Regulog T-box(Leu) - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Leu-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - Leu-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 9 | 5 |
| Clostridium sp. SS2/1 | 1 | 1 |
| Clostridium cellulolyticum H10 | 6 | 2 |
| Clostridium phytofermentans ISDg | 2 | 2 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 2 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
| Clostridium novyi NT | 2 | 2 |
| Clostridium perfringens ATCC 13124 | 1 | 1 |
| Clostridium difficile 630 | 5 | 2 |
| Clostridium beijerincki NCIMB 8052 | 1 | 1 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium sp. L2-50 | 1 | 1 |
| Clostridium scindens ATCC 35704 | 1 | 1 |
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium leptum DSM 753 | 1 | 1 |
| Clostridium hiranonis DSM 13275 | 1 | 1 |
| Clostridium butyricum 5521 | 3 | 2 |
| Clostridium bolteae ATCC BAA-613 | 1 | 1 |
| Clostridium bartlettii DSM 16795 | 1 | 1 |
| Genes | Function | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||||||
| leuS |
*
Clostridium kluyveri DSM 555 Site: position = -371 score = 118.75 sequence = ACTTAGCTTTGAAGA... Gene: CKL_3605: Leucyl-tRNA synthetase (EC 6.1.1.4) |
Gene: CLOSS21_01939: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Clostridium cellulolyticum H10 Site: position = -258 score = 104.98 sequence = TTAAAGTTATGAAGC... Gene: Ccel_3454: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium phytofermentans ISDg Site: position = -266 score = 127.58 sequence = AAAAAGTTATGATTA... Gene: null: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium tetani E88 Site: position = -218 score = 123.16 sequence = ATGAAAAGCTATGAG... Gene: CTC00337: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium acetobutylicum ATCC 824 Site: position = -244 score = 129.12 sequence = TTTAAAAGCTTTGAA... Gene: CAC0646: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium botulinum A str. ATCC 3502 Site: position = -308 score = 134.44 sequence = ATTAAAGGCTTTGAA... Gene: CBO0186: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium novyi NT Site: position = -270 score = 124.94 sequence = TGTTATTGCTTTGAA... Gene: NT01CX_1372: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium perfringens ATCC 13124 Site: position = -297 score = 138.51 sequence = ATTAAAAGCTTTGAT... Gene: CPF_0657: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium difficile 630 Site: position = -302 score = 78.6 sequence = TTGAATAGACTAGAG... Gene: CD2521: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium beijerincki NCIMB 8052 Site: position = -382 score = 106.02 sequence = ATTGTGCGATGAATA... Gene: Cbei_4590: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium sp. OhILAs Site: position = -301 score = 104.31 sequence = AAAAGTTGCTGTGAA... Gene: Clos_2587: Leucyl-tRNA synthetase (EC 6.1.1.4) |
Gene: CLOL250_02927: Leucyl-tRNA synthetase (EC 6.1.1.4) |
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Clostridium scindens ATCC 35704 Site: position = -198 score = 109.61 sequence = TAGAAACGAAGAAGA... Gene: CLOSCI_03648: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Clostridium nexile DSM 1787 Site: position = -419 score = 96.97 sequence = TCAAAAAACATAGAT... Gene: CLONEX_03143: Leucyl-tRNA synthetase (EC 6.1.1.4) |
Gene: CLOLEP_03285: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Clostridium hiranonis DSM 13275 Site: position = -285 score = 92.59 sequence = AGACAGTCTGAAGTA... Gene: CLOHIR_01984: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Clostridium butyricum 5521 Site: position = -379 score = 122.73 sequence = ATATTAAGCTATGAG... Gene: CBY_1582: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Clostridium bolteae ATCC BAA-613 Site: position = -364 score = 98.06 sequence = TGCAAATACGCAGAT... Gene: CLOBOL_01934: Leucyl-tRNA synthetase (EC 6.1.1.4) |
*
Clostridium bartlettii DSM 16795 Site: position = -299 score = 87.43 sequence = CAAATAAACTAAAGT... Gene: CLOBAR_01473: Leucyl-tRNA synthetase (EC 6.1.1.4) |
Leucyl-tRNA synthetase (EC 6.1.1.4) |
| CRON 2. | |||||||||||||||||||||
| brnQ1 |
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Clostridium novyi NT Site: position = -381 score = 71.14 sequence = TCAAGACATTGACGG... Gene: NT01CX_2428: branched-chain amino acid transport system II carrier protein |
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branched-chain amino acid transport system II carrier protein |
| CRON 3. | |||||||||||||||||||||
| leuA1 |
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Clostridium kluyveri DSM 555 Site: position = -332 score = 57.43 sequence = TAAAGGATATGAAAA... Gene: CKL_0047: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Clostridium sp. SS2/1 Site: position = -306 score = 142.75 sequence = TTTAAATACAATGAT... Gene: CLOSS21_00446: 2-isopropylmalate synthase (EC 2.3.3.13) |
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Gene: Cbei_2175: 2-isopropylmalate synthase (EC 2.3.3.13) |
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Clostridium sp. L2-50 Site: position = -284 score = 119.05 sequence = ATAATACGATGAAGA... Gene: CLOL250_00490: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: CLOSCI_01346: 2-isopropylmalate synthase (EC 2.3.3.13) |
Gene: CLONEX_02947: 2-isopropylmalate synthase (EC 2.3.3.13) |
*
Clostridium leptum DSM 753 Site: position = -281 score = 110.24 sequence = TAAATACGATGAAGA... Gene: CLOLEP_01755: 2-isopropylmalate synthase (EC 2.3.3.13) |
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2-isopropylmalate synthase (EC 2.3.3.13) |
| CRON 4. | |||||||||||||||||||||
| ilvB |
*
Clostridium kluyveri DSM 555 Site: position = -306 score = 102.99 sequence = TATAAAAGCTATGAT... Gene: CKL_1618: Acetolactate synthase large subunit (EC 2.2.1.6) |
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Clostridium cellulolyticum H10 Site: position = -327 score = 86.73 sequence = TATACAGCTTATGAT... Gene: Ccel_3437: Acetolactate synthase large subunit (EC 2.2.1.6) |
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*
Clostridium butyricum 5521 Site: position = -461 score = 56.75 sequence = TTACAAGTATGACAA... Gene: CBY_1194: Acetolactate synthase large subunit (EC 2.2.1.6) |
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Acetolactate synthase large subunit (EC 2.2.1.6) |
| ilvH |
Gene: CKL_1617: Acetolactate synthase small subunit (EC 2.2.1.6) |
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Gene: Ccel_3436: Acetolactate synthase small subunit (EC 2.2.1.6) |
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Acetolactate synthase small subunit (EC 2.2.1.6) |
| ilvC |
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Clostridium kluyveri DSM 555 Site: position = -253 score = 104.84 sequence = TAAAAACTGAGACAG... Gene: CKL_1089: Ketol-acid reductoisomerase (EC 1.1.1.86) |
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Gene: Ccel_3435: Ketol-acid reductoisomerase (EC 1.1.1.86) |
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Ketol-acid reductoisomerase (EC 1.1.1.86) |
| leuA2 |
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Clostridium kluyveri DSM 555 Site: position = -244 score = 112.64 sequence = TGTAAAAACTATGAT... Gene: CKL_2160: 2-isopropylmalate synthase (EC 2.3.3.13) |
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Gene: Ccel_3434: 2-isopropylmalate synthase (EC 2.3.3.13) |
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Clostridium phytofermentans ISDg Site: position = -421 score = 109.86 sequence = GAAAAATACTTGGAA... Gene: Cphy_3171: 2-isopropylmalate synthase (EC 2.3.3.13) |
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2-isopropylmalate synthase (EC 2.3.3.13) |
| leuA |
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Gene: Ccel_3433: 2-isopropylmalate synthase (EC 2.3.3.13) |
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Clostridium acetobutylicum ATCC 824 Site: position = -310 score = 123.39 sequence = ATATTGCTATGAACA... Gene: CAC0273: 2-isopropylmalate synthase (EC 2.3.3.13) |
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Clostridium difficile 630 Site: position = -369 score = 116.48 sequence = AAAAAGTGATGAATA... Gene: CD0989: 2-isopropylmalate synthase (EC 2.3.3.13) |
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2-isopropylmalate synthase (EC 2.3.3.13) |
| leuC |
Gene: CKL_2159: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
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Gene: CD0990: 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
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3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) |
| leuD |
Gene: CKL_2158: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
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Gene: CD0991: 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
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3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) |
| leuB |
Gene: CKL_2157: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
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Gene: CD0992: 3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
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3-isopropylmalate dehydrogenase (EC 1.1.1.85) |
| ilvH1 |
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Gene: CBY_1195: Acetolactate synthase small subunit (EC 2.2.1.6) |
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Acetolactate synthase small subunit (EC 2.2.1.6) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |