Regulog ydaO-yuaA - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | ydaO-yuaA |
| RFAM: | RF00379 |
| Regulation mode: | |
| Biological process: | Cell wall metabolism; Osmotic stress response |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - ydaO-yuaA
- By pathway - Cell wall metabolism
- By pathway - Osmotic stress response
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 2 | 2 |
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | 4 | 4 |
| Clostridium phytofermentans ISDg | 1 | 1 |
| Clostridium tetani E88 | 2 | 2 |
| Clostridium acetobutylicum ATCC 824 | 2 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 2 | 2 |
| Clostridium novyi NT | 1 | 1 |
| Clostridium perfringens ATCC 13124 | ||
| Clostridium difficile 630 | ||
| Clostridium beijerincki NCIMB 8052 | 3 | 2 |
| Clostridium sp. OhILAs | 1 | 1 |
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | ||
| Clostridium nexile DSM 1787 | ||
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | ||
| Clostridium butyricum 5521 | ||
| Clostridium bolteae ATCC BAA-613 | 1 | 1 |
| Clostridium bartlettii DSM 16795 |
| Genes | Function | ||||||||||||||||||||
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| CRON 1. | |||||||||||||||||||||
| nhaP |
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Clostridium phytofermentans ISDg Site: position = -273 score = 75.1 sequence = ATGAAACAAATCCGA... Gene: null: NhaP-type Na+/H+ and K+/H+ antiporters |
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Gene: Clos_2091: NhaP-type Na+/H+ and K+/H+ antiporters |
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NhaP-type Na+/H+ and K+/H+ antiporters |
| CRON 2. | |||||||||||||||||||||
| SH3/COG0791 |
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Clostridium cellulolyticum H10 Site: position = -171 score = 77.09 sequence = CTTATAAAAGGCTGA... Gene: Ccel_2128: SH3 domain / Cell wall-associated hydrolase, COG0791 |
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SH3 domain / Cell wall-associated hydrolase, COG0791 |
| CRON 3. | |||||||||||||||||||||
| COG0791 |
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Clostridium tetani E88 Site: position = -131 score = 78.47 sequence = AATACGTACTATGCT... Gene: CTC02078: Cell wall-associated hydrolases (invasion-associated proteins) |
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Cell wall-associated hydrolases (invasion-associated proteins) |
| CRON 4. | |||||||||||||||||||||
| COG0591 |
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Clostridium bolteae ATCC BAA-613 Site: position = -327 score = 79.77 sequence = TCACCAAGTCGCTTA... Gene: CLOBOL_01252: Na+/proline symporter |
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Na+/proline symporter |
| CRON 5. | |||||||||||||||||||||
| SH3/COG0791 |
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Clostridium cellulolyticum H10 Site: position = -148 score = 83.19 sequence = CGAAATTAAAAAGCT... Gene: Ccel_1956: SH3 domain / Cell wall-associated hydrolase, COG0791 |
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SH3 domain / Cell wall-associated hydrolase, COG0791 |
| CRON 6. | |||||||||||||||||||||
| SH3/COG0791 |
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Clostridium cellulolyticum H10 Site: position = -140 score = 90.32 sequence = TACAAAATATGCTGA... Gene: Ccel_0747: SH3 domain / Cell wall-associated hydrolase, COG0791 |
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SH3 domain / Cell wall-associated hydrolase, COG0791 |
| CRON 7. | |||||||||||||||||||||
| COG3773 |
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Clostridium kluyveri DSM 555 Site: position = -136 score = 85.22 sequence = ACAATATCATTAGCC... Gene: CKL_0312: Cell wall hydrolyses involved in spore germination |
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Clostridium tetani E88 Site: position = -103 score = 87.78 sequence = AATAACATAAGCCTA... Gene: CTC02551: Cell wall hydrolyses involved in spore germination |
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Clostridium acetobutylicum ATCC 824 Site: position = -124 score = 76.9 sequence = ATCATTAGCCTAAAT... Gene: CAC3081: Cell wall hydrolyses involved in spore germination |
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Clostridium botulinum A str. ATCC 3502 Site: position = -124 score = 94.71 sequence = ACTATTATTAGCCTA... Gene: CBO3432: Cell wall hydrolyses involved in spore germination |
Gene: NT01CX_1160: Cell wall hydrolyses involved in spore germination |
Gene: CPF_2662: Cell wall hydrolyses involved in spore germination |
Gene: CD3563: Cell wall hydrolyses involved in spore germination |
Gene: Cbei_0199: Cell wall hydrolyses involved in spore germination |
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Gene: CBY_2915: Cell wall hydrolyses involved in spore germination |
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Gene: CLOBAR_00229: Cell wall hydrolyses involved in spore germination |
Cell wall hydrolyses involved in spore germination |
| CRON 8. | |||||||||||||||||||||
| dapB |
2
Clostridium kluyveri DSM 555 Gene: CKL_3205: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CKL_2799: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CLOSS21_00346: Dihydrodipicolinate reductase (EC 1.3.1.26) |
*2
Clostridium cellulolyticum H10 Site: position = -281 score = 99.58 sequence = ATAATTTATCGCTGA... Gene: Ccel_0519: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: Ccel_0525: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: null: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CTC02295: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CAC2379: Dihydrodipicolinate reductase (EC 1.3.1.26) |
2
Clostridium botulinum A str. ATCC 3502 Gene: CBO0791: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CBO3153: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: NT01CX_1745: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CPF_2162: Dihydrodipicolinate reductase (EC 1.3.1.26) |
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Clostridium difficile 630 Gene: CD3226: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CD3229: Dihydrodipicolinate reductase (EC 1.3.1.26) |
*2
Clostridium beijerincki NCIMB 8052 Site: position = -249 score = 98.79 sequence = TAATTATAACGCTGA... Gene: Cbei_2934: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: Cbei_1795: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: Clos_1164: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CLOL250_00645: Dihydrodipicolinate reductase (EC 1.3.1.26) |
2
Clostridium scindens ATCC 35704 Gene: CLOSCI_00327: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CLOSCI_03685: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CLONEX_02737: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CLOLEP_03141: Dihydrodipicolinate reductase (EC 1.3.1.26) |
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Clostridium hiranonis DSM 13275 Gene: CLOHIR_00816: Dihydrodipicolinate reductase (EC 1.3.1.26) Gene: CLOHIR_00814: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CBY_0568: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CLOBOL_04167: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CLOBAR_00363: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Dihydrodipicolinate reductase (EC 1.3.1.26) |
| COG1246 |
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*2
Clostridium beijerincki NCIMB 8052 Site: position = -337 score = 97.02 sequence = GATATATGTAACGCT... Gene: Cbei_1453: N-acetylglutamate synthase and related acetyltransferases Gene: Cbei_2936: N-acetylglutamate synthase and related acetyltransferases |
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Gene: CLOBOL_03581: N-acetylglutamate synthase and related acetyltransferases |
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N-acetylglutamate synthase and related acetyltransferases |
| CRON 9. | |||||||||||||||||||||
| Clos_0046 |
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Clostridium sp. OhILAs Site: position = -286 score = 110.58 sequence = TATATACATAGCGCT... Gene: Clos_0046: hypothetical protein |
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hypothetical protein |
| CRON 10. | |||||||||||||||||||||
| lysM/COG3773 |
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Clostridium kluyveri DSM 555 Site: position = -147 score = 88.26 sequence = ACTATAAAACAAGCC... Gene: CKL_0667: Peptidoglycan-binding lysin domain / Cell wall hydrolyses involved in spore germination |
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Clostridium acetobutylicum ATCC 824 Site: position = -172 score = 83.59 sequence = CCTTAAGAGTGCCGA... Gene: CAC1232: Peptidoglycan-binding lysin domain / Cell wall hydrolyses involved in spore germination |
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Clostridium botulinum A str. ATCC 3502 Site: position = -129 score = 79.38 sequence = TAAACAAATCATGCC... Gene: CBO1324: Peptidoglycan-binding lysin domain / Cell wall hydrolyses involved in spore germination |
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Clostridium novyi NT Site: position = -135 score = 88.31 sequence = CATCTGAACAATGCC... Gene: NT01CX_1494: Peptidoglycan-binding lysin domain / Cell wall hydrolyses involved in spore germination |
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Peptidoglycan-binding lysin domain / Cell wall hydrolyses involved in spore germination |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |