Cbei_4249: RNA polymerase sigma factor for flagellar operon fliA |
|
|
|
|
|
|
Gene: CBY_3560: RNA polymerase sigma factor for flagellar operon fliA |
Gene: CLOBOL_04545: RNA polymerase sigma factor for flagellar operon fliA |
|
RNA polymerase sigma factor for flagellar operon fliA |
| Cbei_4248 |
Gene: CKL_1171: hypothetical protein |
|
|
|
Gene: CTC01652: hypothetical protein |
Gene: CAC2142: hypothetical protein |
Gene: CBO2640: hypothetical protein |
|
|
Gene: CD0267: hypothetical protein |
Gene: Cbei_4248: hypothetical protein |
|
|
|
|
|
|
Gene: CBY_3559: hypothetical protein |
|
|
hypothetical protein |
| flgF |
Gene: CKL_1172: Flagellar basal-body rod protein FlgF |
|
Gene: Ccel_3101: Flagellar basal-body rod protein FlgF |
Gene: null: Flagellar basal-body rod protein FlgF |
Gene: CTC01651: Flagellar basal-body rod protein FlgF |
Gene: CAC2140: Flagellar basal-body rod protein FlgF |
Gene: CBO2638: Flagellar basal-body rod protein FlgF |
|
|
Gene: CD0268: Flagellar basal-body rod protein FlgF |
Gene: Cbei_4247: Flagellar basal-body rod protein FlgF |
Gene: Clos_2550: Flagellar basal-body rod protein FlgF |
|
|
|
|
|
Gene: CBY_3557: Flagellar basal-body rod protein FlgF |
Gene: CLOBOL_04544: Flagellar basal-body rod protein FlgF |
|
Flagellar basal-body rod protein FlgF |
| flgG |
Gene: CKL_1173: Flagellar basal-body rod protein FlgG |
|
Gene: Ccel_3100: Flagellar basal-body rod protein FlgG |
Gene: null: Flagellar basal-body rod protein FlgG |
Gene: CTC01650: Flagellar basal-body rod protein FlgG |
Gene: CAC2139: Flagellar basal-body rod protein FlgG |
Gene: CBO2637: Flagellar basal-body rod protein FlgG |
|
|
Gene: CD0269: Flagellar basal-body rod protein FlgG |
Gene: Cbei_4246: Flagellar basal-body rod protein FlgG |
Gene: Clos_2549: Flagellar basal-body rod protein FlgG |
|
|
|
|
|
Gene: CBY_3556: Flagellar basal-body rod protein FlgG |
Gene: CLOBOL_04543: Flagellar basal-body rod protein FlgG |
|
Flagellar basal-body rod protein FlgG |
| fliM |
|
|
Gene: Ccel_2039: Flagellar motor switch protein FliM |
Gene: null: Flagellar motor switch protein FliM |
|
|
|
|
|
Gene: CD0270: Flagellar motor switch protein FliM |
|
|
|
|
|
|
|
|
|
|
Flagellar motor switch protein FliM |
| fliN |
|
|
Gene: Ccel_2038: Flagellar motor switch protein FliN |
Gene: null: Flagellar motor switch protein FliN |
|
|
|
|
|
Gene: CD0271: Flagellar motor switch protein FliN |
|
Gene: Clos_1494: Flagellar motor switch protein FliN |
|
|
|
|
|
|
Gene: CLOBOL_04547: Flagellar motor switch protein FliN |
|
Flagellar motor switch protein FliN |
| CRON 21. | |||||||||||||||||||||
| Cbei_4033 |
*
Clostridium kluyveri DSM 555 Site: position = -242 score = 70.92 sequence = ATATTGATAATAGCA... Gene: CKL_3514: hypothetical protein |
|
|
|
|
|
|
|
|
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -229 score = 71.85 sequence = GTATTGATAATAGCA... Gene: Cbei_4033: hypothetical protein |
|
|
|
|
|
|
|
|
|
hypothetical protein |
| fabH |
*2
Clostridium kluyveri DSM 555 Site: position = -207 score = 69.89 sequence = ATTGATAATAGCACA... Gene: CKL_2324: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Gene: CKL_3513: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
|
2
Clostridium cellulolyticum H10 Gene: Ccel_2885: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Gene: Ccel_2887: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
|
|
Gene: CAC2011: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
Gene: CBO0718: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
Gene: NT01CX_0098: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
|
|
Gene: Cbei_4032: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
|
|
|
|
|
|
|
|
|
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
| mcp |
Gene: CKL_2325: Methyl-accepting chemotaxis protein |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Methyl-accepting chemotaxis protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |