Regulons of Clostridium difficile 630

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	AgaR		N-acetylgalactosamine utilization	3	6
TF	BirA	Biotin	Biotin biosynthesis	2	3
TF	CD0652		Multidrug resistance; Multidrug efflux	2	2
TF	CD0683			2	2
TF	CD1503		Multidrug resistance; Multidrug efflux	1	1
TF	CD2285			4	3
TF	CD3353			1	1
TF	CcpA	HPr, phosphocarrier protein	Carbon catabolism; Carbohydrate metabolism	62	84
TF	Fur	Iron ion, (Fe2+)	Iron homeostasis	9	14
TF	HcpR	Nitric oxide	Nitrosative stress response	2	2
TF	HrcA	Heat shock	Heat shock response	2	2
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	2	2
TF	LexA	DNA damage	SOS response	5	4
TF	NagR		N-acetylglucosamine utilization	1	2
TF	NiaR	Niacin	NAD biosynthesis	3	3
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	2	4
TF	Rex	NADH	Energy metabolism	11	13
TF	TreR	Trehalose-6-phosphate	Trehalose utilization	2	5
TF	XylR	Xylose	Xylose utilization	3	3
TF	YhcF		Multidrug resistance; Multidrug efflux	3	4
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	9	3
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	3	3
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	3	3
RNA	GEMM_RNA_motif	Cyclic diguanylate	Second messenger response	7	6
RNA	Glycine	Glycine	Glycine metabolism	8	5
RNA	L10_leader		Ribosome biogenesis	1	1
RNA	L19_leader		Ribosome biogenesis	1	1
RNA	L20_leader		Ribosome biogenesis	1	1
RNA	L21_leader		Ribosome biogenesis	1	1
RNA	Lysine	Lysine	Lysine biosynthesis	6	4
RNA	PreQ1	Pre-queuosine1	Queuosine biosynthesis	2	1
RNA	Purine	Adenine; Guanine	Purine metabolism	8	4
RNA	PyrR	PyrR	Pyrimidine metabolism	4	3
RNA	SAM	S-adenosylmethionine	Methionine biosynthesis	9	6
RNA	T-box(Ala)	Ala-tRNA	Amino acid metabolism	1	1
RNA	T-box(Arg)	Arg-tRNA	Amino acid metabolism	5	5
RNA	T-box(Asn)	Asn-tRNA	Amino acid metabolism	2	2
RNA	T-box(His)	His-tRNA	Amino acid metabolism	1	1
RNA	T-box(Ile)	Ile-tRNA	Amino acid metabolism	4	1
RNA	T-box(Leu)	Leu-tRNA	Amino acid metabolism	2	2
RNA	T-box(Met)	Met-tRNA	Amino acid metabolism	1	1
RNA	T-box(Phe)	Phe-tRNA	Amino acid metabolism	1	1
RNA	T-box(Pro)	Pro-tRNA	Amino acid metabolism	1	1
RNA	T-box(Ser)	Ser-tRNA	Amino acid metabolism	4	1
RNA	T-box(Thr)	Thr-tRNA	Amino acid metabolism	1	1
RNA	T-box(Trp)	Trp-tRNA	Amino acid metabolism	4	2
RNA	T-box(Tyr)	Tyr-tRNA	Amino acid metabolism	1	1
RNA	T-box(Val)	Val-tRNA	Amino acid metabolism	2	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	3	3
RNA	glmS	Glucosamine-6-phosphate	Amino sugar metabolism	1	1
RNA	ykkC-yxkD		Multidrug resistance	2	2
RNA	yybP-ykoY			3	1

	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulons of Clostridium difficile 630

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --