Regulog T-box(Met) - Clostridiaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Met-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Clostridiaceae
- By RNA motif - T-box
- By effector - Met-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium kluyveri DSM 555 | 1 | 1 |
| Clostridium sp. SS2/1 | ||
| Clostridium cellulolyticum H10 | 1 | 1 |
| Clostridium phytofermentans ISDg | 1 | 1 |
| Clostridium tetani E88 | 1 | 1 |
| Clostridium acetobutylicum ATCC 824 | 1 | 1 |
| Clostridium botulinum A str. ATCC 3502 | 1 | 1 |
| Clostridium novyi NT | 1 | 1 |
| Clostridium perfringens ATCC 13124 | 2 | 1 |
| Clostridium difficile 630 | 1 | 1 |
| Clostridium beijerincki NCIMB 8052 | 1 | 1 |
| Clostridium sp. OhILAs | 5 | 4 |
| Clostridium sp. L2-50 | ||
| Clostridium scindens ATCC 35704 | 1 | 1 |
| Clostridium nexile DSM 1787 | 1 | 1 |
| Clostridium leptum DSM 753 | ||
| Clostridium hiranonis DSM 13275 | 1 | 1 |
| Clostridium butyricum 5521 | 1 | 1 |
| Clostridium bolteae ATCC BAA-613 | ||
| Clostridium bartlettii DSM 16795 | 1 | 1 |
| Genes | Function | ||||||||||||||||||||
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| CRON 1. | |||||||||||||||||||||
| metS |
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Clostridium kluyveri DSM 555 Site: position = -316 score = 91.09 sequence = GTTAAATACTATGAA... Gene: CKL_3766: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: CLOSS21_02673: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium cellulolyticum H10 Site: position = -306 score = 74.37 sequence = TACAGGCTGTGAAGA... Gene: Ccel_1098: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium phytofermentans ISDg Site: position = -416 score = 87.05 sequence = AAAATGCTGAGAAAA... Gene: null: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium tetani E88 Site: position = -318 score = 86.42 sequence = AAAATGCAATGAAAG... Gene: CTC00243: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium acetobutylicum ATCC 824 Site: position = -308 score = 92.38 sequence = TTCAAAAGCATTGAT... Gene: CAC2991: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium botulinum A str. ATCC 3502 Site: position = -302 score = 93.81 sequence = TAAATGCTATGAAGG... Gene: CBO0075: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium novyi NT Site: position = -330 score = 66.27 sequence = AGAAAATGCAGTGAA... Gene: NT01CX_0697: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium perfringens ATCC 13124 Site: position = -332 score = 85.66 sequence = AGAAAATGCAATGAA... Gene: CPF_2847: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*
Clostridium difficile 630 Site: position = -331 score = 104.83 sequence = ATTACAAGCTATGAA... Gene: CD3540: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: Cbei_0055: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium sp. OhILAs Site: position = -306 score = 111.04 sequence = TCTAAAAGCAGTGAT... Gene: Clos_2662: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: CLOL250_01279: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium scindens ATCC 35704 Site: position = -366 score = 50.67 sequence = CAAACGCAGTGACGG... Gene: CLOSCI_03024: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*
Clostridium nexile DSM 1787 Site: position = -267 score = 75.53 sequence = AGGAAACGCAATGAT... Gene: CLONEX_03592: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: CLOLEP_02543: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*
Clostridium hiranonis DSM 13275 Site: position = -288 score = 111.11 sequence = TAAAAGCGATGAAGA... Gene: CLOHIR_01636: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*
Clostridium butyricum 5521 Site: position = -440 score = 95.98 sequence = TTTAAATGCATTGAA... Gene: CBY_2255: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Gene: CLOBOL_04510: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*
Clostridium bartlettii DSM 16795 Site: position = -267 score = 132.73 sequence = TAAAAGCAATGAAGA... Gene: CLOBAR_02505: Methionyl-tRNA synthetase (EC 6.1.1.10) |
Methionyl-tRNA synthetase (EC 6.1.1.10) |
| metS2 |
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Gene: CPF_2846: Methionyl-tRNA synthetase, clostridial paralog |
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Clostridium sp. OhILAs Site: position = -303 score = 117.9 sequence = TAAATGCGAAGAAAA... Gene: Clos_1003: Methionyl-tRNA synthetase, clostridial paralog |
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Gene: CBY_2254: Methionyl-tRNA synthetase, clostridial paralog |
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Methionyl-tRNA synthetase, clostridial paralog |
| CRON 2. | |||||||||||||||||||||
| metS3 |
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Gene: Ccel_0205: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Clostridium beijerincki NCIMB 8052 Site: position = -285 score = 32.04 sequence = ATTATAAGTGATGCT... Gene: Cbei_3185: Methionyl-tRNA synthetase (EC 6.1.1.10) |
*
Clostridium sp. OhILAs Site: position = -360 score = 99.55 sequence = TAAAGGCTGTGAAGA... Gene: Clos_1001: Methionyl-tRNA synthetase (EC 6.1.1.10) |
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Methionyl-tRNA synthetase (EC 6.1.1.10) |
| CRON 3. | |||||||||||||||||||||
| metN |
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Gene: null: Methionine ABC transporter ATP-binding protein |
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Clostridium sp. OhILAs Site: position = -335 score = 95.85 sequence = CAAAGACGTTGAAGA... Gene: Clos_0125: Methionine ABC transporter ATP-binding protein |
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Methionine ABC transporter ATP-binding protein |
| metP |
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Gene: null: Methionine ABC transporter permease protein |
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Gene: Clos_0126: Methionine ABC transporter permease protein |
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Methionine ABC transporter permease protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |