Regulon of GEMM_RNA_motif in Clostridium difficile 630
| Regulator type: | RNA regulatory element |
| Name: | GEMM_RNA_motif |
| RFAM: | RF01051 |
| Regulation mode: | |
| Biological process: | Second messenger response |
| Effector: | Cyclic diguanylate |
| Regulog: | GEMM_RNA_motif - Clostridiaceae |
| Under regulation: | |
| - Genes | 33 |
| - Operons | 6 |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - GEMM_RNA_motif
- By effector - Cyclic diguanylate
- By pathway - Second messenger response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -177
Score: 58.9 Sequence: ATTCAGATATAGGCA...
Locus tag: CD1990
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -142
Score: 66.6 Sequence: AACTAAATCGGCAAA...
Locus tag: CD2309
Name: CD2309 Funciton: hypothetical protein |
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CD2309
|
hypothetical protein
|
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Position: -151
Score: 60.7 Sequence: AAAACTAAATCGGCA...
Locus tag: CD1424
Name: CD2309 Funciton: hypothetical protein |
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CD2309
|
hypothetical protein
|
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Position: -186
Score: 68.7 Sequence: AAATTAAATGAGGCA...
Locus tag: CD2830
Name: null Funciton: hypothetical protein |
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hypothetical protein
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Position: -494
Score: 69.3 Sequence: AACTAAATAGGCAAA...
Locus tag: CD0245
Name: flgB Funciton: Flagellar basal-body rod protein FlgB
Locus tag: CD0246
Name: flgC Funciton: Flagellar basal-body rod protein FlgC
Locus tag: CD0247
Name: fliE Funciton: Flagellar hook-basal body complex protein FliE
Locus tag: CD0248
Name: fliF Funciton: Flagellar M-ring protein FliF
Locus tag: CD0249
Name: fliG Funciton: Flagellar motor switch protein FliG
Locus tag: CD0250
Name: fliH Funciton: Flagellar assembly protein FliH
Locus tag: CD0251
Name: fliI Funciton: Flagellum-specific ATP synthase FliI
Locus tag: CD0252
Name: fliJ Funciton: Flagellar protein FliJ
Locus tag: CD0253
Name: fliK Funciton: Flagellar hook-length control protein FliK
Locus tag: CD0254
Name: flgD Funciton: Flagellar basal-body rod modification protein FlgD
Locus tag: CD0255
Name: flgE Funciton: Flagellar hook protein FlgE
Locus tag: CD0255A
Name: flbD Funciton: Flagellar protein FlbD
Locus tag: CD0256
Name: motA Funciton: Flagellar motor rotation protein MotA
Locus tag: CD0257
Name: motB Funciton: Flagellar motor rotation protein MotB
Locus tag: CD0258
Name: fliL Funciton: Flagellar biosynthesis protein FliL
Locus tag: CD0259
Name: fliZ Funciton: Flagellar biosynthesis protein FliZ
Locus tag: CD0260
Name: fliP Funciton: Flagellar biosynthesis protein FliP
Locus tag: CD0261
Name: fliQ Funciton: Flagellar biosynthesis protein FliQ
Locus tag: CD0262
Name: fliR/flhB Funciton: Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
Locus tag: CD0263
Name: flhA Funciton: Flagellar biosynthesis protein FlhA
Locus tag: CD0264
Name: flhF Funciton: Flagellar biosynthesis protein FlhF
Locus tag: CD0265
Name: fleN Funciton: Flagellar synthesis regulator FleN
Locus tag: CD0266
Name: fliA Funciton: RNA polymerase sigma factor for flagellar operon fliA
Locus tag: CD0267
Name: Cbei_4248 Funciton: hypothetical protein
Locus tag: CD0268
Name: flgF Funciton: Flagellar basal-body rod protein FlgF
Locus tag: CD0269
Name: flgG Funciton: Flagellar basal-body rod protein FlgG
Locus tag: CD0270
Name: fliM Funciton: Flagellar motor switch protein FliM
Locus tag: CD0271
Name: fliN Funciton: Flagellar motor switch protein FliN |
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flgB
|
Flagellar basal-body rod protein FlgB
|
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flgC
|
Flagellar basal-body rod protein FlgC
|
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fliE
|
Flagellar hook-basal body complex protein FliE
|
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|
fliF
|
Flagellar M-ring protein FliF
|
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fliG
|
Flagellar motor switch protein FliG
|
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fliH
|
Flagellar assembly protein FliH
|
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fliI
|
Flagellum-specific ATP synthase FliI
|
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fliJ
|
Flagellar protein FliJ
|
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fliK
|
Flagellar hook-length control protein FliK
|
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flgD
|
Flagellar basal-body rod modification protein FlgD
|
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flgE
|
Flagellar hook protein FlgE
|
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flbD
|
Flagellar protein FlbD
|
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motA
|
Flagellar motor rotation protein MotA
|
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motB
|
Flagellar motor rotation protein MotB
|
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fliL
|
Flagellar biosynthesis protein FliL
|
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fliZ
|
Flagellar biosynthesis protein FliZ
|
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fliP
|
Flagellar biosynthesis protein FliP
|
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fliQ
|
Flagellar biosynthesis protein FliQ
|
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fliR/flhB
|
Flagellar biosynthesis protein FliR / Flagellar biosynthesis protein FlhB
|
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flhA
|
Flagellar biosynthesis protein FlhA
|
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flhF
|
Flagellar biosynthesis protein FlhF
|
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fleN
|
Flagellar synthesis regulator FleN
|
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fliA
|
RNA polymerase sigma factor for flagellar operon fliA
|
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Cbei_4248
|
hypothetical protein
|
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flgF
|
Flagellar basal-body rod protein FlgF
|
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flgG
|
Flagellar basal-body rod protein FlgG
|
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fliM
|
Flagellar motor switch protein FliM
|
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fliN
|
Flagellar motor switch protein FliN
|
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Position: -210
Score: 64.2 Sequence: GAAAATTAAATGGCA...
Locus tag: CD2797
Name: CD2797 Funciton: hypothetical protein |
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CD2797
|
hypothetical protein
|
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |