Regulog T-box(Ala) - Clostridiaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Ala-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Clostridiaceae
By RNA motif - T-box
By effector - Ala-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Clostridium kluyveri DSM 555	1	1
Clostridium sp. SS2/1
Clostridium cellulolyticum H10	3	2
Clostridium phytofermentans ISDg	1	1
Clostridium tetani E88	1	1
Clostridium acetobutylicum ATCC 824	1	1
Clostridium botulinum A str. ATCC 3502	1	1
Clostridium novyi NT	3	2
Clostridium perfringens ATCC 13124	3	2
Clostridium difficile 630	1	1
Clostridium beijerincki NCIMB 8052	3	2
Clostridium sp. OhILAs	1	1
Clostridium sp. L2-50
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787
Clostridium leptum DSM 753	1	1
Clostridium hiranonis DSM 13275	1	1
Clostridium butyricum 5521	3	2
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																					Function

CRON 1.
alaR	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1 Gene: CLOSS21_01952: Transcriptional regulator, AsnC family	* Clostridium cellulolyticum H10 Site: position = -332 score = 99.79 sequence = TAAAAATGCTGTGAA... Gene: Ccel_2209: Transcriptional regulator, AsnC family	Clostridium phytofermentans ISDg Gene: null: Transcriptional regulator, AsnC family	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	* Clostridium novyi NT Site: position = -312 score = 111.24 sequence = AAAAGATTGTGATAA... Gene: NT01CX_1456: Transcriptional regulator, AsnC family	* Clostridium perfringens ATCC 13124 Site: position = -435 score = 63.06 sequence = GAAAAACAGTGAAGA... Gene: CPF_0706: Transcriptional regulator, AsnC family	Clostridium difficile 630	* Clostridium beijerincki NCIMB 8052 Site: position = -323 score = 115.94 sequence = TTTAAAGATAGTGAT... Gene: Cbei_4150: Transcriptional regulator, AsnC family	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704 Gene: CLOSCI_00984: Transcriptional regulator, AsnC family	Clostridium nexile DSM 1787 Gene: CLONEX_02092: Transcriptional regulator, AsnC family	Clostridium leptum DSM 753 Gene: CLOLEP_03310: Transcriptional regulator, AsnC family	Clostridium hiranonis DSM 13275	* Clostridium butyricum 5521 Site: position = -418 score = 115.29 sequence = GTTAAAGATAGTGAT... Gene: CBY_3896: Transcriptional regulator, AsnC family	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_02711: Transcriptional regulator, AsnC family	Clostridium bartlettii DSM 16795	Transcriptional regulator, AsnC family
alaT	Clostridium kluyveri DSM 555	Clostridium sp. SS2/1 Gene: CLOSS21_01951: aminotransferase, class I/II	Clostridium cellulolyticum H10 Gene: Ccel_2208: aminotransferase, class I/II	Clostridium phytofermentans ISDg Gene: null: aminotransferase, class I/II	Clostridium tetani E88	Clostridium acetobutylicum ATCC 824	Clostridium botulinum A str. ATCC 3502	Clostridium novyi NT Gene: NT01CX_1457: aminotransferase, class I/II	Clostridium perfringens ATCC 13124 Gene: CPF_0707: aminotransferase, class I/II	Clostridium difficile 630	Clostridium beijerincki NCIMB 8052 Gene: Cbei_4149: aminotransferase, class I/II	Clostridium sp. OhILAs	Clostridium sp. L2-50	Clostridium scindens ATCC 35704 Gene: CLOSCI_00983: aminotransferase, class I/II	Clostridium nexile DSM 1787 Gene: CLONEX_02091: aminotransferase, class I/II	Clostridium leptum DSM 753 Gene: CLOLEP_03309: aminotransferase, class I/II	Clostridium hiranonis DSM 13275	Clostridium butyricum 5521 Gene: CBY_3895: aminotransferase, class I/II	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_02710: aminotransferase, class I/II	Clostridium bartlettii DSM 16795	aminotransferase, class I/II

CRON 2.
alaS	* Clostridium kluyveri DSM 555 Site: position = -250 score = 86.44 sequence = ATGTGGCAGTGAATA... Gene: CKL_1324: Alanyl-tRNA synthetase (EC 6.1.1.7)	Clostridium sp. SS2/1 Gene: CLOSS21_01816: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium cellulolyticum H10 Site: position = -289 score = 117.33 sequence = AAGAATGGCAATGAA... Gene: Ccel_2096: Alanyl-tRNA synthetase (EC 6.1.1.7)	2 Clostridium phytofermentans ISDg* Site: position = -307 score = 100.76 sequence = AAAAGGCAAGGAAGA... Gene: null: Alanyl-tRNA synthetase (EC 6.1.1.7) Gene: null: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium tetani E88 Site: position = -228 score = 102.12 sequence = TTATGACAATGATAA... Gene: CTC01055: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium acetobutylicum ATCC 824 Site: position = -223 score = 99.09 sequence = TTAGAGTGATGATGA... Gene: CAC1678: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium botulinum A str. ATCC 3502 Site: position = -234 score = 90.29 sequence = ATATATAGTGATGAT... Gene: CBO2564: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium novyi NT Site: position = -254 score = 91.37 sequence = ATATTAGGCGATGAT... Gene: NT01CX_2280: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium perfringens ATCC 13124 Site: position = -330 score = 102.48 sequence = ATGAAAAGCGTTGAC... Gene: CPF_2033: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium difficile 630 Site: position = -305 score = 125.16 sequence = CAAATACAGTGATAA... Gene: CD1282: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium beijerincki NCIMB 8052 Site: position = -454 score = 101.69 sequence = ATTAAGCGATGAATA... Gene: Cbei_1104: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium sp. OhILAs Site: position = -361 score = 142.85 sequence = GTTAAAAGTGATGAT... Gene: Clos_1666: Alanyl-tRNA synthetase (EC 6.1.1.7)	Clostridium sp. L2-50 Gene: CLOL250_00149: Alanyl-tRNA synthetase (EC 6.1.1.7)	Clostridium scindens ATCC 35704 Gene: CLOSCI_00441: Alanyl-tRNA synthetase (EC 6.1.1.7)	Clostridium nexile DSM 1787 Gene: CLONEX_02964: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium leptum DSM 753 Site: position = -245 score = 84.29 sequence = AATAGGCTGTGAAGG... Gene: CLOLEP_01892: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium hiranonis DSM 13275 Site: position = -192 score = 113.92 sequence = CAAATGCAAAGAAAA... Gene: CLOHIR_01199: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium butyricum 5521 Site: position = -352 score = 107.55 sequence = ATATTAAGCGATGAA... Gene: CBY_2616: Alanyl-tRNA synthetase (EC 6.1.1.7)	Clostridium bolteae ATCC BAA-613 Gene: CLOBOL_04007: Alanyl-tRNA synthetase (EC 6.1.1.7)	* Clostridium bartlettii DSM 16795 Site: position = -285 score = 131.12 sequence = TTTAAATACAATGAA... Gene: CLOBAR_02185: Alanyl-tRNA synthetase (EC 6.1.1.7)	Alanyl-tRNA synthetase (EC 6.1.1.7)