Regulon of GEMM_RNA_motif in Clostridium difficile 630

Properties
Regulator type:	RNA regulatory element
Name:	GEMM_RNA_motif
RFAM:	RF01051
Regulation mode:
Biological process:	Second messenger response
Effector:	Cyclic diguanylate
Regulog:	GEMM_RNA_motif - Clostridiaceae
Under regulation:
- Genes	33
- Operons	6

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - GEMM_RNA_motif
By effector - Cyclic diguanylate
By pathway - Second messenger response

Regulated operons
	Locus Tag	Name	Function
Position: -177 Score: 58.9 Sequence: ATTCAGATATAGGCA... Locus tag: CD1990 Name: null Funciton: hypothetical protein
	CD1990		hypothetical protein
Position: -142 Score: 66.6 Sequence: AACTAAATCGGCAAA... Locus tag: CD2309 Name: CD2309 Funciton: hypothetical protein
	CD2309	CD2309	hypothetical protein
Position: -151 Score: 60.7 Sequence: AAAACTAAATCGGCA... Locus tag: CD1424 Name: CD2309 Funciton: hypothetical protein
	CD1424	CD2309	hypothetical protein
Position: -186 Score: 68.7 Sequence: AAATTAAATGAGGCA... Locus tag: CD2830 Name: null Funciton: hypothetical protein
	CD2830		hypothetical protein
Position: -494 Score: 69.3 Sequence: AACTAAATAGGCAAA... Locus tag: CD0245 Name: flgB Funciton: Flagellar basal-body rod protein FlgB Locus tag: CD0246 Name: flgC Funciton: Flagellar basal-body rod protein FlgC Locus tag: CD0247 Name: fliE Funciton: Flagellar hook-basal body complex protein FliE Locus tag: CD0248 Name: fliF Funciton: Flagellar M-ring protein FliF Locus tag: CD0249 Name: fliG Funciton: Flagellar motor switch protein FliG Locus tag: CD0250 Name: fliH Funciton: Flagellar assembly protein FliH Locus tag: CD0251 Name: fliI Funciton: Flagellum-specific ATP synthase FliI Locus tag: CD0252 Name: fliJ Funciton: Flagellar protein FliJ Locus tag: CD0253 Name: fliK Funciton: Flagellar hook-length control protein FliK Locus tag: CD0254 Name: flgD Funciton: Flagellar basal-body rod modification protein FlgD Locus tag: CD0255 Name: flgE Funciton: Flagellar hook protein FlgE Locus tag: CD0255A Name: flbD Funciton: Flagellar protein FlbD Locus tag: CD0256 Name: motA Funciton: Flagellar motor rotation protein MotA Locus tag: CD0257 Name: motB Funciton: Flagellar motor rotation protein MotB Locus tag: CD0258 Name: fliL Funciton: Flagellar biosynthesis protein FliL Locus tag: CD0259 Name: fliZ Funciton: Flagellar biosynthesis protein FliZ Locus tag: CD0260 Name: fliP Funciton: Flagellar biosynthesis protein FliP Locus tag: CD0261 Name: fliQ Funciton: Flagellar biosynthesis protein FliQ Locus tag: CD0262 Name: fliR/flhB Funciton: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB Locus tag: CD0263 Name: flhA Funciton: Flagellar biosynthesis protein FlhA Locus tag: CD0264 Name: flhF Funciton: Flagellar biosynthesis protein FlhF Locus tag: CD0265 Name: fleN Funciton: Flagellar synthesis regulator FleN Locus tag: CD0266 Name: fliA Funciton: RNA polymerase sigma factor for flagellar operon fliA Locus tag: CD0267 Name: Cbei_4248 Funciton: hypothetical protein Locus tag: CD0268 Name: flgF Funciton: Flagellar basal-body rod protein FlgF Locus tag: CD0269 Name: flgG Funciton: Flagellar basal-body rod protein FlgG Locus tag: CD0270 Name: fliM Funciton: Flagellar motor switch protein FliM Locus tag: CD0271 Name: fliN Funciton: Flagellar motor switch protein FliN
	CD0245	flgB	Flagellar basal-body rod protein FlgB
	CD0246	flgC	Flagellar basal-body rod protein FlgC
	CD0247	fliE	Flagellar hook-basal body complex protein FliE
	CD0248	fliF	Flagellar M-ring protein FliF
	CD0249	fliG	Flagellar motor switch protein FliG
	CD0250	fliH	Flagellar assembly protein FliH
	CD0251	fliI	Flagellum-specific ATP synthase FliI
	CD0252	fliJ	Flagellar protein FliJ
	CD0253	fliK	Flagellar hook-length control protein FliK
	CD0254	flgD	Flagellar basal-body rod modification protein FlgD
	CD0255	flgE	Flagellar hook protein FlgE
	CD0255A	flbD	Flagellar protein FlbD
	CD0256	motA	Flagellar motor rotation protein MotA
	CD0257	motB	Flagellar motor rotation protein MotB
	CD0258	fliL	Flagellar biosynthesis protein FliL
	CD0259	fliZ	Flagellar biosynthesis protein FliZ
	CD0260	fliP	Flagellar biosynthesis protein FliP
	CD0261	fliQ	Flagellar biosynthesis protein FliQ
	CD0262	fliR/flhB	Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
	CD0263	flhA	Flagellar biosynthesis protein FlhA
	CD0264	flhF	Flagellar biosynthesis protein FlhF
	CD0265	fleN	Flagellar synthesis regulator FleN
	CD0266	fliA	RNA polymerase sigma factor for flagellar operon fliA
	CD0267	Cbei_4248	hypothetical protein
	CD0268	flgF	Flagellar basal-body rod protein FlgF
	CD0269	flgG	Flagellar basal-body rod protein FlgG
	CD0270	fliM	Flagellar motor switch protein FliM
	CD0271	fliN	Flagellar motor switch protein FliN
Position: -210 Score: 64.2 Sequence: GAAAATTAAATGGCA... Locus tag: CD2797 Name: CD2797 Funciton: hypothetical protein
	CD2797	CD2797	hypothetical protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of GEMM_RNA_motif in Clostridium difficile 630

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --