Regulog L21_leader - Clostridiaceae

Properties
Regulator type:	RNA regulatory element
Name:	L21_leader
RFAM:	RF00559
Regulation mode:
Biological process:	Ribosome biogenesis
Effector:
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - L21_leader
By pathway - Ribosome biogenesis

Statistics of regulated genes
Genome	Genes	Operons
Clostridium kluyveri DSM 555	3	1
Clostridium sp. SS2/1
Clostridium cellulolyticum H10
Clostridium phytofermentans ISDg
Clostridium tetani E88	3	1
Clostridium acetobutylicum ATCC 824	3	1
Clostridium botulinum A str. ATCC 3502	3	1
Clostridium novyi NT	3	1
Clostridium perfringens ATCC 13124	3	1
Clostridium difficile 630	3	1
Clostridium beijerincki NCIMB 8052
Clostridium sp. OhILAs	3	1
Clostridium sp. L2-50	3	1
Clostridium scindens ATCC 35704	3	1
Clostridium nexile DSM 1787	3	1
Clostridium leptum DSM 753	3	1
Clostridium hiranonis DSM 13275	3	1
Clostridium butyricum 5521	3	1
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																					Function

CRON 1.
rplU	* Clostridium kluyveri DSM 555 Site: position = -95 score = 26.79 sequence = GACAGCTGTAGACCG... Gene: CKL_0879: LSU ribosomal protein L21p	Clostridium sp. SS2/1 Gene: CLOSS21_01922: LSU ribosomal protein L21p	Clostridium cellulolyticum H10 Gene: Ccel_1320: LSU ribosomal protein L21p	Clostridium phytofermentans ISDg Gene: null: LSU ribosomal protein L21p	* Clostridium tetani E88 Site: position = -87 score = 35.12 sequence = ATGGCATTTGTAAGC... Gene: CTC02060: LSU ribosomal protein L21p	* Clostridium acetobutylicum ATCC 824 Site: position = -90 score = 28.79 sequence = CACATGTAGACCGCA... Gene: CAC1257: LSU ribosomal protein L21p	* Clostridium botulinum A str. ATCC 3502 Site: position = -85 score = 31.97 sequence = GGCTTTTGTAGACCG... Gene: CBO2989: LSU ribosomal protein L21p	* Clostridium novyi NT Site: position = -89 score = 22.54 sequence = GGCATTTGTAAACCG... Gene: NT01CX_0081: LSU ribosomal protein L21p	* Clostridium perfringens ATCC 13124 Site: position = -89 score = 27.02 sequence = GGCTTTTGTAAACCG... Gene: CPF_2385: LSU ribosomal protein L21p	* Clostridium difficile 630 Site: position = -87 score = 32.99 sequence = AATAATTGTAATGCC... Gene: CD1161: LSU ribosomal protein L21p	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0508: LSU ribosomal protein L21p	* Clostridium sp. OhILAs Site: position = -81 score = 17.65 sequence = TATCTGTAGGTAGCC... Gene: Clos_1753: LSU ribosomal protein L21p	* Clostridium sp. L2-50 Site: position = -86 score = 24.41 sequence = TACTAGTGTGCCGCA... Gene: CLOL250_00205: LSU ribosomal protein L21p	* Clostridium scindens ATCC 35704 Site: position = -79 score = 24.55 sequence = CCAGTATGCCGCACA... Gene: CLOSCI_00483: LSU ribosomal protein L21p	* Clostridium nexile DSM 1787 Site: position = -73 score = 26.36 sequence = CCGCACAATGAGGTT... Gene: CLONEX_01673: LSU ribosomal protein L21p	* Clostridium leptum DSM 753 Site: position = -88 score = 24.29 sequence = ATCATTGATAAGCCG... Gene: CLOLEP_02654: LSU ribosomal protein L21p	* Clostridium hiranonis DSM 13275 Site: position = -82 score = 31.3 sequence = AATAACTGTAATGCC... Gene: CLOHIR_01973: LSU ribosomal protein L21p	* Clostridium butyricum 5521 Site: position = -80 score = 20.28 sequence = GCACACGTAAGGTTT... Gene: CBY_4003: LSU ribosomal protein L21p	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_03838: LSU ribosomal protein L21p	* Clostridium bartlettii DSM 16795 Site: position = -89 score = 27.71 sequence = TTAATAACTGTAATG... Gene: CLOBAR_01486: LSU ribosomal protein L21p	LSU ribosomal protein L21p
ysxB	Clostridium kluyveri DSM 555 Gene: CKL_0880: FIG139598: Potential ribosomal protein	Clostridium sp. SS2/1 Gene: CLOSS21_01921: FIG139598: Potential ribosomal protein	Clostridium cellulolyticum H10 Gene: Ccel_1321: FIG139598: Potential ribosomal protein	Clostridium phytofermentans ISDg Gene: null: FIG139598: Potential ribosomal protein	Clostridium tetani E88 Gene: CTC02059: FIG139598: Potential ribosomal protein	Clostridium acetobutylicum ATCC 824 Gene: CAC1258: FIG139598: Potential ribosomal protein	Clostridium botulinum A str. ATCC 3502 Gene: CBO2988: FIG139598: Potential ribosomal protein	Clostridium novyi NT Gene: NT01CX_0080: FIG139598: Potential ribosomal protein	Clostridium perfringens ATCC 13124 Gene: CPF_2384: FIG139598: Potential ribosomal protein	Clostridium difficile 630 Gene: CD1162: FIG139598: Potential ribosomal protein	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0509: FIG139598: Potential ribosomal protein	Clostridium sp. OhILAs Gene: Clos_1752: FIG139598: Potential ribosomal protein	Clostridium sp. L2-50 Gene: CLOL250_00204: FIG139598: Potential ribosomal protein	Clostridium scindens ATCC 35704 Gene: CLOSCI_00484: FIG139598: Potential ribosomal protein	Clostridium nexile DSM 1787 Gene: CLONEX_01672: FIG139598: Potential ribosomal protein	Clostridium leptum DSM 753 Gene: CLOLEP_02655: FIG139598: Potential ribosomal protein	Clostridium hiranonis DSM 13275 Gene: CLOHIR_01974: FIG139598: Potential ribosomal protein	Clostridium butyricum 5521 Gene: CBY_4004: FIG139598: Potential ribosomal protein	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_03837: FIG139598: Potential ribosomal protein	Clostridium bartlettii DSM 16795 Gene: CLOBAR_01485: FIG139598: Potential ribosomal protein	FIG139598: Potential ribosomal protein
rpmA	Clostridium kluyveri DSM 555 Gene: CKL_0881: LSU ribosomal protein L27p	Clostridium sp. SS2/1 Gene: CLOSS21_01920: LSU ribosomal protein L27p	Clostridium cellulolyticum H10 Gene: Ccel_1322: LSU ribosomal protein L27p	Clostridium phytofermentans ISDg Gene: null: LSU ribosomal protein L27p	Clostridium tetani E88 Gene: CTC02058: LSU ribosomal protein L27p	Clostridium acetobutylicum ATCC 824 Gene: CAC1259: LSU ribosomal protein L27p	Clostridium botulinum A str. ATCC 3502 Gene: CBO2987: LSU ribosomal protein L27p	Clostridium novyi NT Gene: NT01CX_0079: LSU ribosomal protein L27p	Clostridium perfringens ATCC 13124 Gene: CPF_2383: LSU ribosomal protein L27p	Clostridium difficile 630 Gene: CD1163: LSU ribosomal protein L27p	Clostridium beijerincki NCIMB 8052 Gene: Cbei_0510: LSU ribosomal protein L27p	Clostridium sp. OhILAs Gene: Clos_1751: LSU ribosomal protein L27p	Clostridium sp. L2-50 Gene: CLOL250_00203: LSU ribosomal protein L27p	Clostridium scindens ATCC 35704 Gene: CLOSCI_00485: LSU ribosomal protein L27p	Clostridium nexile DSM 1787 Gene: CLONEX_01671: LSU ribosomal protein L27p	Clostridium leptum DSM 753 Gene: CLOLEP_02656: LSU ribosomal protein L27p	Clostridium hiranonis DSM 13275 Gene: CLOHIR_01975: LSU ribosomal protein L27p	Clostridium butyricum 5521 Gene: CBY_4005: LSU ribosomal protein L27p	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_03836: LSU ribosomal protein L27p	Clostridium bartlettii DSM 16795 Gene: CLOBAR_01484: LSU ribosomal protein L27p	LSU ribosomal protein L27p