Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ysxB gene

Properties
Regulator type: RNA regulatory element
Name: L21_leader
RFAM: RF00559
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Clostridium acetobutylicum ATCC 824
Position: -90
Score: 28.79
Sequence: CACATGTAGACCGCA...
Locus tag: CAC1257
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CAC1258
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CAC1259
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -90 28.8 CACATGTAGACCGCA... CAC1257
Clostridium bartlettii DSM 16795
Position: -89
Score: 27.71
Sequence: TTAATAACTGTAATG...
Locus tag: CLOBAR_01486
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CLOBAR_01485
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOBAR_01484
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -89 27.7 TTAATAACTGTAATG... CLOBAR_01486
Clostridium botulinum A str. ATCC 3502
Position: -85
Score: 31.97
Sequence: GGCTTTTGTAGACCG...
Locus tag: CBO2989
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CBO2988
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CBO2987
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -85 32 GGCTTTTGTAGACCG... CBO2989
Clostridium butyricum 5521
Position: -80
Score: 20.28
Sequence: GCACACGTAAGGTTT...
Locus tag: CBY_4003
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CBY_4004
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CBY_4005
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -80 20.3 GCACACGTAAGGTTT... CBY_4003
Clostridium difficile 630
Position: -87
Score: 32.99
Sequence: AATAATTGTAATGCC...
Locus tag: CD1161
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CD1162
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CD1163
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -87 33 AATAATTGTAATGCC... CD1161
Clostridium hiranonis DSM 13275
Position: -82
Score: 31.3
Sequence: AATAACTGTAATGCC...
Locus tag: CLOHIR_01973
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CLOHIR_01974
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOHIR_01975
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -82 31.3 AATAACTGTAATGCC... CLOHIR_01973
Clostridium kluyveri DSM 555
Position: -95
Score: 26.79
Sequence: GACAGCTGTAGACCG...
Locus tag: CKL_0879
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CKL_0880
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CKL_0881
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -95 26.8 GACAGCTGTAGACCG... CKL_0879
Clostridium leptum DSM 753
Position: -88
Score: 24.29
Sequence: ATCATTGATAAGCCG...
Locus tag: CLOLEP_02654
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CLOLEP_02655
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOLEP_02656
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -88 24.3 ATCATTGATAAGCCG... CLOLEP_02654
Clostridium nexile DSM 1787
Position: -73
Score: 26.36
Sequence: CCGCACAATGAGGTT...
Locus tag: CLONEX_01673
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CLONEX_01672
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLONEX_01671
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -73 26.4 CCGCACAATGAGGTT... CLONEX_01673
Clostridium novyi NT
Position: -89
Score: 22.54
Sequence: GGCATTTGTAAACCG...
Locus tag: NT01CX_0081
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: NT01CX_0080
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: NT01CX_0079
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -89 22.5 GGCATTTGTAAACCG... NT01CX_0081
Clostridium perfringens ATCC 13124
Position: -89
Score: 27.02
Sequence: GGCTTTTGTAAACCG...
Locus tag: CPF_2385
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CPF_2384
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CPF_2383
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -89 27 GGCTTTTGTAAACCG... CPF_2385
Clostridium scindens ATCC 35704
Position: -79
Score: 24.55
Sequence: CCAGTATGCCGCACA...
Locus tag: CLOSCI_00483
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CLOSCI_00484
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOSCI_00485
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -79 24.5 CCAGTATGCCGCACA... CLOSCI_00483
Clostridium sp. L2-50
Position: -86
Score: 24.41
Sequence: TACTAGTGTGCCGCA...
Locus tag: CLOL250_00205
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CLOL250_00204
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CLOL250_00203
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -86 24.4 TACTAGTGTGCCGCA... CLOL250_00205
Clostridium sp. OhILAs
Position: -81
Score: 17.65
Sequence: TATCTGTAGGTAGCC...
Locus tag: Clos_1753
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: Clos_1752
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: Clos_1751
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -81 17.6 TATCTGTAGGTAGCC... Clos_1753
Clostridium tetani E88
Position: -87
Score: 35.12
Sequence: ATGGCATTTGTAAGC...
Locus tag: CTC02060
Name: rplU
Funciton: LSU ribosomal protein L21p
Locus tag: CTC02059
Name: ysxB
Funciton: FIG139598: Potential ribosomal protein
Locus tag: CTC02058
Name: rpmA
Funciton: LSU ribosomal protein L27p
rplU-ysxB-rpmA -87 35.1 ATGGCATTTGTAAGC... CTC02060
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