Regulog GEMM_RNA_motif - Clostridiaceae

Properties
Regulator type:	RNA regulatory element
Name:	GEMM_RNA_motif
RFAM:	RF01051
Regulation mode:
Biological process:	Second messenger response
Effector:	Cyclic diguanylate
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - GEMM_RNA_motif
By effector - Cyclic diguanylate
By pathway - Second messenger response

Statistics of regulated genes
Genome	Genes	Operons
Clostridium kluyveri DSM 555	4	2
Clostridium sp. SS2/1	3	3
Clostridium cellulolyticum H10
Clostridium phytofermentans ISDg	2	2
Clostridium tetani E88	1	1
Clostridium acetobutylicum ATCC 824
Clostridium botulinum A str. ATCC 3502
Clostridium novyi NT	1	1
Clostridium perfringens ATCC 13124	2	2
Clostridium difficile 630	33	6
Clostridium beijerincki NCIMB 8052	7	4
Clostridium sp. OhILAs	1	1
Clostridium sp. L2-50
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787	1	1
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275
Clostridium butyricum 5521	4	2
Clostridium bolteae ATCC BAA-613	4	4
Clostridium bartlettii DSM 16795

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																					Function

CRON 1.
CD2797	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	2 Clostridium perfringens ATCC 13124* Site: position = -282 score = 70.73 sequence = TAATATATTGGCAAA... Gene: CPF_1073: hypothetical protein Site: position = -227 score = 67.96 sequence = TTAAAAAAATGGGCA... Gene: CPF_1489: hypothetical protein	* Clostridium difficile 630 Site: position = -210 score = 64.22 sequence = GAAAATTAAATGGCA... Gene: CD2797: hypothetical protein	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275 Gene: CLOHIR_00533: hypothetical protein	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795 Gene: CLOBAR_01122: hypothetical protein	hypothetical protein

CRON 2.
CLOSS21_00843	Clostridium kluyveri DSM 555	* Clostridium sp. SS2/1 Site: position = -474 score = 75.87 sequence = TTTATTCATAGGGCA... Gene: CLOSS21_00843: hypothetical protein	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 3.
CLONEX_03566	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	* Clostridium nexile DSM 1787 Site: position = -402 score = 25.09 sequence = ATAATCGCAAAGACA... Gene: CLONEX_03566: hypothetical protein	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 4.
Clos_1635	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	* Clostridium sp. OhILAs Site: position = -243 score = 40.02 sequence = TACAATAAATGGGCA... Gene: Clos_1635: Type IV pilin PilA	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Type IV pilin PilA

CRON 5.
CLOBAR_02389	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	* Clostridium bolteae ATCC BAA-613 Site: position = -138 score = 50.34 sequence = GTAAATATTGGGGCA... Gene: CLOBOL_00697: hypothetical protein	Clostridium bartlettii DSM 16795 Gene: CLOBAR_02389: hypothetical protein	hypothetical protein

CRON 6.
NT01CX_2393	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88 Gene: CTC00704: hypothetical protein	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	* Clostridium bolteae ATCC BAA-613 Site: position = -376 score = 34.54 sequence = TATATTCAGGTAGCA... Gene: CLOBOL_04793: hypothetical protein	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 7.
CLOBOL_02085	Clostridium kluyveri DSM 555	* Clostridium sp. SS2/1 Site: position = -173 score = 56.27 sequence = AAGATTCTAGGCAAA... Gene: CLOSS21_02742: hypothetical protein	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_02085: hypothetical protein	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 8.
Cbei_3975	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	* Clostridium tetani E88 Site: position = -87 score = 58.26 sequence = CACGATAAAGGCAAA... Gene: CTC00472: transglutaminase-like predicted protease	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_3975: transglutaminase-like predicted protease	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	transglutaminase-like predicted protease

CRON 9.
CD1990	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	* Clostridium difficile 630 Site: position = -177 score = 58.93 sequence = ATTCAGATATAGGCA... Gene: CD1990: hypothetical protein	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 10.
CLOBOL_02760	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1 Gene: CLOSS21_00656: transglutaminase domain protein	Clostridium cellulolyticum H10	* Clostridium phytofermentans ISDg Site: position = -99 score = 62.81 sequence = AACGATAATAGCAAA... Gene: null: transglutaminase domain protein	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704 Gene: CLOSCI_02626: transglutaminase domain protein	Clostridium nexile DSM 1787	Clostridium leptum DSM 753 Gene: CLOLEP_00425: transglutaminase domain protein	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_02760: transglutaminase domain protein	Clostridium bartlettii DSM 16795	transglutaminase domain protein

CRON 11.
Cbei_0874	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT Gene: NT01CX_0958: Acetyltransferase-like	Clostridium perfringens ATCC 13124	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -433 score = 65.15 sequence = ATATCAATAGGCACA... Gene: Cbei_0874: Acetyltransferase-like	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_2077: Acetyltransferase-like	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Acetyltransferase-like
tlpA	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502 Gene: CBO2468: Methyl-accepting chemotaxis protein	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0875: Methyl-accepting chemotaxis protein	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_0906: Methyl-accepting chemotaxis protein	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Methyl-accepting chemotaxis protein

CRON 12.
CD2309	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	2 Clostridium difficile 630* Site: position = -151 score = 60.68 sequence = AAAACTAAATCGGCA... Gene: CD1424: hypothetical protein Site: position = -142 score = 66.57 sequence = AACTAAATCGGCAAA... Gene: CD2309: hypothetical protein	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 13.
Cphy_1136	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	* Clostridium phytofermentans ISDg Site: position = -229 score = 67.31 sequence = TATAAATTTAGCAAA... Gene: null: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

CRON 14.
NT01CX_0209	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	* Clostridium novyi NT Site: position = -142 score = 67.48 sequence = CCAACGATAAAGGCA... Gene: NT01CX_0209: hypothetical protein	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 15.
motA	Clostridium kluyveri DSM 555 Gene: CKL_3789: Flagellar motor rotation protein MotA	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_0264: Flagellar motor rotation protein MotA	Clostridium phytofermentans ISDg	Clostridium tetani E88	2 Clostridium acetobutylicum ATCC 824 Gene: CAC1846: Flagellar motor rotation protein MotA Gene: CAC0304: Flagellar motor rotation protein MotA	Clostridium botulinum A str. ATCC 3502 Gene: CBO2227: Flagellar motor rotation protein MotA	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0744: Flagellar motor rotation protein MotA	3 Clostridium beijerincki NCIMB 8052* Site: position = -260 score = 68.56 sequence = TAAATGTTACTAGCA... Gene: Cbei_4273: Flagellar motor rotation protein MotA Gene: Cbei_4831: Flagellar motor rotation protein MotA Gene: Cbei_1594: Flagellar motor rotation protein MotA	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_0364: Flagellar motor rotation protein MotA	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar motor rotation protein MotA
motB	Clostridium kluyveri DSM 555 Gene: CKL_3788: Flagellar motor rotation protein MotB	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_0263: Flagellar motor rotation protein MotB	Clostridium phytofermentans ISDg	Clostridium tetani E88	2 Clostridium acetobutylicum ATCC 824 Gene: CAC1845: Flagellar motor rotation protein MotB Gene: CAC0305: Flagellar motor rotation protein MotB	Clostridium botulinum A str. ATCC 3502 Gene: CBO2226: Flagellar motor rotation protein MotB	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0745: Flagellar motor rotation protein MotB	3 Clostridium beijerincki NCIMB 8052 Gene: Cbei_4272: Flagellar motor rotation protein MotB Gene: Cbei_4830: Flagellar motor rotation protein MotB Gene: Cbei_1593: Flagellar motor rotation protein MotB	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_0365: Flagellar motor rotation protein MotB	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar motor rotation protein MotB

CRON 16.
CD2830	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	* Clostridium difficile 630 Site: position = -186 score = 68.73 sequence = AAATTAAATGAGGCA... Gene: CD2830: hypothetical protein	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 17.
CLOBOL_00226	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	* Clostridium bolteae ATCC BAA-613 Site: position = -182 score = 53.65 sequence = AAAAAATAATTAGCA... Gene: CLOBOL_00226: hypothetical protein	Clostridium bartlettii DSM 16795	hypothetical protein
CLOBOL_00225	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	* Clostridium bolteae ATCC BAA-613 Site: position = -394 score = 53.65 sequence = AAAAAATAATTAGCA... Gene: CLOBOL_00225: hypothetical protein	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 18.
CLOSS21_01726	Clostridium kluyveri DSM 555	* Clostridium sp. SS2/1 Site: position = -331 score = 70.48 sequence = ATTATTTTAAAGGCA... Gene: CLOSS21_01726: hypothetical protein	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein

CRON 19.
cheY	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -120 score = 62.23 sequence = TATTGAATTGGCAAA... Gene: Cbei_0537: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	* Clostridium butyricum 5521 Site: position = -148 score = 56.0 sequence = TTCATATTGGGCAAA... Gene: CBY_0554: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY

CRON 20.
flgB	Clostridium kluyveri DSM 555 Gene: CKL_1150: Flagellar basal-body rod protein FlgB	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2054: Flagellar basal-body rod protein FlgB	Clostridium phytofermentans ISDg Gene: null: Flagellar basal-body rod protein FlgB	Clostridium tetani E88 Gene: CTC01678: Flagellar basal-body rod protein FlgB	Clostridium acetobutylicum ATCC 824 Gene: CAC2165: Flagellar basal-body rod protein FlgB	Clostridium botulinum A str. ATCC 3502 Gene: CBO2665: Flagellar basal-body rod protein FlgB	Clostridium novyi NT	Clostridium perfringens ATCC 13124	* Clostridium difficile 630 Site: position = -494 score = 69.29 sequence = AACTAAATAGGCAAA... Gene: CD0245: Flagellar basal-body rod protein FlgB	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4271: Flagellar basal-body rod protein FlgB	Clostridium sp. OhILAs Gene: Clos_1476: Flagellar basal-body rod protein FlgB	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	* Clostridium butyricum 5521 Site: position = -402 score = 60.08 sequence = ATAATTGAATACGCA... Gene: CBY_3585: Flagellar basal-body rod protein FlgB	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar basal-body rod protein FlgB
flgC	Clostridium kluyveri DSM 555 Gene: CKL_1151: Flagellar basal-body rod protein FlgC	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2053: Flagellar basal-body rod protein FlgC	Clostridium phytofermentans ISDg Gene: null: Flagellar basal-body rod protein FlgC	Clostridium tetani E88 Gene: CTC01677: Flagellar basal-body rod protein FlgC	Clostridium acetobutylicum ATCC 824 Gene: CAC2164: Flagellar basal-body rod protein FlgC	Clostridium botulinum A str. ATCC 3502 Gene: CBO2664: Flagellar basal-body rod protein FlgC	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0246: Flagellar basal-body rod protein FlgC	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4270: Flagellar basal-body rod protein FlgC	Clostridium sp. OhILAs Gene: Clos_1477: Flagellar basal-body rod protein FlgC	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3584: Flagellar basal-body rod protein FlgC	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar basal-body rod protein FlgC
fliE	Clostridium kluyveri DSM 555 Gene: CKL_1152: Flagellar hook-basal body complex protein FliE	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2052: Flagellar hook-basal body complex protein FliE	Clostridium phytofermentans ISDg Gene: null: Flagellar hook-basal body complex protein FliE	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC2163: Flagellar hook-basal body complex protein FliE	Clostridium botulinum A str. ATCC 3502 Gene: CBO2663: Flagellar hook-basal body complex protein FliE	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0247: Flagellar hook-basal body complex protein FliE	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4269: Flagellar hook-basal body complex protein FliE	Clostridium sp. OhILAs Gene: Clos_1478: Flagellar hook-basal body complex protein FliE	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3583: Flagellar hook-basal body complex protein FliE	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04559: Flagellar hook-basal body complex protein FliE	Clostridium bartlettii DSM 16795	Flagellar hook-basal body complex protein FliE
fliF	Clostridium kluyveri DSM 555 Gene: CKL_1153: Flagellar M-ring protein FliF	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2051: Flagellar M-ring protein FliF	Clostridium phytofermentans ISDg Gene: null: Flagellar M-ring protein FliF	Clostridium tetani E88 Gene: CTC01676: Flagellar M-ring protein FliF	Clostridium acetobutylicum ATCC 824 Gene: CAC2162: Flagellar M-ring protein FliF	Clostridium botulinum A str. ATCC 3502 Gene: CBO2662: Flagellar M-ring protein FliF	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0248: Flagellar M-ring protein FliF	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4268: Flagellar M-ring protein FliF	Clostridium sp. OhILAs Gene: Clos_1479: Flagellar M-ring protein FliF	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04558: Flagellar M-ring protein FliF	Clostridium bartlettii DSM 16795	Flagellar M-ring protein FliF
fliG	Clostridium kluyveri DSM 555 Gene: CKL_1154: Flagellar motor switch protein FliG	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2050: Flagellar motor switch protein FliG	Clostridium phytofermentans ISDg Gene: null: Flagellar motor switch protein FliG	Clostridium tetani E88 Gene: CTC01675: Flagellar motor switch protein FliG	Clostridium acetobutylicum ATCC 824 Gene: CAC2161: Flagellar motor switch protein FliG	Clostridium botulinum A str. ATCC 3502 Gene: CBO2661: Flagellar motor switch protein FliG	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0249: Flagellar motor switch protein FliG	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4267: Flagellar motor switch protein FliG	Clostridium sp. OhILAs Gene: Clos_1480: Flagellar motor switch protein FliG	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3580: Flagellar motor switch protein FliG	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04557: Flagellar motor switch protein FliG	Clostridium bartlettii DSM 16795	Flagellar motor switch protein FliG
fliH	Clostridium kluyveri DSM 555 Gene: CKL_1155: Flagellar assembly protein FliH	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2049: Flagellar assembly protein FliH	Clostridium phytofermentans ISDg Gene: null: Flagellar assembly protein FliH	Clostridium tetani E88 Gene: CTC01674: Flagellar assembly protein FliH	Clostridium acetobutylicum ATCC 824 Gene: CAC2160: Flagellar assembly protein FliH	Clostridium botulinum A str. ATCC 3502 Gene: CBO2660: Flagellar assembly protein FliH	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0250: Flagellar assembly protein FliH	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4266: Flagellar assembly protein FliH	Clostridium sp. OhILAs Gene: Clos_1481: Flagellar assembly protein FliH	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3579: Flagellar assembly protein FliH	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04556: Flagellar assembly protein FliH	Clostridium bartlettii DSM 16795	Flagellar assembly protein FliH
fliI	Clostridium kluyveri DSM 555 Gene: CKL_1156: Flagellum-specific ATP synthase FliI	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2048: Flagellum-specific ATP synthase FliI	Clostridium phytofermentans ISDg Gene: null: Flagellum-specific ATP synthase FliI	Clostridium tetani E88 Gene: CTC01673: Flagellum-specific ATP synthase FliI	Clostridium acetobutylicum ATCC 824 Gene: CAC2159: Flagellum-specific ATP synthase FliI	Clostridium botulinum A str. ATCC 3502 Gene: CBO2659: Flagellum-specific ATP synthase FliI	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0251: Flagellum-specific ATP synthase FliI	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4265: Flagellum-specific ATP synthase FliI	Clostridium sp. OhILAs Gene: Clos_1482: Flagellum-specific ATP synthase FliI	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3578: Flagellum-specific ATP synthase FliI	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04555: Flagellum-specific ATP synthase FliI	Clostridium bartlettii DSM 16795	Flagellum-specific ATP synthase FliI
fliJ	Clostridium kluyveri DSM 555 Gene: CKL_1157: Flagellar protein FliJ	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2047: Flagellar protein FliJ	Clostridium phytofermentans ISDg Gene: null: Flagellar protein FliJ	Clostridium tetani E88 Gene: CTC01672: Flagellar protein FliJ	Clostridium acetobutylicum ATCC 824 Gene: CAC2158: Flagellar protein FliJ	Clostridium botulinum A str. ATCC 3502 Gene: CBO2658: Flagellar protein FliJ	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0252: Flagellar protein FliJ	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4264: Flagellar protein FliJ	Clostridium sp. OhILAs Gene: Clos_1483: Flagellar protein FliJ	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3577: Flagellar protein FliJ	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04554: Flagellar protein FliJ	Clostridium bartlettii DSM 16795	Flagellar protein FliJ
fliK	Clostridium kluyveri DSM 555 Gene: CKL_1158: Flagellar hook-length control protein FliK	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2045: Flagellar hook-length control protein FliK	Clostridium phytofermentans ISDg Gene: null: Flagellar hook-length control protein FliK	Clostridium tetani E88 Gene: CTC01671: Flagellar hook-length control protein FliK	Clostridium acetobutylicum ATCC 824 Gene: CAC2157: Flagellar hook-length control protein FliK	Clostridium botulinum A str. ATCC 3502 Gene: CBO2657: Flagellar hook-length control protein FliK	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0253: Flagellar hook-length control protein FliK	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4263: Flagellar hook-length control protein FliK	Clostridium sp. OhILAs Gene: Clos_1485: Flagellar hook-length control protein FliK	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3576: Flagellar hook-length control protein FliK	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04553: Flagellar hook-length control protein FliK	Clostridium bartlettii DSM 16795	Flagellar hook-length control protein FliK
flgD	Clostridium kluyveri DSM 555 Gene: CKL_1159: Flagellar basal-body rod modification protein FlgD	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2044: Flagellar basal-body rod modification protein FlgD	Clostridium phytofermentans ISDg Gene: null: Flagellar basal-body rod modification protein FlgD	Clostridium tetani E88 Gene: CTC01669: Flagellar basal-body rod modification protein FlgD	Clostridium acetobutylicum ATCC 824 Gene: CAC2156: Flagellar basal-body rod modification protein FlgD	Clostridium botulinum A str. ATCC 3502 Gene: CBO2656: Flagellar basal-body rod modification protein FlgD	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0254: Flagellar basal-body rod modification protein FlgD	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4262: Flagellar basal-body rod modification protein FlgD	Clostridium sp. OhILAs Gene: Clos_1486: Flagellar basal-body rod modification protein FlgD	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3575: Flagellar basal-body rod modification protein FlgD	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04552: Flagellar basal-body rod modification protein FlgD	Clostridium bartlettii DSM 16795	Flagellar basal-body rod modification protein FlgD
flgE	Clostridium kluyveri DSM 555 Gene: CKL_1160: Flagellar hook protein FlgE	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2042: Flagellar hook protein FlgE	Clostridium phytofermentans ISDg Gene: null: Flagellar hook protein FlgE	Clostridium tetani E88 Gene: CTC01667: Flagellar hook protein FlgE	Clostridium acetobutylicum ATCC 824 Gene: CAC2154: Flagellar hook protein FlgE	Clostridium botulinum A str. ATCC 3502 Gene: CBO2654: Flagellar hook protein FlgE	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0255: Flagellar hook protein FlgE	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4260: Flagellar hook protein FlgE	Clostridium sp. OhILAs Gene: Clos_1488: Flagellar hook protein FlgE	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3573: Flagellar hook protein FlgE	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04550: Flagellar hook protein FlgE	Clostridium bartlettii DSM 16795	Flagellar hook protein FlgE
flbD	Clostridium kluyveri DSM 555 Gene: CKL_1161: Flagellar protein FlbD	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2041: Flagellar protein FlbD	Clostridium phytofermentans ISDg Gene: null: Flagellar protein FlbD	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC2153: Flagellar protein FlbD	Clostridium botulinum A str. ATCC 3502 Gene: CBO2653: Flagellar protein FlbD	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0255A: Flagellar protein FlbD	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4259: Flagellar protein FlbD	Clostridium sp. OhILAs Gene: Clos_1489: Flagellar protein FlbD	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3572: Flagellar protein FlbD	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04549: Flagellar protein FlbD	Clostridium bartlettii DSM 16795	Flagellar protein FlbD
motA	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg Gene: null: Flagellar motor rotation protein MotA	Clostridium tetani E88 Gene: CTC01666: Flagellar motor rotation protein MotA	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502 Gene: CBO2652: Flagellar motor rotation protein MotA	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0256: Flagellar motor rotation protein MotA	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs Gene: Clos_1490: Flagellar motor rotation protein MotA	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3571: Flagellar motor rotation protein MotA	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04548: Flagellar motor rotation protein MotA	Clostridium bartlettii DSM 16795	Flagellar motor rotation protein MotA
motB	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg Gene: null: Flagellar motor rotation protein MotB	Clostridium tetani E88 Gene: CTC01665: Flagellar motor rotation protein MotB	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502 Gene: CBO2651: Flagellar motor rotation protein MotB	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0257: Flagellar motor rotation protein MotB	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs Gene: Clos_1491: Flagellar motor rotation protein MotB	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3570: Flagellar motor rotation protein MotB	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar motor rotation protein MotB
fliL	Clostridium kluyveri DSM 555 Gene: CKL_1162: Flagellar biosynthesis protein FliL	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2040: Flagellar biosynthesis protein FliL	Clostridium phytofermentans ISDg Gene: null: Flagellar biosynthesis protein FliL	Clostridium tetani E88 Gene: CTC01664: Flagellar biosynthesis protein FliL	Clostridium acetobutylicum ATCC 824 Gene: CAC2152: Flagellar biosynthesis protein FliL	Clostridium botulinum A str. ATCC 3502 Gene: CBO2650: Flagellar biosynthesis protein FliL	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0258: Flagellar biosynthesis protein FliL	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4258: Flagellar biosynthesis protein FliL	Clostridium sp. OhILAs Gene: Clos_1492: Flagellar biosynthesis protein FliL	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3569: Flagellar biosynthesis protein FliL	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar biosynthesis protein FliL
fliZ	Clostridium kluyveri DSM 555 Gene: CKL_1163: Flagellar biosynthesis protein FliZ	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2036: Flagellar biosynthesis protein FliZ	Clostridium phytofermentans ISDg Gene: null: Flagellar biosynthesis protein FliZ	Clostridium tetani E88 Gene: CTC01663: Flagellar biosynthesis protein FliZ	Clostridium acetobutylicum ATCC 824 Gene: CAC2151: Flagellar biosynthesis protein FliZ	Clostridium botulinum A str. ATCC 3502 Gene: CBO2649: Flagellar biosynthesis protein FliZ	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0259: Flagellar biosynthesis protein FliZ	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4257: Flagellar biosynthesis protein FliZ	Clostridium sp. OhILAs Gene: Clos_1496: Flagellar biosynthesis protein FliZ	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3568: Flagellar biosynthesis protein FliZ	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar biosynthesis protein FliZ
fliP	Clostridium kluyveri DSM 555 Gene: CKL_1164: Flagellar biosynthesis protein FliP	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2035: Flagellar biosynthesis protein FliP	Clostridium phytofermentans ISDg Gene: null: Flagellar biosynthesis protein FliP	Clostridium tetani E88 Gene: CTC01662: Flagellar biosynthesis protein FliP	Clostridium acetobutylicum ATCC 824 Gene: CAC2150: Flagellar biosynthesis protein FliP	Clostridium botulinum A str. ATCC 3502 Gene: CBO2648: Flagellar biosynthesis protein FliP	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0260: Flagellar biosynthesis protein FliP	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4256: Flagellar biosynthesis protein FliP	Clostridium sp. OhILAs Gene: Clos_1497: Flagellar biosynthesis protein FliP	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3567: Flagellar biosynthesis protein FliP	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar biosynthesis protein FliP
fliQ	Clostridium kluyveri DSM 555 Gene: CKL_1165: Flagellar biosynthesis protein FliQ	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2034: Flagellar biosynthesis protein FliQ	Clostridium phytofermentans ISDg Gene: null: Flagellar biosynthesis protein FliQ	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC2149: Flagellar biosynthesis protein FliQ	Clostridium botulinum A str. ATCC 3502 Gene: CBO2647: Flagellar biosynthesis protein FliQ	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0261: Flagellar biosynthesis protein FliQ	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4255: Flagellar biosynthesis protein FliQ	Clostridium sp. OhILAs Gene: Clos_1498: Flagellar biosynthesis protein FliQ	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3566: Flagellar biosynthesis protein FliQ	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar biosynthesis protein FliQ
fliR/flhB	Clostridium kluyveri DSM 555 Gene: CKL_1166: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2032: Flagellar biosynthesis protein FlhB	Clostridium phytofermentans ISDg Gene: null: Flagellar biosynthesis protein FlhB	Clostridium tetani E88 Gene: CTC01660: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB	Clostridium acetobutylicum ATCC 824 Gene: CAC2148: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB	Clostridium botulinum A str. ATCC 3502 Gene: CBO2646: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0262: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4254: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB	Clostridium sp. OhILAs Gene: Clos_1500: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3565: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
flhA	Clostridium kluyveri DSM 555 Gene: CKL_1167: Flagellar biosynthesis protein FlhA	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2031: Flagellar biosynthesis protein FlhA	Clostridium phytofermentans ISDg Gene: null: Flagellar biosynthesis protein FlhA	Clostridium tetani E88 Gene: CTC01657: Flagellar biosynthesis protein FlhA	Clostridium acetobutylicum ATCC 824 Gene: CAC2147: Flagellar biosynthesis protein FlhA	Clostridium botulinum A str. ATCC 3502 Gene: CBO2645: Flagellar biosynthesis protein FlhA	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0263: Flagellar biosynthesis protein FlhA	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4253: Flagellar biosynthesis protein FlhA	Clostridium sp. OhILAs Gene: Clos_1501: Flagellar biosynthesis protein FlhA	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3564: Flagellar biosynthesis protein FlhA	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04546: Flagellar biosynthesis protein FlhA	Clostridium bartlettii DSM 16795	Flagellar biosynthesis protein FlhA
flhF	Clostridium kluyveri DSM 555 Gene: CKL_1168: Flagellar biosynthesis protein FlhF	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2030: Flagellar biosynthesis protein FlhF	Clostridium phytofermentans ISDg Gene: null: Flagellar biosynthesis protein FlhF	Clostridium tetani E88 Gene: CTC01656: Flagellar biosynthesis protein FlhF	Clostridium acetobutylicum ATCC 824 Gene: CAC2146: Flagellar biosynthesis protein FlhF	Clostridium botulinum A str. ATCC 3502 Gene: CBO2644: Flagellar biosynthesis protein FlhF	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0264: Flagellar biosynthesis protein FlhF	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4252: Flagellar biosynthesis protein FlhF	Clostridium sp. OhILAs Gene: Clos_1502: Flagellar biosynthesis protein FlhF	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3563: Flagellar biosynthesis protein FlhF	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar biosynthesis protein FlhF
fleN	Clostridium kluyveri DSM 555 Gene: CKL_1169: Flagellar synthesis regulator FleN	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2029: Flagellar synthesis regulator FleN	Clostridium phytofermentans ISDg Gene: null: Flagellar synthesis regulator FleN	Clostridium tetani E88 Gene: CTC01655: Flagellar synthesis regulator FleN	Clostridium acetobutylicum ATCC 824 Gene: CAC2145: Flagellar synthesis regulator FleN	Clostridium botulinum A str. ATCC 3502 Gene: CBO2643: Flagellar synthesis regulator FleN	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0265: Flagellar synthesis regulator FleN	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4251: Flagellar synthesis regulator FleN	Clostridium sp. OhILAs Gene: Clos_1503: Flagellar synthesis regulator FleN	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3562: Flagellar synthesis regulator FleN	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar synthesis regulator FleN
fliA	Clostridium kluyveri DSM 555 Gene: CKL_1170: RNA polymerase sigma factor for flagellar operon fliA	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2022: RNA polymerase sigma factor for flagellar operon fliA	Clostridium phytofermentans ISDg	Clostridium tetani E88 Gene: CTC01653: RNA polymerase sigma factor for flagellar operon fliA	Clostridium acetobutylicum ATCC 824 Gene: CAC2143: RNA polymerase sigma factor for flagellar operon fliA	Clostridium botulinum A str. ATCC 3502 Gene: CBO2641: RNA polymerase sigma factor for flagellar operon fliA	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0266: RNA polymerase sigma factor for flagellar operon fliA	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4249: RNA polymerase sigma factor for flagellar operon fliA	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3560: RNA polymerase sigma factor for flagellar operon fliA	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04545: RNA polymerase sigma factor for flagellar operon fliA	Clostridium bartlettii DSM 16795	RNA polymerase sigma factor for flagellar operon fliA
Cbei_4248	Clostridium kluyveri DSM 555 Gene: CKL_1171: hypothetical protein	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88 Gene: CTC01652: hypothetical protein	Clostridium acetobutylicum ATCC 824 Gene: CAC2142: hypothetical protein	Clostridium botulinum A str. ATCC 3502 Gene: CBO2640: hypothetical protein	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0267: hypothetical protein	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4248: hypothetical protein	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3559: hypothetical protein	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein
flgF	Clostridium kluyveri DSM 555 Gene: CKL_1172: Flagellar basal-body rod protein FlgF	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_3101: Flagellar basal-body rod protein FlgF	Clostridium phytofermentans ISDg Gene: null: Flagellar basal-body rod protein FlgF	Clostridium tetani E88 Gene: CTC01651: Flagellar basal-body rod protein FlgF	Clostridium acetobutylicum ATCC 824 Gene: CAC2140: Flagellar basal-body rod protein FlgF	Clostridium botulinum A str. ATCC 3502 Gene: CBO2638: Flagellar basal-body rod protein FlgF	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0268: Flagellar basal-body rod protein FlgF	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4247: Flagellar basal-body rod protein FlgF	Clostridium sp. OhILAs Gene: Clos_2550: Flagellar basal-body rod protein FlgF	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3557: Flagellar basal-body rod protein FlgF	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04544: Flagellar basal-body rod protein FlgF	Clostridium bartlettii DSM 16795	Flagellar basal-body rod protein FlgF
flgG	Clostridium kluyveri DSM 555 Gene: CKL_1173: Flagellar basal-body rod protein FlgG	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_3100: Flagellar basal-body rod protein FlgG	Clostridium phytofermentans ISDg Gene: null: Flagellar basal-body rod protein FlgG	Clostridium tetani E88 Gene: CTC01650: Flagellar basal-body rod protein FlgG	Clostridium acetobutylicum ATCC 824 Gene: CAC2139: Flagellar basal-body rod protein FlgG	Clostridium botulinum A str. ATCC 3502 Gene: CBO2637: Flagellar basal-body rod protein FlgG	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0269: Flagellar basal-body rod protein FlgG	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4246: Flagellar basal-body rod protein FlgG	Clostridium sp. OhILAs Gene: Clos_2549: Flagellar basal-body rod protein FlgG	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3556: Flagellar basal-body rod protein FlgG	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04543: Flagellar basal-body rod protein FlgG	Clostridium bartlettii DSM 16795	Flagellar basal-body rod protein FlgG
fliM	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2039: Flagellar motor switch protein FliM	Clostridium phytofermentans ISDg Gene: null: Flagellar motor switch protein FliM	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0270: Flagellar motor switch protein FliM	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Flagellar motor switch protein FliM
fliN	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1	Clostridium cellulolyticum H10 Gene: Ccel_2038: Flagellar motor switch protein FliN	Clostridium phytofermentans ISDg Gene: null: Flagellar motor switch protein FliN	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630 Gene: CD0271: Flagellar motor switch protein FliN	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs Gene: Clos_1494: Flagellar motor switch protein FliN	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04547: Flagellar motor switch protein FliN	Clostridium bartlettii DSM 16795	Flagellar motor switch protein FliN

CRON 21.
Cbei_4033	* Clostridium kluyveri DSM 555 Site: position = -242 score = 70.92 sequence = ATATTGATAATAGCA... Gene: CKL_3514: hypothetical protein	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -229 score = 71.85 sequence = GTATTGATAATAGCA... Gene: Cbei_4033: hypothetical protein	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	hypothetical protein
fabH	2 Clostridium kluyveri DSM 555* Site: position = -207 score = 69.89 sequence = ATTGATAATAGCACA... Gene: CKL_2324: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Gene: CKL_3513: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	Clostridium sp. SS2/1	2 Clostridium cellulolyticum H10 Gene: Ccel_2885: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) Gene: Ccel_2887: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824 Gene: CAC2011: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	Clostridium botulinum A str. ATCC 3502 Gene: CBO0718: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	Clostridium novyi NT Gene: NT01CX_0098: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4032: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
mcp	Clostridium kluyveri DSM 555 Gene: CKL_2325: Methyl-accepting chemotaxis protein	Clostridium sp. SS2/1	Clostridium cellulolyticum H10	Clostridium phytofermentans ISDg	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT	Clostridium perfringens ATCC 13124	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704	Clostridium nexile DSM 1787	Clostridium leptum DSM 753	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521	Clostridium bolteae ATCC BAA-613	Clostridium bartlettii DSM 16795	Methyl-accepting chemotaxis protein